ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 3e-40
2gb|AY108045.1| Zea mays PCO088666 mRNA sequence 165 8e-38
3gb|BT017445.1| Zea mays clone EL01N0406A03.c mRNA sequence 163 3e-37
4gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome... 109 4e-21
5gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome... 109 4e-21
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 109 4e-21
8gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 62 8e-07
9ref|XM_572900.1| Cryptococcus neoformans var. neoformans JEC21 s... 62 8e-07
10gb|BC045900.1| Danio rerio nucleolar protein family A, member 1 ... 54 2e-04
11ref|NM_200975.1| Danio rerio nucleolar protein family A, member ... 54 2e-04
12ref|XM_502208.1| Yarrowia lipolytica CLIB122, YALI0C24057g predi... 46 0.050
13emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 46 0.050
14ref|XM_791799.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.79
15ref|XM_530897.1| PREDICTED: Pan troglodytes LOC462425 (LOC462425... 40 3.1
16gb|AC123675.7| Mus musculus chromosome 15, clone RP23-271I6, com... 40 3.1
17gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome ... 40 3.1
18emb|X61595.1|HCVJK5 Hepatitis C virus (JK5) core, E1, NS1/E2 and... 40 3.1
19gb|AC079383.17| Homo sapiens Xp BAC RP11-30A20 (Roswell Park Can... 40 3.1
20emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chr... 40 3.1 
>dbj|AK121986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108P09, full
           insert sequence
          Length = 928

 Score =  172 bits (87), Expect = 3e-40
 Identities = 173/201 (86%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  ccctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaac 101
           ||||||||||| |||| |||||||||||| ||||  |||||||||||||| ||| |||||
Sbjct: 512 ccctttggctgtggcaagaagcgtgagagaggcaaaagcttcatggggtcgatgtagaac 453

                                                                       
Query: 102 ttatcaccttcgttgtaagatgttgcaatgactccctcaaacatcttgaccgagaaatat 161
           ||||| |||||  |||| || ||||||||||  ||||| | |||||| |  ||||||   
Sbjct: 452 ttatcgccttcactgtatgaagttgcaatgatcccctccagcatcttaatggagaaaagg 393

                                                                       
Query: 162 gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
           ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||
Sbjct: 392 gattcgttgatggggccgaagatctcgtc-gaccttgccgatctgggtcttgttctggag 334

                                
Query: 222 gtatatgggcgcgttaaagta 242
           ||| ||||||||||| |||||
Sbjct: 333 gtagatgggcgcgttgaagta 313
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>gb|AY108045.1| Zea mays PCO088666 mRNA sequence
          Length = 871

 Score =  165 bits (83), Expect = 8e-38
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  ccctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaac 101
           |||||||| |||||||||||||| || || |||||||  ||||||||||| ||  |||||
Sbjct: 551 ccctttggttgcggcaggaagcgcgaaagaggcagcaatttcatggggtcgatatagaac 492

                                                                       
Query: 102 ttatcaccttcgttgtaagatgttgcaatgactccctcaaacatcttgaccgagaaatat 161
           || || ||||| ||||| |||||||||||||  || || | |||||| || |||||||| 
Sbjct: 491 ttgtcgccttccttgtacgatgttgcaatgatcccttccatcatcttcacagagaaatag 432

                                                                       
Query: 162 gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
           ||||||||||||||||||||||||||| |  || ||||||| ||| ||||||||||| ||
Sbjct: 431 gattcgttgatggggccgaagatctcgtc-gaccttgccgacctgagtcttgttctgcag 373

                                
Query: 222 gtatatgggcgcgttaaagta 242
           ||||||||||||||| |||||
Sbjct: 372 gtatatgggcgcgttgaagta 352
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>gb|BT017445.1| Zea mays clone EL01N0406A03.c mRNA sequence
          Length = 866

 Score =  163 bits (82), Expect = 3e-37
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  ccctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaac 101
           |||||||| || ||||||||||||||||  |||||||  ||||| ||||| ||  |||||
Sbjct: 492 ccctttggttgtggcaggaagcgtgagaccggcagcaatttcattgggtcgatatagaac 433

                                                                       
Query: 102 ttatcaccttcgttgtaagatgttgcaatgactccctcaaacatcttgaccgagaaatat 161
           || || ||||| ||||| |||||||||||||  ||||| | |||||| || |||||||| 
Sbjct: 432 ttgtcgccttcattgtacgatgttgcaatgatcccctccatcatcttcacagagaaatag 373

                                                                       
Query: 162 gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
           ||||||||||||||||||||||||||  || || ||||||||||||||||||||||| ||
Sbjct: 372 gattcgttgatggggccgaagatctcttca-accttgccgatctgggtcttgttctgcag 314

                                
Query: 222 gtatatgggcgcgttaaagta 242
            || ||||||||||| |||||
Sbjct: 313 atagatgggcgcgttgaagta 293
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>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, complete sequence
          Length = 152272

 Score =  109 bits (55), Expect = 4e-21
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                         
Query: 162   gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
             ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||
Sbjct: 39197 gattcgttgatggggccgaagatctcgtc-gaccttgccgatctgggtcttgttctggag 39139

                                  
Query: 222   gtatatgggcgcgttaaagta 242
             ||| ||||||||||| |||||
Sbjct: 39138 gtagatgggcgcgttgaagta 39118



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 44    ctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaactt 103
             ||||||||| |||| |||||||||||| ||||  |||||||||||||| ||| |||||||
Sbjct: 39800 ctttggctgtggcaagaagcgtgagagaggcaaaagcttcatggggtcgatgtagaactt 39741

                                          
Query: 104   atcaccttcgttgtaagatgttgcaatga 132
             ||| |||||  |||| || ||||||||||
Sbjct: 39740 atcgccttcactgtatgaagttgcaatga 39712
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>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, sequencing in progress, complete sequence
          Length = 152272

 Score =  109 bits (55), Expect = 4e-21
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                         
Query: 162   gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
             ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||
Sbjct: 39197 gattcgttgatggggccgaagatctcgtc-gaccttgccgatctgggtcttgttctggag 39139

                                  
Query: 222   gtatatgggcgcgttaaagta 242
             ||| ||||||||||| |||||
Sbjct: 39138 gtagatgggcgcgttgaagta 39118



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 44    ctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaactt 103
             ||||||||| |||| |||||||||||| ||||  |||||||||||||| ||| |||||||
Sbjct: 39800 ctttggctgtggcaagaagcgtgagagaggcaaaagcttcatggggtcgatgtagaactt 39741

                                          
Query: 104   atcaccttcgttgtaagatgttgcaatga 132
             ||| |||||  |||| || ||||||||||
Sbjct: 39740 atcgccttcactgtatgaagttgcaatga 39712
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  109 bits (55), Expect = 4e-21
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                            
Query: 162      gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
                ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||
Sbjct: 21036882 gattcgttgatggggccgaagatctcgtc-gaccttgccgatctgggtcttgttctggag 21036824

                                     
Query: 222      gtatatgggcgcgttaaagta 242
                ||| ||||||||||| |||||
Sbjct: 21036823 gtagatgggcgcgttgaagta 21036803



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                            
Query: 44       ctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaactt 103
                ||||||||| |||| |||||||||||| ||||  |||||||||||||| ||| |||||||
Sbjct: 21037485 ctttggctgtggcaagaagcgtgagagaggcaaaagcttcatggggtcgatgtagaactt 21037426

                                             
Query: 104      atcaccttcgttgtaagatgttgcaatga 132
                ||| |||||  |||| || ||||||||||
Sbjct: 21037425 atcgccttcactgtatgaagttgcaatga 21037397
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  109 bits (55), Expect = 4e-21
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                            
Query: 162      gattcgttgatggggccgaagatctcgncanactttgccgatctgggtcttgttctggag 221
                ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||
Sbjct: 21347123 gattcgttgatggggccgaagatctcgtc-gaccttgccgatctgggtcttgttctggag 21347065

                                     
Query: 222      gtatatgggcgcgttaaagta 242
                ||| ||||||||||| |||||
Sbjct: 21347064 gtagatgggcgcgttgaagta 21347044



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                            
Query: 44       ctttggctgcggcaggaagcgtgagaggggcagcagcttcatggggtcaatgaagaactt 103
                ||||||||| |||| |||||||||||| ||||  |||||||||||||| ||| |||||||
Sbjct: 21347726 ctttggctgtggcaagaagcgtgagagaggcaaaagcttcatggggtcgatgtagaactt 21347667

                                             
Query: 104      atcaccttcgttgtaagatgttgcaatga 132
                ||| |||||  |||| || ||||||||||
Sbjct: 21347666 atcgccttcactgtatgaagttgcaatga 21347638
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                              
Query: 196     ttgccgatctgggtcttgttctggaggtatatgggcgcgttaaagta 242
               |||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 1064565 ttgccgatctgggtcttgttttggaggtagatgggggcgttgaagta 1064519
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>ref|XM_572900.1| Cryptococcus neoformans var. neoformans JEC21 small nucleolar RNP
           protein (CNI03970) partial mRNA
          Length = 685

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 196 ttgccgatctgggtcttgttctggaggtatatgggcgcgttaaagta 242
           |||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 242 ttgccgatctgggtcttgttttggaggtagatgggggcgttgaagta 196
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>gb|BC045900.1| Danio rerio nucleolar protein family A, member 1 (H/ACA small
           nucleolar RNPs), mRNA (cDNA clone MGC:56086
           IMAGE:5410477), complete cds
          Length = 1284

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 69  aggggcagcagcttcatggggtcaatgaagaactt 103
           ||||| ||||||||||||||||||||| |||||||
Sbjct: 518 aggggaagcagcttcatggggtcaatgtagaactt 484
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>ref|NM_200975.1| Danio rerio nucleolar protein family A, member 1 (H/ACA small
           nucleolar RNPs) (nola1), mRNA
          Length = 1284

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 69  aggggcagcagcttcatggggtcaatgaagaactt 103
           ||||| ||||||||||||||||||||| |||||||
Sbjct: 518 aggggaagcagcttcatggggtcaatgtagaactt 484
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>ref|XM_502208.1| Yarrowia lipolytica CLIB122, YALI0C24057g predicted mRNA
          Length = 606

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 196 ttgccgatctgggtcttgttctggaggtatatgggcgcgttaaagta 242
           ||||||| ||||||||||||||  ||||| ||||| ||||| |||||
Sbjct: 197 ttgccgacctgggtcttgttctcaaggtaaatgggggcgttgaagta 151
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 196     ttgccgatctgggtcttgttctggaggtatatgggcgcgttaaagta 242
               ||||||| ||||||||||||||  ||||| ||||| ||||| |||||
Sbjct: 3218600 ttgccgacctgggtcttgttctcaaggtaaatgggggcgttgaagta 3218646
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>ref|XM_791799.1| PREDICTED: Strongylocentrotus purpuratus similar to nucleolar
           protein family A, member 1 (H/ACA small nucleolar RNPs)
           (LOC592267), mRNA
          Length = 636

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 75  agcagcttcatggggtcaatgaagaactt 103
           |||||||||||||| || |||||||||||
Sbjct: 401 agcagcttcatgggatcgatgaagaactt 373
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>ref|XM_530897.1| PREDICTED: Pan troglodytes LOC462425 (LOC462425), mRNA
          Length = 751

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gatctgggtcttgttctgga 220
           ||||||||||||||||||||
Sbjct: 350 gatctgggtcttgttctgga 369
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>gb|AC123675.7| Mus musculus chromosome 15, clone RP23-271I6, complete sequence
          Length = 233422

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     cttcatggggtcaatgaaga 99
              ||||||||||||||||||||
Sbjct: 198819 cttcatggggtcaatgaaga 198800
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>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete
            sequence
          Length = 218870

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   cttcatggggtcaatgaaga 99
            ||||||||||||||||||||
Sbjct: 4675 cttcatggggtcaatgaaga 4656
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>emb|X61595.1|HCVJK5 Hepatitis C virus (JK5) core, E1, NS1/E2 and NS2 genes
          Length = 2672

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  gttgcaatgactccctcaaa 142
            ||||||||||||||||||||
Sbjct: 1607 gttgcaatgactccctcaaa 1626
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>gb|AC079383.17| Homo sapiens Xp BAC RP11-30A20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151276

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 64   gtgagaggggcagcagcttcatgg 87
            |||||| |||||||||||||||||
Sbjct: 5245 gtgagaagggcagcagcttcatgg 5222
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>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete
             sequence
          Length = 172826

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aatgaagaacttatcacctt 111
             ||||||||||||||||||||
Sbjct: 17485 aatgaagaacttatcacctt 17466


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,376,696
Number of Sequences: 3902068
Number of extensions: 1376696
Number of successful extensions: 29719
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29666
Number of HSP's gapped (non-prelim): 46
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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