ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22f17 |
|---|---|
| Clone Library Name | barley_pub |
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 80.9 bits (198), Expect = 3e-15 Identities = 47/152 (30%), Positives = 79/152 (51%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F AL G I+S +WL QS K G F+ E+V+ D E + + +R+A+ R Sbjct: 1883 RIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLREALSR 1942 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L GY +T ++P P + +I GG ++ + +P + + + C + Sbjct: 1943 ARERK--LLEGYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPRSYKPQRVV-ITCSQDF 1999 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 + G+ S E+L+T V++QE EA Sbjct: 2000 PRCSVPFRLGLPVLSPEFLLTGVLKQEAKPEA 2031
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 79.0 bits (193), Expect = 1e-14 Identities = 47/152 (30%), Positives = 78/152 (51%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F AL G I+S +WL QS K G F+ E+V+ D E + + ++DA+ R Sbjct: 2012 RIRRTVKFLCALGRGIPILSLDWLHQSHKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSR 2071 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L GY +T ++P P + +I GG + + +P + + + C + Sbjct: 2072 ARER--RLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVV-ITCPQDF 2128 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 + G+ S E+L+T V++QE EA Sbjct: 2129 PHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEA 2160
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 78.6 bits (192), Expect = 1e-14 Identities = 47/152 (30%), Positives = 78/152 (51%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F AL G I+S +WL QS K G F+ E+V+ D E + + ++DA+ R Sbjct: 2014 RIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLQDALSR 2073 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L GY +T ++P P + +I GG + + +P + + + C + Sbjct: 2074 ARER--RLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVV-ITCPQDF 2130 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 + G+ S E+L+T V++QE EA Sbjct: 2131 PRCSVPLRVGLPLLSPEFLLTGVLKQEAKPEA 2162
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 78.2 bits (191), Expect = 2e-14 Identities = 47/152 (30%), Positives = 78/152 (51%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F AL G I+S +WL QS K G F+ E+V+ D E + + ++DA+ R Sbjct: 1930 RIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSR 1989 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L GY +T ++P P + +I GG + + +P + + + C + Sbjct: 1990 ARER--RLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVV-ITCPQDF 2046 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 + G+ S E+L+T V++QE EA Sbjct: 2047 PHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEA 2078
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 77.8 bits (190), Expect = 3e-14 Identities = 45/152 (29%), Positives = 80/152 (52%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F A+ G I+S NWL QS K G F+ ++++ D E + + +RD++ R Sbjct: 1123 RIRRTVKFLCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSR 1182 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L Y +T ++P P + +I GG ++ + + + + + C E + Sbjct: 1183 ARER--RLLEDYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPHSYKLHRVV-ITCTEDL 1239 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 A++ G+ S E+L+T V++QE EA Sbjct: 1240 PRCAIASRLGLPLLSPEFLLTGVLKQEATPEA 1271
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 76.3 bits (186), Expect = 7e-14 Identities = 46/152 (30%), Positives = 78/152 (51%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 + RRT+ F AL G I+S NWL QS K G F+ ++++ D E + + +RD++ R Sbjct: 1548 RIRRTVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCR 1607 Query: 459 AKERPCLLFSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACEEGM 280 A+ER L Y +T ++P P + +I GG + + + + I + C E + Sbjct: 1608 ARER--RLLEDYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVI-ITCTEDL 1664 Query: 279 ELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEA 184 ++ G+ S E+L+T V++QE EA Sbjct: 1665 PRCAIPSRLGLPLLSPEFLLTGVLKQEATPEA 1696
>BRC1_SCHPO (Q10337) BRCT-containing protein 1| Length = 878 Score = 56.6 bits (135), Expect = 6e-08 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 14/161 (8%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMRAKE 451 RT F ++ G +V+ +W+ K + V E ++L+D E +++ + A+ RA+ Sbjct: 707 RTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKRARA 766 Query: 450 RPCLLFSGYTFCLT-KHIEPS--PGVLSPVIKSSGG-----KIINK-LDDIDEPSKTIFL 298 + L Y LT K + P P V+S ++KS+GG + NK L E + + Sbjct: 767 QGPSLLEDYVVYLTSKTVAPENVPAVIS-IVKSNGGVCSTLNVYNKRLARHLEDGNVVLI 825 Query: 297 ACEEGMEL---AMDAAKRGIKTF--SSEWLMTCVMRQEVDL 190 C E + +D A + F + +WL+ V+RQE+D+ Sbjct: 826 TCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDV 866
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMK---YKSEMRDAVMR 460 RT+ + ++ G W+VS W+ QS K+GK +LD+ +++++ R Sbjct: 1692 RTLKYFLGIAGGKWVVSYFWVTQSIKEGK-------MLDEHDFEVRGDVVNGRNHQGPKR 1744 Query: 459 AKE-RPCLLFSGYTFC 415 A+E R +F G C Sbjct: 1745 ARESRDKKIFKGLEIC 1760
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 35.4 bits (80), Expect = 0.15 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 RT+ + ++ G W+VS W+ QS K+GK + E Sbjct: 1699 RTLKYFLGIAGGKWVVSYFWVTQSIKEGKMLNE 1731
>MCPH1_MOUSE (Q7TT79) Microcephalin| Length = 822 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDD 511 GK+ RT+N ++ G WI+S W+ S + G ++ E L + Sbjct: 676 GKSARTLNVLMGIARGCWILSYEWVLLSLELGHWISEEPFELSE 719
>MCPH1_MACFA (Q5IFK1) Microcephalin| Length = 842 Score = 34.3 bits (77), Expect = 0.32 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G+++ E Sbjct: 696 GKPLRTLNVLLGIARGCWVLSYDWVLWSLESGQWISE 732
>MCPH1_COLGU (P61590) Microcephalin| Length = 841 Score = 33.9 bits (76), Expect = 0.42 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDD 511 GK RT+N ++ G W++S +W+ S + G ++ E L + Sbjct: 695 GKPLRTLNVLLGIARGCWVLSYDWVLWSLESGHWISEESFELSN 738
>MCPH1_PONPY (P61594) Microcephalin| Length = 839 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G ++ E Sbjct: 693 GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 729
>MCPH1_HYLLA (P61592) Microcephalin| Length = 840 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G ++ E Sbjct: 693 GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 729
>MCPH1_PANTR (P61593) Microcephalin| Length = 835 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G ++ E Sbjct: 689 GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 725
>MCPH1_HUMAN (Q8NEM0) Microcephalin| Length = 835 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G ++ E Sbjct: 689 GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 725
>MCPH1_GORGO (P61591) Microcephalin| Length = 835 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 GK RT+N ++ G W++S +W+ S + G ++ E Sbjct: 689 GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 725
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 RT+ + ++ G W+VS W+ QS K+ K + E Sbjct: 1699 RTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNE 1731
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 RT+ + ++ G W+VS W+ QS K+ K + E Sbjct: 1699 RTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNE 1731
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 RT+ + ++ G W+VS W+ QS K+ K + E Sbjct: 1699 RTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNE 1731
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGE 532 RT+ + ++ G W+VS W+ QS K+ K + E Sbjct: 1699 RTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNE 1731
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMK 493 RT+ + ++ G W+VS W+ QS K+ K +LD+ +++++ Sbjct: 1702 RTLKYFLGIAGGKWVVSYFWVTQSIKERK-------ILDEHDFEVR 1740
>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 768 Score = 31.2 bits (69), Expect = 2.7 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 25/173 (14%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 +A+ T+ + +G W++ +W+K LD +E + + K E+ R Sbjct: 604 EAQSTLKCMLGILNGCWVLKFDWVKA-------------CLDSQEREQEEKYEVPGGPQR 650 Query: 459 AK-ERPCL---LFSGYTFCLTKHIEPSPGV-LSPVIKSSGGKIINK-------------- 337 ++ R L LF G F L + + P L +I ++GG+I+++ Sbjct: 651 SRLNREQLLPKLFDGCYFFLGGNFKHHPKEDLLKLIAAAGGRILSRKPKPDSDVTQTINT 710 Query: 336 -----LDDIDEPSKTIFLACEEGMELAMDAAKRG-IKTFSSEWLMTCVMRQEV 196 D D+ T ++ E+ + ++G + S WL++CVM E+ Sbjct: 711 VAYHAKPDSDQRFCTQYIVYEDLFNCHPERVRQGKVWMAPSTWLISCVMAFEL 763
>ISPH_XANCP (Q8PBG4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -3 Query: 369 IKSSGGKIINKLDDIDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDL 190 +K G + +LD++ + + IF A + ++A +RG+K F + TC + +V Sbjct: 49 LKQRGAIFVEELDEVPDDATVIFSAHGVSQAVRVEAERRGLKVFDA----TCPLVTKVHF 104 Query: 189 E 187 E Sbjct: 105 E 105
>DNLI_CANAL (P52496) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 928 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Frame = -3 Query: 438 LFSGYTFCLTKHIEPSPGVLSPV------IKSSGGKIINKLDDIDEPSKTIFLACEEGME 277 LFSG F + + G ++ + +K GGKI+N +D + I + E + Sbjct: 677 LFSGIEFLIMSDKREADGEVTRIEEMKAMVKQYGGKIVNSVD--LATNYQIMVITERELP 734 Query: 276 LAMDAAKRGIKTFSSEWLMTCVMR 205 ++ +GI W+ C+ R Sbjct: 735 VSSQYLSKGIDLVKPIWIYECIKR 758
>ISPH_XANAC (Q8PN17) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -3 Query: 369 IKSSGGKIINKLDDIDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDL 190 +K G + +LD++ + + IF A + +A +RG+K F + TC + +V Sbjct: 49 LKQRGAIFVEELDEVPDDATVIFSAHGVSQAVRQEAERRGLKVFDA----TCPLVTKVHF 104 Query: 189 E 187 E Sbjct: 105 E 105
>YDW1_SCHPO (O13909) Hypothetical protein C23C11.01 in chromosome I| Length = 441 Score = 30.8 bits (68), Expect = 3.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 447 PCLLFSGYTFCLTKHIEPSPGVLSPV 370 PC+L + YT L +H+ P+P SPV Sbjct: 371 PCILIAVYTNLLLQHLYPTPSFTSPV 396
>KPRS_PYRFU (Q8U458) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 279 Score = 30.4 bits (67), Expect = 4.7 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%) Frame = -3 Query: 543 FVGEAEHVLDDEEYKMKYKSEMRDAVMRAKERPCL---------LFSGYTFCLTKHIEPS 391 F G AE++L +E + ++ + ++ A ++ L L Y+ K I P+ Sbjct: 129 FPGRAENILPSKEIAEYFSDKLGEGIILAPDKGALERAKAIAEILGLEYSHFEKKRISPT 188 Query: 390 PGVLSPVIKSSGGKIINKLDDIDEPSKTIFLACE----EGMELAMDAAKRGI 247 ++PV GK + +DDI T+ A E G E AA G+ Sbjct: 189 EVQMTPVNIDVKGKNVLIVDDIISTGGTMIKATEILRKLGAEKVFVAATHGV 240
>UGA4_YEAST (P32837) GABA-specific permease (GABA-specific transport protein)| Length = 571 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/64 (26%), Positives = 34/64 (53%) Frame = -3 Query: 642 GKARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVM 463 G + TMN+ + G WI++ + K +K+ + G A + L D++Y +++ D +M Sbjct: 509 GITKSTMNYACVIGPGIWILAGIYYK-VYKKKYYHGPATN-LSDDDYTEAVGADVIDTIM 566 Query: 462 RAKE 451 +E Sbjct: 567 SKQE 570
>ISPH_HAEDU (Q7VPK4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 314 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/61 (24%), Positives = 32/61 (52%) Frame = -3 Query: 369 IKSSGGKIINKLDDIDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDL 190 +K+ G + +LD++ + + IF A + +A +RG+K F + TC + +V + Sbjct: 49 LKAKGAIFVEELDEVPDSAIVIFSAHGVSQAVRQEAKRRGLKVFDA----TCPLVTKVHM 104 Query: 189 E 187 + Sbjct: 105 Q 105
>PPK1_CHLTE (P58991) Polyphosphate kinase 1 (EC 2.7.4.1) (Polyphosphoric acid| kinase 1) (ATP-polyphosphate phosphotransferase 1) Length = 698 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Frame = -3 Query: 435 FSGYTFCLTKHIEPSPGVLSPVI-------KSSGGKIINKLDDIDEPS--KTIFLACEEG 283 ++GY F L I ++ + KSSGG+II K++ + +P+ + ++ A G Sbjct: 499 YTGYRFLLVSPINTRKRIIEMIEREIALARKSSGGRIIMKMNSLVDPATIQALYRASRAG 558 Query: 282 MELAMDAAKRGI 247 +++ D RGI Sbjct: 559 VQI--DLVVRGI 568
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMK---YKSEMRDAVMR 460 RT+ + ++ G WIVS +W+ +S ++ K +L E+++K R Sbjct: 1645 RTLKYFLGIAGGKWIVSYSWVIKSIQERK-------LLSVHEFEVKGDVVTGSNHQGPRR 1697 Query: 459 AKERPCLLFSG-YTFCLTKHIEPSPGVLSPVIKSSGGKIINKL 334 ++E LF G +C L +++ G ++ +L Sbjct: 1698 SRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKEL 1740
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Frame = -3 Query: 630 RTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAE-HVLDDEEYKMKYKSEMRDAVMRAK 454 RT+ + ++ G WIVS +W+ +S ++ + + E V D ++ R R K Sbjct: 1642 RTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVTGDVVTGRNHQGPRRSRESREK 1701 Query: 453 ERPCLLFSG-YTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDI 325 LF G +C L +++ G ++ +L + Sbjct: 1702 -----LFKGLQVYCCDPFTNMPKDDLERMLQLCGASVVKELPSL 1740
>SYTL2_MOUSE (Q99N50) Synaptotagmin-like protein 2 (Exophilin-4)| Length = 950 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Frame = -3 Query: 573 WLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMRAKERPCLLFS---GYTFCLTKH 403 W + +FK+ F+GE E L+ ++ K +++ ++ K P L + G ++ Sbjct: 735 WHRDTFKRNSFLGEVELDLETWDWDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 794 Query: 402 I-EPSPGVLSP 373 + EPSPG P Sbjct: 795 VPEPSPGKKLP 805
>ISPH_XANOR (Q5H2D9) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -3 Query: 369 IKSSGGKIINKLDDIDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDL 190 +K G + +LD++ + + IF A + +A +RG+K F + TC + +V Sbjct: 49 LKQRGAIFVEELDEVPDDATVIFSAHGVPQAVRQEAERRGLKVFDA----TCPLVTKVHF 104 Query: 189 E 187 E Sbjct: 105 E 105
>BARD1_MOUSE (O70445) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 765 Score = 29.6 bits (65), Expect = 8.0 Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 21/169 (12%) Frame = -3 Query: 639 KARRTMNFCTALSSGAWIVSPNWLKQSFKQGKFVGEAEHVLDDEEYKMKYKSEMRDAVMR 460 +A+ T+ + SG WI+ +W+K + + ++E K + + + + Sbjct: 601 EAQSTLKCMLGILSGCWILKFDWVKACL---------DSKVREQEEKYEVPGGPQRSRLN 651 Query: 459 AKERPCLLFSGYTFCLTKHIEPSP-GVLSPVIKSSGGKIINKL----DDIDEPSKTI--- 304 ++ LF G F L + + P L +I ++GGK++++ D+ + T+ Sbjct: 652 REQLLPKLFDGCYFFLGGNFKHHPRDDLLKLIAAAGGKVLSRKPKPDSDVTQTINTVAYH 711 Query: 303 ------------FLACEEGMELAMDAAKRG-IKTFSSEWLMTCVMRQEV 196 ++ E+ + ++G + S WL++C+M E+ Sbjct: 712 AKPESDQRFCTQYIVYEDLFNCHPERVRQGKVWMAPSTWLISCIMAFEL 760
>ISPH_PROAC (Q6AA89) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 323 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/66 (24%), Positives = 34/66 (51%) Frame = -3 Query: 369 IKSSGGKIINKLDDIDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDL 190 ++ G +++LD++ + + +F A ++ +A RG++T + TC + +V Sbjct: 58 LEGRGAIFVDELDEVPDDALVVFSAHGVSPQVKKEATDRGLRTIDA----TCPLVTKVHH 113 Query: 189 EAPPFA 172 EA FA Sbjct: 114 EAKRFA 119
>GCSP_AGRT5 (Q8UFD6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 954 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 435 FSGYTFCLTKHIEPSPGVLSPVIKSSGGKIINKLDDIDEPS 313 + Y F +HI PSP ++ ++K G K ++ L D PS Sbjct: 12 YQPYDFANRRHIGPSPSEMAEMLKVVGYKSLDALIDATVPS 52
>HYDA_BURPI (Q8VTT5) D-hydantoinase (EC 3.5.2.2) (Dihydropyrimidinase) (DHPase)| Length = 457 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3 Query: 327 IDEPSKTIFLACEEGMELAMDAAKRGIKTFSSEWLMTCVMRQEVDLEAPPF 175 ++ P + + CEE +E M A RG++ + + +E DLE P F Sbjct: 229 VNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKE-DLERPDF 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,736,308 Number of Sequences: 219361 Number of extensions: 1778280 Number of successful extensions: 4647 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4640 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
