ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22f23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TAP46_ARATH (Q8LDQ4) PP2A regulatory subunit TAP46 (2A phosphata... 197 2e-50
2SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding fact... 32 1.1
3VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH) 32 1.9
4VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH) 32 1.9
5CTBP_DROME (O46036) C-terminal-binding protein (CtBP protein) (d... 31 3.3
6NAGZ_VIBCH (Q9KU37) Beta-hexosaminidase (EC 3.2.1.52) (N-acetyl-... 30 4.3
7MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai... 30 5.6
8VDH_STRCM (Q53872) Valine dehydrogenase (EC 1.4.1.-) (ValDH) 30 7.3
9Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2... 29 9.6

>TAP46_ARATH (Q8LDQ4) PP2A regulatory subunit TAP46 (2A phosphatase-associated|
           protein of 46 kDa)
          Length = 405

 Score =  197 bits (502), Expect = 2e-50
 Identities = 98/157 (62%), Positives = 114/157 (72%), Gaps = 7/157 (4%)
 Frame = -2

Query: 613 HHNAASRAPYSKPAAPITCATFAQDVIEGRASVSQAHDHKHQPLIFGPASLVGGGLTSER 434
           H +AA+R  YSKPA PITCATFAQDV+EGRASVSQ H+HK+QPLIFGPAS+VGG L++ER
Sbjct: 249 HRDAAARIQYSKPAQPITCATFAQDVLEGRASVSQGHEHKNQPLIFGPASIVGGPLSTER 308

Query: 433 ERMAAQVFQPSFRMPTMSIEQAGLAEMKMMEQWQESTAKMIQEASSSWH-------KDDT 275
           ERM AQVFQPS RMPTM IE AGL EM +M  WQE T K I+EA++SW+       K++ 
Sbjct: 309 ERMIAQVFQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEED 368

Query: 274 SLXXXXXXXXXXXXXXXXDWKDENPRGAGNKKLTPCG 164
                             DWKD+NPRGAGNKKLTPCG
Sbjct: 369 EEDDDEDEEAVMKARAFDDWKDDNPRGAGNKKLTPCG 405



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>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
            (Transcription factor GATA-B) (dGATA-B) (Protein serpent)
          Length = 1264

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = -1

Query: 542  RRH*RQSKCFTSS*PQTPTPDIWTCKSCWWGTHQ*EGKNGSTSFSA*FQDADNEHRTSRP 363
            ++H +Q  C     P TPT  I+   S    THQ    N + + S+ F + +N + +S  
Sbjct: 992  QQHQQQQSCSMQHSPSTPT-SIFNTPS---PTHQLHNNNNNNNNSSIFNNNNNNNSSS-- 1045

Query: 362  S*NENDGAMARKYRQ 318
              NEN+  + +KY Q
Sbjct: 1046 --NENNNKLIQKYLQ 1058



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>VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 363

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 442 W*VPHQQDLQVQISGVGVCGHELVKHLL 525
           W  P  +D  V I+GVG  GH LV+HLL
Sbjct: 176 WGDPTLRDRTVGIAGVGKVGHHLVEHLL 203



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>VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 363

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 442 W*VPHQQDLQVQISGVGVCGHELVKHLL 525
           W  P  +D  V I+GVG  GH LV+HLL
Sbjct: 176 WGDPTLRDRTVGIAGVGKVGHHLVEHLL 203



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>CTBP_DROME (O46036) C-terminal-binding protein (CtBP protein) (dCtBP)|
          Length = 476

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -2

Query: 595 RAPYSKPAAPITCATFAQDVIEGRASVSQAHDHKHQPLIFGPASLVGGGLTSERERMAAQ 416
           R P +  A  +  A + +  +  RA  +  HD  H     G  S VGGG T+  +  AA 
Sbjct: 358 RTPPAAAAGGVAAAVYPEGALHHRAHSTTPHDGPHSTTNLG--STVGGGPTTVAQAAAAA 415

Query: 415 V 413
           V
Sbjct: 416 V 416



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>NAGZ_VIBCH (Q9KU37) Beta-hexosaminidase (EC 3.2.1.52)|
           (N-acetyl-beta-glucosaminidase)
           (Beta-N-acetylhexosaminidase)
          Length = 330

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = -2

Query: 550 FAQDV-IEGRASVSQAHDHKHQPLIFGPASLVGGGLTSERERMAAQVFQPSFRMPTMSIE 374
           F+ D+ +EG A +    +  HQ L+ G   +    L   +   A +V      +P M + 
Sbjct: 240 FSDDLSMEGAAVMGGPVERSHQALVAGCDMI----LICNKREAAVEVLD---NLPIMEVP 292

Query: 373 QA---------GLAEMKMMEQWQESTAKM 314
           QA           +E+K +E+WQ+++A M
Sbjct: 293 QAEALLKKQQFSYSELKRLERWQQASANM 321



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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +3

Query: 354 ISARPACSMLIVGILKLG*KTCAAILSLSLVSPPPTRLAGPNIRGWCLWS*AC 512
           + A PA S L +G L LG   C A L+ S  + PP    GP   GWC+ + +C
Sbjct: 135 LGACPAASCLGLGRL-LG--DCQACLAFSSPTAPPR---GPGTLGWCVHNESC 181



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>VDH_STRCM (Q53872) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 358

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 442 W*VPHQQDLQVQISGVGVCGHELVKHLL 525
           W  P  +  +V ++GVG  GH LV+HLL
Sbjct: 174 WGDPSLRGRKVGVAGVGKVGHHLVEHLL 201



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>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger|
           protein 216)
          Length = 213

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
 Frame = -1

Query: 605 CCQPCTIFQTSCSNHLCNFCSRRH*-------RQSKCFTSS*PQTPTPDIWTCKSCWWGT 447
           C   C  +    +N +C+ C + H        R S   T+S   +PT D  + +    G 
Sbjct: 14  CSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADAGL 73

Query: 446 HQ*EGKNGSTS 414
           +  EG  GSTS
Sbjct: 74  NNCEGAAGSTS 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,359,316
Number of Sequences: 219361
Number of extensions: 1615155
Number of successful extensions: 3792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3789
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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