Clone Information

BLAST Search Result

Clone Name	rbags22f22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF427791.1\| Hordeum vulgare Mla locus, complete sequence	289	6e-75
2	emb\|AJ001341.1\|HVACYLCOA Hordeum vulgare mRNA for putative acyl-...	232	1e-57
3	gb\|BT009170.1\| Triticum aestivum clone wl1n.pk0102.e8:fis, full ...	161	4e-36
4	gb\|AY104290.1\| Zea mays PCO085555 mRNA sequence	153	9e-34
5	gb\|AY105897.1\| Zea mays PCO085554 mRNA sequence	149	1e-32
6	ref\|XM_476282.1\| Oryza sativa (japonica cultivar-group), predic...	119	1e-23
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
8	dbj\|AP002842.3\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
9	dbj\|AK100758.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	1e-23
10	dbj\|AK098983.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	1e-23
11	dbj\|AK060849.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	3e-21
12	ref\|XM_463579.1\| Oryza sativa (japonica cultivar-group), predic...	62	3e-06
13	dbj\|AP003380.3\| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
14	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
15	dbj\|AP006531.3\| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
16	dbj\|AK068952.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	62	3e-06
17	emb\|CT573502.2\| Medicago truncatula chromosome 5 clone mte1-69f2...	54	6e-04
18	gb\|AC010071.6\| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel...	48	0.038
19	gb\|AY817111.1\| Lycopersicon cheesmaniae peroxisomal acyl-CoA oxi...	48	0.038
20	gb\|AY817109.1\| Lycopersicon esculentum peroxisomal acyl-CoA oxid...	48	0.038
21	gb\|AE003531.3\| Drosophila melanogaster chromosome 3L, section 54...	48	0.038
22	gb\|AC119408.23\| Medicago truncatula clone mth2-5f18, complete se...	46	0.15
23	gb\|AC149079.7\| Medicago truncatula clone mth2-75i8, complete seq...	46	0.15
24	gb\|AE000516.2\| Mycobacterium tuberculosis CDC1551, complete genome	44	0.59
25	emb\|AL390958.15\| Human DNA sequence from clone RP11-271D19 on ch...	44	0.59
26	gb\|DQ123974.1\| Coffea arabica x Coffea canephora clone HT-SSH1-C...	44	0.59
27	emb\|BX842581.1\| Mycobacterium tuberculosis H37Rv complete genome...	44	0.59
28	emb\|BX248344.1\| Mycobacterium bovis subsp. bovis AF2122/97 compl...	44	0.59
29	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	44	0.59
30	gb\|AC126257.4\| Mus musculus BAC clone RP24-247A8 from chromosome...	42	2.3
31	gb\|AC133193.3\| Mus musculus BAC clone RP23-396L1 from chromosome...	42	2.3
32	emb\|AL592153.6\| Human DNA sequence from clone RP11-58K1 on chrom...	42	2.3
33	emb\|AL354773.8\| Human DNA sequence from clone RP5-855L24 on chro...	42	2.3
34	emb\|AL160053.15\| Human DNA sequence from clone RP11-536D16 on ch...	42	2.3
35	emb\|AL928931.15\| Mouse DNA sequence from clone RP23-419H3 on chr...	42	2.3
36	gb\|AC020650.11\| Homo sapiens 3 BAC RP11-165B13 (Roswell Park Can...	42	2.3
37	gb\|AC026343.17\| Homo sapiens 3 BAC RP11-384F7 (Roswell Park Canc...	42	2.3
38	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	42	2.3
39	dbj\|AB113906.1\| Uncultured bacterium nifH gene for nitrogenase F...	42	2.3
40	gb\|AC012595.10\| Homo sapiens BAC clone RP11-539J22 from 2, compl...	42	2.3
41	emb\|BX004834.13\| Zebrafish DNA sequence from clone CH211-42E22 i...	42	2.3
42	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	40	9.2
43	gb\|AY017822.1\| Oryza sativa microsatellite MRG0147 containing (A...	40	9.2
44	gb\|U00042.1\| Caenorhabditis elegans cosmid T04A6, complete sequence	40	9.2
45	gb\|AC151464.2\| Xenopus tropicalis BAC clone ISB1-213F14 containi...	40	9.2
46	gb\|AE008590.1\| Rickettsia conorii str. Malish 7, section 22 of 1...	40	9.2
47	gb\|AC124181.3\| Mus musculus BAC clone RP23-204B12 from chromosom...	40	9.2
48	gb\|CP000053.1\| Rickettsia felis URRWXCal2, complete genome	40	9.2
49	gb\|CP000320.1\| Nitrobacter hamburgensis X14 plasmid 1, complete ...	40	9.2
50	emb\|BX842654.1\| Bdellovibrio bacteriovorus complete genome, stra...	40	9.2
51	emb\|CR352255.9\| Zebrafish DNA sequence from clone CH211-118E10 i...	40	9.2
52	emb\|CR354383.8\| Zebrafish DNA sequence from clone CH211-123O7 in...	40	9.2
53	emb\|CR354613.7\| Zebrafish DNA sequence from clone CH211-112G7 in...	40	9.2
54	gb\|AF517634.1\| Drosophila melanogaster BIR-containing ubiquitin-...	40	9.2
55	emb\|BX510990.32\| Zebrafish DNA sequence from clone CH211-67F13 i...	40	9.2
56	gb\|AY119104.1\| Drosophila melanogaster RE07981 full insert cDNA	40	9.2
57	gb\|AC079065.8\| Homo sapiens chromosome 8, clone RP11-49F13, comp...	40	9.2
58	ref\|NM_141738.3\| Drosophila melanogaster Bruce CG6303-RA (Bruce)...	40	9.2
59	gb\|AC008357.8\| Drosophila melanogaster, chromosome 3R, region 86...	40	9.2
60	emb\|BX323806.15\| Zebrafish DNA sequence from clone DKEYP-123A9 i...	40	9.2
61	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
62	gb\|AC068389.10\| Homo sapiens chromosome 8, clone RP11-91I20, com...	40	9.2
63	gb\|AC079773.8\| Homo sapiens BAC clone RP11-258B17 from 2, comple...	40	9.2
64	gb\|AC010164.2\|AC010164 Arabidopsis thaliana chromosome I BAC F14...	40	9.2
65	dbj\|AP004121.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
66	dbj\|AP004867.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
67	dbj\|BA000016.3\| Clostridium perfringens str. 13 DNA, complete ge...	40	9.2
68	emb\|BX004966.12\| Zebrafish DNA sequence from clone DKEY-5E12 in ...	40	9.2
69	gb\|AE003686.4\| Drosophila melanogaster chromosome 3R, section 24...	40	9.2
70	dbj\|AP002797.3\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.2
71	emb\|AL837518.17\| Mouse DNA sequence from clone RP23-312M16 on ch...	40	9.2

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  289 bits (146), Expect = 6e-75
 Identities = 175/184 (95%), Gaps = 2/184 (1%)
 Strand = Plus / Plus

                                                                          
Query: 1      gctctaaaaatattnattt--tatcctcacacccacaagaaggttcaagataaacacata 58
              |||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 134933 gctctaaaaatattcaattattatcctcacacccacaagaaggttcaagataaacacata 134992

                                                                          
Query: 59     ttacaccacaatgaaaatatgtttataaacatgcacatacattgaacgcaagttgaaaaa 118
              |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 134993 ttacaccacagtgaaaatatgtttataaacatgcacatacgttgaacgcaagttgacaaa 135052

                                                                          
Query: 119    caaattaacctagaggaagcatagttttgaccatcttaacaatcatctagaacacacaag 178
              |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 135053 caaattaacctagaggaagcatagttttgagcatgttaacaatcatctagaacacacaag 135112

                  
Query: 179    tcac 182
              ||||
Sbjct: 135113 tcac 135116



 Score =  289 bits (146), Expect = 6e-75
 Identities = 175/184 (95%), Gaps = 2/184 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1     gctctaaaaatattnattt--tatcctcacacccacaagaaggttcaagataaacacata 58
             |||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 95220 gctctaaaaatattcaattattatcctcacacccacaagaaggttcaagataaacacata 95279

                                                                         
Query: 59    ttacaccacaatgaaaatatgtttataaacatgcacatacattgaacgcaagttgaaaaa 118
             |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 95280 ttacaccacagtgaaaatatgtttataaacatgcacatacgttgaacgcaagttgacaaa 95339

                                                                         
Query: 119   caaattaacctagaggaagcatagttttgaccatcttaacaatcatctagaacacacaag 178
             |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 95340 caaattaacctagaggaagcatagttttgagcatgttaacaatcatctagaacacacaag 95399

                 
Query: 179   tcac 182
             ||||
Sbjct: 95400 tcac 95403

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>emb|AJ001341.1|HVACYLCOA Hordeum vulgare mRNA for putative acyl-CoA oxidase
          Length = 2273

 Score =  232 bits (117), Expect = 1e-57
 Identities = 124/125 (99%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 711

                                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacccgagagtaacgccagg 669
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 710 atgctgttatacgccccactgccaaactttccaccaatatca-ccgagagtaacgccagg 652

                
Query: 670 aagag 674
           |||||
Sbjct: 651 aagag 647

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>gb|BT009170.1| Triticum aestivum clone wl1n.pk0102.e8:fis, full insert mRNA
           sequence
          Length = 2379

 Score =  161 bits (81), Expect = 4e-36
 Identities = 115/125 (92%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||
Sbjct: 877 ctcatcaacatttgatcccttggtatgcgcacatggtcaaatcgcagaacaccattgtcc 818

                                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacccgagagtaacgccagg 669
           || |||||||| || ||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct: 817 atactgttatatgcaccactgccaaattttccaccaatatcaccc-agagtaacaccagg 759

                
Query: 670 aagag 674
           |||||
Sbjct: 758 aagag 754

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>gb|AY104290.1| Zea mays PCO085555 mRNA sequence
          Length = 2558

 Score =  153 bits (77), Expect = 9e-34
 Identities = 114/125 (91%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||
Sbjct: 943 ctcatcaacatttgatcccttggtatgcgcacatggtcaaatcgcagaacaccattgtcc 884

                                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacccgagagtaacgccagg 669
           || |||||||| || ||||||||||| |||||||||||||||||| |||||||  |||||
Sbjct: 883 atactgttatatgcaccactgccaaattttccaccaatatcaccc-agagtaataccagg 825

                
Query: 670 aagag 674
           |||||
Sbjct: 824 aagag 820

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>gb|AY105897.1| Zea mays PCO085554 mRNA sequence
          Length = 2366

 Score =  149 bits (75), Expect = 1e-32
 Identities = 112/123 (91%), Gaps = 1/123 (0%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 875 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgaagaacaccattatcc 816

                                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacccgagagtaacgccagg 669
           || |||||||| || ||||| || |||||||||||||||||| ||||| ||||| |||||
Sbjct: 815 atactgttatatgcaccactaccgaactttccaccaatatca-ccgagggtaacaccagg 757

              
Query: 670 aag 672
           |||
Sbjct: 756 aag 754

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>ref|XM_476282.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2010

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 785 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 726

                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacc 653
           || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 725 atactgttgtatgcaccactaccaaattttccgccgatatcacc 682

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                          
Query: 550    ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
              |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 228936 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 228877

                                                          
Query: 610    atgctgttatacgccccactgccaaactttccaccaatatcacc 653
              || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 228876 atactgttgtatgcaccactaccaaattttccgccgatatcacc 228833

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>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0075G19
          Length = 163558

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                         
Query: 550   ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
             |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 93832 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 93773

                                                         
Query: 610   atgctgttatacgccccactgccaaactttccaccaatatcacc 653
             || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 93772 atactgttgtatgcaccactaccaaattttccgccgatatcacc 93729

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>dbj|AK100758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119B01, full
           insert sequence
          Length = 2636

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 949 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 890

                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacc 653
           || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 889 atactgttgtatgcaccactaccaaattttccgccgatatcacc 846

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>dbj|AK098983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M04, full
           insert sequence
          Length = 2385

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 892 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 833

                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacc 653
           || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 832 atactgttgtatgcaccactaccaaattttccgccgatatcacc 789

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>dbj|AK060849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E06, full
           insert sequence
          Length = 2445

 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                       
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
           |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 952 ctcatcaacatttgatcccttgggatgcgcacatggtcaaatcgcagaactccattatcc 893

                                                       
Query: 610 atgctgttatacgccccactgccaaactttccaccaatatcacc 653
           || ||||| || || ||||  ||||| ||||| || ||||||||
Sbjct: 892 atactgttgtatgcaccaccaccaaattttccgccgatatcacc 849

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>ref|XM_463579.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3852

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 325  gtgtgaacctcgcggtgctgcagcagatgcttgtgcatgaagaacttctttccacagcc 383
            |||||||||| ||| ||||||||||||| |||||||  |||||||||||| || |||||
Sbjct: 3635 gtgtgaaccttgcgatgctgcagcagatacttgtgcgagaagaacttcttcccgcagcc 3577

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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 325   gtgtgaacctcgcggtgctgcagcagatgcttgtgcatgaagaacttctttccacagcc 383
             |||||||||| ||| ||||||||||||| |||||||  |||||||||||| || |||||
Sbjct: 47260 gtgtgaaccttgcgatgctgcagcagatacttgtgcgagaagaacttcttcccgcagcc 47202

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 325      gtgtgaacctcgcggtgctgcagcagatgcttgtgcatgaagaacttctttccacagcc 383
                |||||||||| ||| ||||||||||||| |||||||  |||||||||||| || |||||
Sbjct: 39492818 gtgtgaaccttgcgatgctgcagcagatacttgtgcgagaagaacttcttcccgcagcc 39492760

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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 325   gtgtgaacctcgcggtgctgcagcagatgcttgtgcatgaagaacttctttccacagcc 383
             |||||||||| ||| ||||||||||||| |||||||  |||||||||||| || |||||
Sbjct: 67832 gtgtgaaccttgcgatgctgcagcagatacttgtgcgagaagaacttcttcccgcagcc 67774

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>dbj|AK068952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N18, full
            insert sequence
          Length = 4145

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 325  gtgtgaacctcgcggtgctgcagcagatgcttgtgcatgaagaacttctttccacagcc 383
            |||||||||| ||| ||||||||||||| |||||||  |||||||||||| || |||||
Sbjct: 3766 gtgtgaaccttgcgatgctgcagcagatacttgtgcgagaagaacttcttcccgcagcc 3708

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>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE
          Length = 89977

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 550   ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
             ||||| |||||||||| |||||| || || || ||||| || | |||||| |||||||||
Sbjct: 13529 ctcattaacatttgattccttggaattcgtacgtggtcaaatctcagaactccattatcc 13470

                        
Query: 610   atgctgttata 620
             ||| |||||||
Sbjct: 13469 atggtgttata 13459

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>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 73    aaatatgtttataaacatgcacat 96
             ||||||||||||||||||||||||
Sbjct: 16235 aaatatgtttataaacatgcacat 16258

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>gb|AY817111.1| Lycopersicon cheesmaniae peroxisomal acyl-CoA oxidase 1A (Acx1A) gene,
             complete cds
          Length = 30000

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 550   ctcatcaacatttgatcccttgggatgcgcac 581
             ||||||||||||||||| ||||| ||||||||
Sbjct: 15257 ctcatcaacatttgatctcttggaatgcgcac 15226

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>gb|AY817109.1| Lycopersicon esculentum peroxisomal acyl-CoA oxidase 1A (Acx1A)
           mRNA, complete cds; nuclear gene for peroxisomal protein
          Length = 2248

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 550 ctcatcaacatttgatcccttgggatgcgcac 581
           ||||||||||||||||| ||||| ||||||||
Sbjct: 877 ctcatcaacatttgatctcttggaatgcgcac 846

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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the
            complete sequence
          Length = 271869

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 73   aaatatgtttataaacatgcacat 96
            ||||||||||||||||||||||||
Sbjct: 5048 aaatatgtttataaacatgcacat 5025

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>gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete sequence
          Length = 120127

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 550  ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
            ||||| ||||||||||||||||| || || ||||| || || | |||||| ||||| |||
Sbjct: 4718 ctcattaacatttgatcccttggaatccgtacatgttcaaacctcagaaccccattgtcc 4659

                       
Query: 610  atgctgttata 620
            ||  |||||||
Sbjct: 4658 atagtgttata 4648

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>gb|AC149079.7| Medicago truncatula clone mth2-75i8, complete sequence
          Length = 121295

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 550   ctcatcaacatttgatcccttgggatgcgcacatggtcgaagcgcagaacaccattatcc 609
             ||||| ||||||||||||||||| || || ||||| || || | |||||| ||||| |||
Sbjct: 91553 ctcattaacatttgatcccttggaatccgtacatgttcaaacctcagaaccccattgtcc 91494

                        
Query: 610   atgctgttata 620
             ||  |||||||
Sbjct: 91493 atagtgttata 91483

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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 340     tgctgcagcagatgcttgtgca 361
               ||||||||||||||||||||||
Sbjct: 3352414 tgctgcagcagatgcttgtgca 3352393

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>emb|AL390958.15| Human DNA sequence from clone RP11-271D19 on chromosome 9, complete
             sequence
          Length = 65791

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 66    acaatgaaaatatgtttataaa 87
             ||||||||||||||||||||||
Sbjct: 60097 acaatgaaaatatgtttataaa 60076

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>gb|DQ123974.1| Coffea arabica x Coffea canephora clone HT-SSH1-C03 mRNA sequence
          Length = 383

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 550 ctcatcaacatttgatcccttgggatgcgcacatggtc 587
           ||||||||||||||||| ||||| || | |||||||||
Sbjct: 69  ctcatcaacatttgatctcttggaattctcacatggtc 106

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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 340    tgctgcagcagatgcttgtgca 361
              ||||||||||||||||||||||
Sbjct: 239001 tgctgcagcagatgcttgtgca 238980

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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14
          Length = 318050

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 340    tgctgcagcagatgcttgtgca 361
              ||||||||||||||||||||||
Sbjct: 189653 tgctgcagcagatgcttgtgca 189632

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 402     gcgctcatgcagggacagttca 423
               ||||||||||||||||||||||
Sbjct: 5077104 gcgctcatgcagggacagttca 5077083



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 182     cgctcatgcagggacagttc 201
               ||||||||||||||||||||
Sbjct: 5077103 cgctcatgcagggacagttc 5077084

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>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence
          Length = 174764

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 499   ggagtcctctcctctcctgtggctt 523
             |||||||||||||||||| ||||||
Sbjct: 26867 ggagtcctctcctctcctctggctt 26843

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>gb|AC133193.3| Mus musculus BAC clone RP23-396L1 from chromosome 2, complete sequence
          Length = 180931

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 498   tggagtcctctcctctcctgtggct 522
             |||||| ||||||||||||||||||
Sbjct: 16825 tggagtgctctcctctcctgtggct 16849

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>emb|AL592153.6| Human DNA sequence from clone RP11-58K1 on chromosome 9 Contains the 3'
              end of the C9orf93 gene for chromosome 9 open reading frame
              93, complete sequence
          Length = 160425

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    gcaagttgaaaaacaaattaa 126
              |||||||||||||||||||||
Sbjct: 116848 gcaagttgaaaaacaaattaa 116828

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>emb|AL354773.8| Human DNA sequence from clone RP5-855L24 on chromosome 20 Contains part
             of the C20orf133 gene, complete sequence
          Length = 117609

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    gaaaatatgtttataaacatg 91
             |||||||||||||||||||||
Sbjct: 76784 gaaaatatgtttataaacatg 76764

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>emb|AL160053.15| Human DNA sequence from clone RP11-536D16 on chromosome 9 Contains
            the 3' end of the variant for the C9orf93 gene for
            chromosome 9 open reading frame 93, complete sequence
          Length = 172845

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcaagttgaaaaacaaattaa 126
            |||||||||||||||||||||
Sbjct: 8715 gcaagttgaaaaacaaattaa 8695

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>emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chromosome 2, complete
             sequence
          Length = 148740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 498   tggagtcctctcctctcctgtggct 522
             |||||| ||||||||||||||||||
Sbjct: 28231 tggagtgctctcctctcctgtggct 28207

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>gb|AC020650.11| Homo sapiens 3 BAC RP11-165B13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 74000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   aacttctttccacagccatcc 387
             |||||||||||||||||||||
Sbjct: 72144 aacttctttccacagccatcc 72164

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>gb|AC026343.17| Homo sapiens 3 BAC RP11-384F7 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 168615

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 367 aacttctttccacagccatcc 387
           |||||||||||||||||||||
Sbjct: 120 aacttctttccacagccatcc 140

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    acctcgcggtgctgcagcaga 351
              |||||||||||||||||||||
Sbjct: 956313 acctcgcggtgctgcagcaga 956333

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>dbj|AB113906.1| Uncultured bacterium nifH gene for nitrogenase Fe protein, partial
           cds, clone:N8T10
          Length = 256

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 587 cgaagcgcagaacaccattat 607
           |||||||||||||||||||||
Sbjct: 25  cgaagcgcagaacaccattat 45

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>gb|AC012595.10| Homo sapiens BAC clone RP11-539J22 from 2, complete sequence
          Length = 170686

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 495   tcttggagtcctctcctctcc 515
             |||||||||||||||||||||
Sbjct: 28293 tcttggagtcctctcctctcc 28313



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   tcttggagtcctctcctctcc 293
             |||||||||||||||||||||
Sbjct: 28293 tcttggagtcctctcctctcc 28313

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>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18,
             complete sequence
          Length = 188895

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    accacaatgaaaatatgttta 83
             |||||||||||||||||||||
Sbjct: 20219 accacaatgaaaatatgttta 20239

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    cttgtgcatgaagaacttct 373
              ||||||||||||||||||||
Sbjct: 665190 cttgtgcatgaagaacttct 665171

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>gb|AY017822.1| Oryza sativa microsatellite MRG0147 containing (AG)X12, closest to
           marker C673, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 tcctctcctctcctgtggct 522
           ||||||||||||||||||||
Sbjct: 176 tcctctcctctcctgtggct 157

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>gb|U00042.1| Caenorhabditis elegans cosmid T04A6, complete sequence
          Length = 22880

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  gcaagttgaaaaacaaatta 125
            ||||||||||||||||||||
Sbjct: 3181 gcaagttgaaaaacaaatta 3200

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>gb|AC151464.2| Xenopus tropicalis BAC clone ISB1-213F14 containing three genes
            similar to X. laevis enhancer of split, complete cds,
            complete sequence
          Length = 22143

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   tgaaaatatgtttataaaca 89
            ||||||||||||||||||||
Sbjct: 8823 tgaaaatatgtttataaaca 8804

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>gb|AE008590.1| Rickettsia conorii str. Malish 7, section 22 of 114 of the complete
            genome
          Length = 12509

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  aattaacctagaggaagcat 140
            ||||||||||||||||||||
Sbjct: 8416 aattaacctagaggaagcat 8397

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>gb|AC124181.3| Mus musculus BAC clone RP23-204B12 from chromosome 18, complete sequence
          Length = 220244

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 70     tgaaaatatgtttataaacatgcacata 97
              ||||| ||||||||| ||||||||||||
Sbjct: 130919 tgaaactatgtttatgaacatgcacata 130892

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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     aattaacctagaggaagcat 140
               ||||||||||||||||||||
Sbjct: 1152626 aattaacctagaggaagcat 1152645

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>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence
          Length = 294829

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ctcgcggtgctgcagcagat 352
              ||||||||||||||||||||
Sbjct: 272449 ctcgcggtgctgcagcagat 272468



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ctcgcggtgctgcagcagat 352
              ||||||||||||||||||||
Sbjct: 265530 ctcgcggtgctgcagcagat 265549

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>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
          Length = 344249

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    gctgcttcgtcgtttcggtgtgaa 331
              |||||||||||||| |||||||||
Sbjct: 246929 gctgcttcgtcgttccggtgtgaa 246906

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>emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 in linkage group 24,
              complete sequence
          Length = 161221

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 10     atattnattttatcctcacacccacaa 36
              ||||| ||||||||||||||| |||||
Sbjct: 151528 atattaattttatcctcacacacacaa 151502

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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
             complete sequence
          Length = 168569

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aatgaaaatatgtttataaa 87
             ||||||||||||||||||||
Sbjct: 30888 aatgaaaatatgtttataaa 30869

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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
             complete sequence
          Length = 179432

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aatgaaaatatgtttataaa 87
             ||||||||||||||||||||
Sbjct: 68689 aatgaaaatatgtttataaa 68670

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>gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-conjugating enzyme
            (Bruce) mRNA, complete cds
          Length = 14794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 626  cactgccaaactttccacca 645
            ||||||||||||||||||||
Sbjct: 1520 cactgccaaactttccacca 1501

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>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13,
              complete sequence
          Length = 210138

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 66     acaatgaaaatatgtttataaacatgca 93
              ||||||| ||||| ||||||||||||||
Sbjct: 197080 acaatgataatatctttataaacatgca 197053

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>gb|AY119104.1| Drosophila melanogaster RE07981 full insert cDNA
          Length = 3617

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 626  cactgccaaactttccacca 645
            ||||||||||||||||||||
Sbjct: 1520 cactgccaaactttccacca 1501

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>gb|AC079065.8| Homo sapiens chromosome 8, clone RP11-49F13, complete sequence
          Length = 187837

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 285    ctcctctcctgtagccttcttcag 308
              ||||||||||||||||||| ||||
Sbjct: 148180 ctcctctcctgtagccttcatcag 148203

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>ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce), mRNA
          Length = 14793

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 626  cactgccaaactttccacca 645
            ||||||||||||||||||||
Sbjct: 1519 cactgccaaactttccacca 1500

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>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone
             BACR03L12, complete sequence
          Length = 190672

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   cactgccaaactttccacca 645
             ||||||||||||||||||||
Sbjct: 63109 cactgccaaactttccacca 63128

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>emb|BX323806.15| Zebrafish DNA sequence from clone DKEYP-123A9 in linkage group 19,
             complete sequence
          Length = 132427

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   tggttctcatcaacatttga 564
             ||||||||||||||||||||
Sbjct: 39397 tggttctcatcaacatttga 39378

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    tcctctcctctcctgtggct 522
              ||||||||||||||||||||
Sbjct: 796551 tcctctcctctcctgtggct 796532

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>gb|AC068389.10| Homo sapiens chromosome 8, clone RP11-91I20, complete sequence
          Length = 171515

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 285    ctcctctcctgtagccttcttcag 308
              ||||||||||||||||||| ||||
Sbjct: 163273 ctcctctcctgtagccttcatcag 163250

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>gb|AC079773.8| Homo sapiens BAC clone RP11-258B17 from 2, complete sequence
          Length = 129676

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    ctctcctgtggctttcttca 529
              ||||||||||||||||||||
Sbjct: 124120 ctctcctgtggctttcttca 124101

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>gb|AC010164.2|AC010164 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete
             sequence
          Length = 103443

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    taaacacatattacaccaca 68
             ||||||||||||||||||||
Sbjct: 42691 taaacacatattacaccaca 42672

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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1442_E05
          Length = 162407

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 503  tcctctcctctcctgtggct 522
            ||||||||||||||||||||
Sbjct: 5759 tcctctcctctcctgtggct 5740

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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   tcctctcctctcctgtggct 522
             ||||||||||||||||||||
Sbjct: 74682 tcctctcctctcctgtggct 74663

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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     gcaagttgaaaaacaaatta 125
               ||||||||||||||||||||
Sbjct: 1209732 gcaagttgaaaaacaaatta 1209751

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>emb|BX004966.12| Zebrafish DNA sequence from clone DKEY-5E12 in linkage group 19,
             complete sequence
          Length = 134336

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   tggttctcatcaacatttga 564
             ||||||||||||||||||||
Sbjct: 39228 tggttctcatcaacatttga 39209

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>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete
              sequence
          Length = 223505

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 626    cactgccaaactttccacca 645
              ||||||||||||||||||||
Sbjct: 167445 cactgccaaactttccacca 167464

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>dbj|AP002797.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-779P3, complete
             sequences
          Length = 185316

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    aatatgtttataaacatgcacata 97
             ||||||| ||||||||||||||||
Sbjct: 99323 aatatgtatataaacatgcacata 99346

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>emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on chromosome 1, complete
             sequence
          Length = 187003

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   cactgccaaactttccacca 645
             ||||||||||||||||||||
Sbjct: 96901 cactgccaaactttccacca 96882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,675,741
Number of Sequences: 3902068
Number of extensions: 6675741
Number of successful extensions: 350001
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 349458
Number of HSP's gapped (non-prelim): 540
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

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