ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_745260.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit gamma (Afu1g06030) partial mRNA Length = 2412 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 295 cttcctcggcctcctctgcctcgc 318 |||||||||||||||||||||||| Sbjct: 505 cttcctcggcctcctctgcctcgc 482
>gb|AC123944.4| Mus musculus BAC clone RP24-87F18 from chromosome 10, complete sequence Length = 194243 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 221 tggaaggagaaaaatgatccct 242 |||||||||||||||||||||| Sbjct: 30091 tggaaggagaaaaatgatccct 30070
>emb|AL691512.11| Mouse DNA sequence from clone RP23-440L5 on chromosome 4 Contains a CpG island, complete sequence Length = 206422 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 218 gaatggaaggagaaaaatgatccctt 243 |||||||||||||||||| ||||||| Sbjct: 87823 gaatggaaggagaaaaataatccctt 87848
>gb|AC142407.3| Mus musculus BAC clone RP24-497N7 from chromosome 10, complete sequence Length = 171327 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 221 tggaaggagaaaaatgatccct 242 |||||||||||||||||||||| Sbjct: 153219 tggaaggagaaaaatgatccct 153198
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcctcg 317 ||||||||||||||||||| |||||| Sbjct: 5965314 cctcttcctcggcctcctcggcctcg 5965289
>gb|BT018871.1| Zea mays clone EL01N0562H06.d mRNA sequence Length = 1711 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcctcgccctcttccac 328 |||||||||||||| || ||||| || |||||||||| Sbjct: 1429 cctcttcctcggccacccctgccccgacctcttccac 1393
>ref|XM_427510.1| PREDICTED: Gallus gallus similar to zinc finger protein 541 (LOC429954), partial mRNA Length = 330 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 ttcctcggcctcctctgcctc 316 ||||||||||||||||||||| Sbjct: 327 ttcctcggcctcctctgcctc 307
>gb|DQ099416.1| Toxoplasma gondii putative ATP-binding cassette protein (ABC.H2) gene, complete cds Length = 3000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 tcttcctcggcctcctctgcc 314 ||||||||||||||||||||| Sbjct: 38 tcttcctcggcctcctctgcc 58
>ref|XM_716647.1| Candida albicans SC5314 alpha-1,2-mannosyltransferase (CaO19_1663), mRNA Length = 1386 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 aacaacaacaatccgcaaaccaaga 91 ||||||||||||| ||||||||||| Sbjct: 197 aacaacaacaatctgcaaaccaaga 221
>ref|XM_716528.1| Candida albicans SC5314 hypothetical protein (CaO19_9232), mRNA Length = 1386 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 aacaacaacaatccgcaaaccaaga 91 ||||||||||||| ||||||||||| Sbjct: 197 aacaacaacaatctgcaaaccaaga 221
>emb|CT025435.2| Xenopus tropicalis finished cDNA, clone TGas005b08 Length = 4489 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 acctcttcctcggcctcctct 311 ||||||||||||||||||||| Sbjct: 3528 acctcttcctcggcctcctct 3508
>gb|AC126548.4| Mus musculus BAC clone RP24-199M7 from chromosome 13, complete sequence Length = 145578 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcctc 316 |||||||||| |||||||||||||| Sbjct: 134591 cctcttcctctgcctcctctgcctc 134567
>emb|CR678825.2|CNS0FMQD Tetraodon nigroviridis full-length cDNA Length = 1372 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 297 tcctcggcctcctctgcctcgccctcttc 325 |||||| |||||||| ||||||||||||| Sbjct: 521 tcctcgtcctcctcttcctcgccctcttc 493
>emb|CR658859.2|CNS0F7CH Tetraodon nigroviridis full-length cDNA Length = 1361 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 297 tcctcggcctcctctgcctcgccctcttc 325 ||||||||||||||| ||||| ||||||| Sbjct: 507 tcctcggcctcctcttcctcgtcctcttc 479
>gb|AC109479.3| Homo sapiens chromosome 5 clone RP11-443C10, complete sequence Length = 183734 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 cctcctctgcctcgccctcttccac 328 |||||||||||||||| |||||||| Sbjct: 153310 cctcctctgcctcgccatcttccac 153334
>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence Length = 169439 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 aaatgatccctttctcccttg 252 ||||||||||||||||||||| Sbjct: 59892 aaatgatccctttctcccttg 59872
>emb|CR450749.7| Zebrafish DNA sequence from clone DKEY-2J6 in linkage group 5, complete sequence Length = 142889 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 acctcttcctcggcctcctct 311 ||||||||||||||||||||| Sbjct: 66121 acctcttcctcggcctcctct 66141
>gb|AC090398.12| Homo sapiens chromosome 18, clone RP11-669I1, complete sequence Length = 133378 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 aaatgatccctttctcccttg 252 ||||||||||||||||||||| Sbjct: 97530 aaatgatccctttctcccttg 97510
>gb|AC008544.7| Homo sapiens chromosome 5 clone CTC-500G13, complete sequence Length = 168008 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 cctcctctgcctcgccctcttccac 328 |||||||||||||||| |||||||| Sbjct: 86593 cctcctctgcctcgccatcttccac 86617
>gb|AC157085.2| Mus musculus BAC clone RP24-185I21 from chromosome 9, complete sequence Length = 159122 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 aggagaaaaatgatccctttctccc 249 ||||||||||||| ||||||||||| Sbjct: 147490 aggagaaaaatgagccctttctccc 147466
>gb|AC155931.2| Mus musculus BAC clone RP23-289D4 from 9, complete sequence Length = 189845 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 aggagaaaaatgatccctttctccc 249 ||||||||||||| ||||||||||| Sbjct: 118449 aggagaaaaatgagccctttctccc 118473
>gb|AY105289.1| Zea mays PCO103565 mRNA sequence Length = 2186 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcctcgccctcttccac 328 |||||||||||||| || ||||| || |||||||||| Sbjct: 1666 cctcttcctcggccacccctgccccgacctcttccac 1630
>gb|AC132433.3| Mus musculus BAC clone RP23-214L14 from 13, complete sequence Length = 229555 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcctc 316 |||||||||| |||||||||||||| Sbjct: 59870 cctcttcctctgcctcctctgcctc 59846
>emb|AL611934.18| Mouse DNA sequence from clone RP23-472A8 on chromosome 4, complete sequence Length = 184866 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctg 312 ||||||||||||||||||||| Sbjct: 6188 cctcttcctcggcctcctctg 6168
>ref|NM_188932.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2403 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 acaacaacaatccgcaaaccaaga 91 |||||||||||||||||| ||||| Sbjct: 958 acaacaacaatccgcaaatcaaga 935
>ref|XM_549104.2| PREDICTED: Canis familiaris similar to bromo domain-containing protein disrupted in leukemia (LOC491984), mRNA Length = 6039 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctct 311 |||||||||||||||||||| Sbjct: 5326 cctcttcctcggcctcctct 5307
>ref|XM_542943.2| PREDICTED: Canis familiaris similar to Tribbles homolog 3 (TRB-3) (Neuronal cell death inducible putative kinase), transcript variant 1 (LOC485819), mRNA Length = 1077 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctct 311 |||||||||||||||||||| Sbjct: 1045 cctcttcctcggcctcctct 1026
>ref|XM_856884.1| PREDICTED: Canis familiaris similar to Tribbles homolog 3 (TRB-3) (Neuronal cell death inducible putative kinase), transcript variant 2 (LOC485819), mRNA Length = 999 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctct 311 |||||||||||||||||||| Sbjct: 967 cctcttcctcggcctcctct 948
>emb|AL391826.7| Human DNA sequence from clone RP11-328F17 on chromosome 1, complete sequence Length = 68224 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gaatggaaggagaaaaatga 237 |||||||||||||||||||| Sbjct: 30459 gaatggaaggagaaaaatga 30440
>emb|AL162497.20| Human DNA sequence from clone RP11-313L9 on chromosome 13 Contains a novel gene, the IRS2 gene for insulin receptor substrate 2 and two CpG islands, complete sequence Length = 143409 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 acaaccaaacaacaacaatc 79 |||||||||||||||||||| Sbjct: 59681 acaaccaaacaacaacaatc 59700
>gb|AC016931.21| Homo sapiens 3 BAC RP11-22E12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169032 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctct 311 |||||||||||||||||||| Sbjct: 67101 cctcttcctcggcctcctct 67082
>emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on chromosome 11 Contains part of the Car10 gene for carbonic anhydrase 10, complete sequence Length = 134741 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 accaagagagctaggatgtg 104 |||||||||||||||||||| Sbjct: 6617 accaagagagctaggatgtg 6636
>gb|AC108451.9| Homo sapiens chromosome 15, clone RP11-379K22, complete sequence Length = 198707 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcct 315 ||||||||| |||||||||||||| Sbjct: 35635 cctcttcctaggcctcctctgcct 35612
>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence Length = 177964 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 cctcttcctcggcctcctctgcct 315 ||||||||| |||||||||||||| Sbjct: 159759 cctcttcctaggcctcctctgcct 159736
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 acaacaacaatccgcaaaccaaga 91 |||||||||||||||||| ||||| Sbjct: 20213635 acaacaacaatccgcaaatcaaga 20213658
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 caacctcttcctcggcctcctctgcctc 316 ||||||||||||| |||||||| ||||| Sbjct: 1385665 caacctcttcctcagcctcctcggcctc 1385692
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 acaacaacaatccgcaaaccaaga 91 |||||||||||||||||| ||||| Sbjct: 79421 acaacaacaatccgcaaatcaaga 79444
>emb|CR352260.13| Zebrafish DNA sequence from clone CH211-234B14 in linkage group 7, complete sequence Length = 99633 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 caaccaaacaacaacaatcc 80 |||||||||||||||||||| Sbjct: 80499 caaccaaacaacaacaatcc 80480
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ctcttcctcggcctcctctgcctc 316 ||||||||||||||||||| |||| Sbjct: 2208018 ctcttcctcggcctcctcttcctc 2208041
>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166585 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 tcgaatggaaggagaaaaat 235 |||||||||||||||||||| Sbjct: 100355 tcgaatggaaggagaaaaat 100336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,143,087 Number of Sequences: 3902068 Number of extensions: 4143087 Number of successful extensions: 115397 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115221 Number of HSP's gapped (non-prelim): 176 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
