Clone Information

BLAST Search Result

Clone Name	rbags22f17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK073218.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	353	5e-94
2	gb\|AC120987.2\| Oryza sativa (japonica cultivar-group) chromosome...	153	8e-34
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	8e-34
4	gb\|AY461631.1\| Arabidopsis thaliana At2g41450 mRNA, partial sequ...	46	0.14
5	gb\|AC004625.3\| Arabidopsis thaliana chromosome 2 clone T26J13 ma...	46	0.14
6	gb\|AF110520.1\|MMHC425O18 Mus musculus major histocompatibility c...	44	0.56
7	emb\|CT030732.13\| Mouse DNA sequence from clone RP23-27D5 on chro...	44	0.56
8	gb\|AY208458.1\| Neopomacentrus miryae isolate stri-x-2885 ATP syn...	42	2.2
9	ref\|XM_946762.1\| Theileria annulata strain Ankara hypothetical p...	42	2.2
10	emb\|AL031780.1\|HS470K1 Human DNA sequence from clone RP3-470K1 o...	42	2.2
11	gb\|AC117708.10\| Mus musculus chromosome 7, clone RP23-474J16, co...	42	2.2
12	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	42	2.2
13	emb\|Z78854.1\|HSPA18C12 H.sapiens flow-sorted chromosome 6 HindII...	42	2.2
14	gb\|AE017343.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.8
15	gb\|AC103597.21\| Mus musculus chromosome 18, clone RP23-435G4, co...	40	8.8
16	gb\|AC164164.3\| Mus musculus BAC clone RP23-180E6 from chromosome...	40	8.8
17	gb\|AC140249.2\| Mus musculus BAC clone RP24-285O1 from chromosome...	40	8.8
18	gb\|AY524776.1\| Danio rerio Pard3 180 kDa isoform mRNA, complete ...	40	8.8
19	gb\|AY524777.1\| Danio rerio Pard3 150 kDa isoform mRNA, complete ...	40	8.8
20	emb\|BX088693.15\| Zebrafish DNA sequence from clone CH211-212E22 ...	40	8.8
21	ref\|XM_569356.1\| Cryptococcus neoformans var. neoformans JEC21 l...	40	8.8
22	emb\|AL359894.9\| Human DNA sequence from clone RP11-379C1 on chro...	40	8.8
23	emb\|AL009051.1\|HS747L4 Human DNA sequence from clone RP4-747L4 o...	40	8.8
24	emb\|AL627263.6\| Zebrafish DNA sequence from clone RP71-1L9 in li...	40	8.8
25	emb\|BX901878.6\| Zebrafish DNA sequence from clone DKEY-11O15 in ...	40	8.8
26	emb\|BX284112.25\| Zebrafish DNA sequence from clone DKEYP-75A7 in...	40	8.8
27	emb\|AL805940.7\| Mouse DNA sequence from clone RP24-286B19 on chr...	40	8.8
28	gb\|AC089982.15\| Homo sapiens 12 BAC RP11-25I15 (Roswell Park Can...	40	8.8
29	dbj\|AK143456.1\| Mus musculus 14 days embryo eyeball cDNA, RIKEN ...	40	8.8
30	gb\|AY660003.1\| Crassostrea gigas cytoplasmic aspartate aminotran...	40	8.8
31	gb\|AC158502.3\| Medicago truncatula chromosome 7 BAC clone mth2-7...	40	8.8
32	gb\|AC154792.2\| Mus musculus BAC clone RP23-85E10 from chromosome...	40	8.8
33	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
34	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
35	gb\|AC073913.23\| Homo sapiens 12 BAC RP11-955H22 (Roswell Park Ca...	40	8.8
36	dbj\|AP003409.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
37	dbj\|AB092341.1\| Gallus gallus germline DNA, T cell receptor beta...	40	8.8
38	gb\|AC009476.3\| Homo sapiens BAC clone RP11-207O14 from 2, comple...	40	8.8
39	dbj\|AP003956.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
40	dbj\|AP003864.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
41	dbj\|BS000040.1\| Pan troglodytes chromosome 22 clone:PTB-075B06, ...	40	8.8
42	dbj\|AB006153.1\| Oncorhynchus mykiss mRNA for tFZR1, complete cds	40	8.8

>dbj|AK073218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033014F21, full
            insert sequence
          Length = 2224

 Score =  353 bits (178), Expect = 5e-94
 Identities = 409/486 (84%)
 Strand = Plus / Minus

                                                                        
Query: 159  atcagagagattctgcaaacgggggcgcctcaagatcaacctcttgcctcatgacacagg 218
            ||||||||||||| |  ||| | || |||||||| |||| ||||||  ||||||||||| 
Sbjct: 1969 atcagagagattcagtgaactgaggggcctcaaggtcaagctcttgtgtcatgacacagc 1910

                                                                        
Query: 219  tcatgagccactcactgctgaatgtctttatgcctctttttgctgcatccattgcaagct 278
            ||| || |||||||| ||||||||| || |||||||||||||| ||||||| |||||| |
Sbjct: 1909 tcaagaaccactcaccgctgaatgttttgatgcctctttttgcagcatccaatgcaagtt 1850

                                                                        
Query: 279  ccatgccttcttcacaagccaagaagattgtctttgagggctcatctatgtcatccagct 338
            ||||  |||||||||| || ||||||||||||||  |||||| |  ||||||||||||||
Sbjct: 1849 ccatatcttcttcacacgctaagaagattgtcttcaagggctgagttatgtcatccagct 1790

                                                                        
Query: 339  tattgatgatcttgccaccagaggatttgataactggagagaggacaccaggagagggtt 398
            ||||||||| |||||||||||| ||||| || |   ||||||| |||      ||||| |
Sbjct: 1789 tattgatgagcttgccaccagaagatttaatgatgcgagagagaacattgacggagggct 1730

                                                                        
Query: 399  cgatgtgcttggtcaaacagaaagtgtagccagaaaataataagcaaggcctctctttag 458
             ||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1729 ggatgttcttcgtcagacagaaagtgtagccagaaaataatgagcaaggcctctctttag 1670

                                                                        
Query: 459  ccctcataaccgcatctctcatttcagacttgtacttcatcttatattcttcatcatcca 518
            | |||| ||| |||||||||| |||||||||||| |||| |||| |||| ||||| |  |
Sbjct: 1669 ctctcacaactgcatctctcagttcagacttgtatttcaccttaaattcatcatcttgaa 1610

                                                                        
Query: 519  gaacatgttctgcttcacctacaaatttcccttgtttaaagctctgttttagccaatttg 578
             ||||| ||||||||| |||||||||||||||| ||| ||||| |  || ||||| ||||
Sbjct: 1609 aaacatattctgcttctcctacaaatttcccttttttgaagctttccttcagccactttg 1550

                                                                        
Query: 579  gagaaactatccaagccccagagctcaaagcagtacaaaagttcatagtccttcgagctt 638
            ||||||||||||| || ||||||| ||||||| |||| || ||||||||| ||||| |||
Sbjct: 1549 gagaaactatccaggctccagagcacaaagcaatacagaaattcatagtcattcgaactt 1490

                  
Query: 639  ttccag 644
            ||||||
Sbjct: 1489 ttccag 1484

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>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0007A06, complete sequence
          Length = 148029

 Score =  153 bits (77), Expect = 8e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                         
Query: 159   atcagagagattctgcaaacgggggcgcctcaagatcaacctcttgcctcatgacacagg 218
             ||||||||||||| |  ||| | || |||||||| |||| ||||||  ||||||||||| 
Sbjct: 61699 atcagagagattcagtgaactgaggggcctcaaggtcaagctcttgtgtcatgacacagc 61758

                                                                         
Query: 219   tcatgagccactcactgctgaatgtctttatgcctctttttgctgcatccattgcaagct 278
             ||| || |||||||| ||||||||| || |||||||||||||| ||||||| |||||| |
Sbjct: 61759 tcaagaaccactcaccgctgaatgttttgatgcctctttttgcagcatccaatgcaagtt 61818

                                                                         
Query: 279   ccatgccttcttcacaagccaagaagattgtctttgagggctcatctatgtcatccagct 338
             ||||  |||||||||| || ||||||||||||||  |||||| |  ||||||||||||||
Sbjct: 61819 ccatatcttcttcacacgctaagaagattgtcttcaagggctgagttatgtcatccagct 61878

                      
Query: 339   tattgatga 347
             |||||||||
Sbjct: 61879 tattgatga 61887



 Score =  135 bits (68), Expect = 2e-28
 Identities = 122/140 (87%)
 Strand = Plus / Plus

                                                                         
Query: 400   gatgtgcttggtcaaacagaaagtgtagccagaaaataataagcaaggcctctctttagc 459
             ||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62547 gatgttcttcgtcagacagaaagtgtagccagaaaataatgagcaaggcctctctttagc 62606

                                                                         
Query: 460   cctcataaccgcatctctcatttcagacttgtacttcatcttatattcttcatcatccag 519
              |||| ||| |||||||||| |||||||||||| |||| |||| |||| ||||| |  | 
Sbjct: 62607 tctcacaactgcatctctcagttcagacttgtatttcaccttaaattcatcatcttgaaa 62666

                                 
Query: 520   aacatgttctgcttcaccta 539
             ||||| ||||||||| ||||
Sbjct: 62667 aacatattctgcttctccta 62686



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 533   tcacctacaaatttcccttgtttaaagctctgttttagccaatttggagaaactatcca 591
             ||||||||||||||||||| ||| ||||| |  || ||||| |||||||||||||||||
Sbjct: 62957 tcacctacaaatttcccttttttgaagctttccttcagccactttggagaaactatcca 63015

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  153 bits (77), Expect = 8e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                            
Query: 159      atcagagagattctgcaaacgggggcgcctcaagatcaacctcttgcctcatgacacagg 218
                ||||||||||||| |  ||| | || |||||||| |||| ||||||  ||||||||||| 
Sbjct: 18026372 atcagagagattcagtgaactgaggggcctcaaggtcaagctcttgtgtcatgacacagc 18026431

                                                                            
Query: 219      tcatgagccactcactgctgaatgtctttatgcctctttttgctgcatccattgcaagct 278
                ||| || |||||||| ||||||||| || |||||||||||||| ||||||| |||||| |
Sbjct: 18026432 tcaagaaccactcaccgctgaatgttttgatgcctctttttgcagcatccaatgcaagtt 18026491

                                                                            
Query: 279      ccatgccttcttcacaagccaagaagattgtctttgagggctcatctatgtcatccagct 338
                ||||  |||||||||| || ||||||||||||||  |||||| |  ||||||||||||||
Sbjct: 18026492 ccatatcttcttcacacgctaagaagattgtcttcaagggctgagttatgtcatccagct 18026551

                         
Query: 339      tattgatga 347
                |||||||||
Sbjct: 18026552 tattgatga 18026560



 Score =  135 bits (68), Expect = 2e-28
 Identities = 122/140 (87%)
 Strand = Plus / Plus

                                                                            
Query: 400      gatgtgcttggtcaaacagaaagtgtagccagaaaataataagcaaggcctctctttagc 459
                ||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 18027220 gatgttcttcgtcagacagaaagtgtagccagaaaataatgagcaaggcctctctttagc 18027279

                                                                            
Query: 460      cctcataaccgcatctctcatttcagacttgtacttcatcttatattcttcatcatccag 519
                 |||| ||| |||||||||| |||||||||||| |||| |||| |||| ||||| |  | 
Sbjct: 18027280 tctcacaactgcatctctcagttcagacttgtatttcaccttaaattcatcatcttgaaa 18027339

                                    
Query: 520      aacatgttctgcttcaccta 539
                ||||| ||||||||| ||||
Sbjct: 18027340 aacatattctgcttctccta 18027359



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 533      tcacctacaaatttcccttgtttaaagctctgttttagccaatttggagaaactatcca 591
                ||||||||||||||||||| ||| ||||| |  || ||||| |||||||||||||||||
Sbjct: 18027630 tcacctacaaatttcccttttttgaagctttccttcagccactttggagaaactatcca 18027688

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>gb|AY461631.1| Arabidopsis thaliana At2g41450 mRNA, partial sequence
          Length = 1135

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 202 ttgcctcatgacacaggtcatgagccactcactgctgaatgtc 244
           |||| ||||||||||| |||||| ||| || ||||||||||||
Sbjct: 900 ttgcttcatgacacagttcatgaaccattcgctgctgaatgtc 858

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>gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 map CIC11C08, complete
             sequence
          Length = 42499

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 202   ttgcctcatgacacaggtcatgagccactcactgctgaatgtc 244
             |||| ||||||||||| |||||| ||| || ||||||||||||
Sbjct: 14832 ttgcttcatgacacagttcatgaaccattcgctgctgaatgtc 14790

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>gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibility complex region NG27, NG28, RPS28,
             NADH oxidoreductase, NG29, KIFC1, Fas-binding protein,
             BING1, tapasin, RalGDS-like, KE2, BING4, beta
             1,3-galactosyl transferase, and RPS18 genes, complete cds;
             Sacm21 gene, partial cds; and unknown gene
          Length = 213245

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   ggcctctctttagccctcataa 467
             ||||||||||||||||||||||
Sbjct: 16179 ggcctctctttagccctcataa 16200

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>emb|CT030732.13| Mouse DNA sequence from clone RP23-27D5 on chromosome 17, complete
             sequence
          Length = 220163

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   ggcctctctttagccctcataa 467
             ||||||||||||||||||||||
Sbjct: 78759 ggcctctctttagccctcataa 78780

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>gb|AY208458.1| Neopomacentrus miryae isolate stri-x-2885 ATP synthase 8 and ATP
           synthase 6 genes, complete cds; mitochondrial genes for
           mitochondrial products
          Length = 842

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 114 gtaagtataagttcagcccct 134
           |||||||||||||||||||||
Sbjct: 140 gtaagtataagttcagcccct 120

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>ref|XM_946762.1| Theileria annulata strain Ankara hypothetical protein (TA15520)
            partial mRNA
          Length = 2706

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 403  gtgcttggtcaaacagaaagt 423
            |||||||||||||||||||||
Sbjct: 1351 gtgcttggtcaaacagaaagt 1371

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>emb|AL031780.1|HS470K1 Human DNA sequence from clone RP3-470K1 on chromosome 6p22.1-23, complete
              sequence
          Length = 103613

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 494    ttcatcttatattcttcatca 514
              |||||||||||||||||||||
Sbjct: 102653 ttcatcttatattcttcatca 102673

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>gb|AC117708.10| Mus musculus chromosome 7, clone RP23-474J16, complete sequence
          Length = 188333

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 376    agagaggacaccaggagaggg 396
              |||||||||||||||||||||
Sbjct: 128965 agagaggacaccaggagaggg 128985

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 322     atctatgtcatccagcttattgatg 346
               |||| ||||||||||||||||||||
Sbjct: 6122034 atctctgtcatccagcttattgatg 6122058

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>emb|Z78854.1|HSPA18C12 H.sapiens flow-sorted chromosome 6 HindIII fragment, SC6pA18C12
          Length = 542

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 494 ttcatcttatattcttcatca 514
           |||||||||||||||||||||
Sbjct: 225 ttcatcttatattcttcatca 245

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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 625    agtccttcgagcttttccag 644
              ||||||||||||||||||||
Sbjct: 189819 agtccttcgagcttttccag 189800

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>gb|AC103597.21| Mus musculus chromosome 18, clone RP23-435G4, complete sequence
          Length = 221083

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    ccactcactgctgaatgtctttat 249
              ||||||||||||| ||||||||||
Sbjct: 110189 ccactcactgctgcatgtctttat 110166

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>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence
          Length = 245260

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 429    cagaaaataataagcaaggcctctcttt 456
              |||||||||| ||| |||||||||||||
Sbjct: 195239 cagaaaataacaagtaaggcctctcttt 195266

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>gb|AC140249.2| Mus musculus BAC clone RP24-285O1 from chromosome 12, complete sequence
          Length = 160337

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 429    cagaaaataataagcaaggcctctcttt 456
              |||||||||| ||| |||||||||||||
Sbjct: 139897 cagaaaataacaagtaaggcctctcttt 139870

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>gb|AY524776.1| Danio rerio Pard3 180 kDa isoform mRNA, complete cds, alternatively
           spliced
          Length = 4698

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ttattgatgatcttgccaccagag 361
           ||||||||||||||| ||||||||
Sbjct: 170 ttattgatgatcttgacaccagag 193

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>gb|AY524777.1| Danio rerio Pard3 150 kDa isoform mRNA, complete cds, alternatively
           spliced
          Length = 4219

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ttattgatgatcttgccaccagag 361
           ||||||||||||||| ||||||||
Sbjct: 170 ttattgatgatcttgacaccagag 193

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>emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 in linkage group 2,
             complete sequence
          Length = 150021

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   ttattgatgatcttgccaccagag 361
             ||||||||||||||| ||||||||
Sbjct: 43166 ttattgatgatcttgacaccagag 43189

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>ref|XM_569356.1| Cryptococcus neoformans var. neoformans JEC21
            long-chain-fatty-acid-CoA ligase (CNC00660) partial mRNA
          Length = 2343

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 625  agtccttcgagcttttccag 644
            ||||||||||||||||||||
Sbjct: 1787 agtccttcgagcttttccag 1768

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>emb|AL359894.9| Human DNA sequence from clone RP11-379C1 on chromosome 1 Contains the 5'
              end of gene KIAA1365 and a CpG island, complete sequence
          Length = 161040

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 552    gtttaaagctctgttttagccaat 575
              ||||||||| ||||||||||||||
Sbjct: 133148 gtttaaagccctgttttagccaat 133171

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>emb|AL009051.1|HS747L4 Human DNA sequence from clone RP4-747L4 on chromosome 1q23-24 Contains
             a novel gene (LOC375035), the TBX19 gene for T-box 19 and
             a CpG island, complete sequence
          Length = 106319

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 574   atttggagaaactatccaag 593
             ||||||||||||||||||||
Sbjct: 32566 atttggagaaactatccaag 32585

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>emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in linkage group 14 Contains
              part of a novel gene similar to ATP8B1 (ATPase, Class I,
              type 8B, member 1), part of a novel gene similar to MCF2
              (MCF.2 cell line derived transforming sequence) and two CpG
              islands, complete sequence
          Length = 174521

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 487    cttgtacttcatcttatatt 506
              ||||||||||||||||||||
Sbjct: 135133 cttgtacttcatcttatatt 135152

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>emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in linkage group 21,
             complete sequence
          Length = 217310

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ctataaattaacttggagca 157
             ||||||||||||||||||||
Sbjct: 61457 ctataaattaacttggagca 61476

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>emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in linkage group 21,
              complete sequence
          Length = 216476

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ctataaattaacttggagca 157
              ||||||||||||||||||||
Sbjct: 125041 ctataaattaacttggagca 125022

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>emb|AL805940.7| Mouse DNA sequence from clone RP24-286B19 on chromosome 4, complete
             sequence
          Length = 128829

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ccattgcaagctccatgcct 286
             ||||||||||||||||||||
Sbjct: 19853 ccattgcaagctccatgcct 19834

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>gb|AC089982.15| Homo sapiens 12 BAC RP11-25I15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173877

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   atttcagacttgtacttcat 498
             ||||||||||||||||||||
Sbjct: 87030 atttcagacttgtacttcat 87049

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>dbj|AK143456.1| Mus musculus 14 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:E630011B09 product:unclassifiable, full
            insert sequence
          Length = 3063

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 426  agccagaaaataataagcaa 445
            ||||||||||||||||||||
Sbjct: 2610 agccagaaaataataagcaa 2591

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>gb|AY660003.1| Crassostrea gigas cytoplasmic aspartate aminotransferase gene,
            complete cds
          Length = 5051

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    ataatttctacatgcagtccatga 29
            ||||||||||||||||||| ||||
Sbjct: 3078 ataatttctacatgcagtcaatga 3055

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>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete
             sequence
          Length = 124955

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 199   ctcttgcctcatgacacaggtcatgagccactcact 234
             |||||| |||||||||||| |||| | |||||||||
Sbjct: 77840 ctcttgtctcatgacacagttcataaaccactcact 77805

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>gb|AC154792.2| Mus musculus BAC clone RP23-85E10 from chromosome 13, complete sequence
          Length = 201302

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   agccagaaaataataagcaa 445
             ||||||||||||||||||||
Sbjct: 58102 agccagaaaataataagcaa 58121

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      ctccatgccttcttcacaag 296
                ||||||||||||||||||||
Sbjct: 18474267 ctccatgccttcttcacaag 18474286

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 479      atttcagacttgtacttcat 498
                ||||||||||||||||||||
Sbjct: 31828503 atttcagacttgtacttcat 31828484

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>gb|AC073913.23| Homo sapiens 12 BAC RP11-955H22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168165

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 417   agaaagtgtagccagaaaataataagca 444
             ||||||||||| |||||| |||||||||
Sbjct: 27499 agaaagtgtaggcagaaattaataagca 27526

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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   atttcagacttgtacttcat 498
             ||||||||||||||||||||
Sbjct: 14581 atttcagacttgtacttcat 14562

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>dbj|AB092341.1| Gallus gallus germline DNA, T cell receptor beta chain D-J-C region
          Length = 18280

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   ttttagccaatttggagaaa 584
             ||||||||||||||||||||
Sbjct: 16206 ttttagccaatttggagaaa 16187

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>gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, complete sequence
          Length = 184406

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 565    ttttagccaatttggagaaa 584
              ||||||||||||||||||||
Sbjct: 151710 ttttagccaatttggagaaa 151691

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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  ctccatgccttcttcacaag 296
            ||||||||||||||||||||
Sbjct: 3023 ctccatgccttcttcacaag 3042

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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ctccatgccttcttcacaag 296
             ||||||||||||||||||||
Sbjct: 66115 ctccatgccttcttcacaag 66134

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>dbj|BS000040.1| Pan troglodytes chromosome 22 clone:PTB-075B06, map 22, complete
             sequences
          Length = 172697

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 280   catgccttcttcacaagccaagaagatt 307
             |||| |||||||||| ||||||||||||
Sbjct: 83152 catggcttcttcacatgccaagaagatt 83125

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>dbj|AB006153.1| Oncorhynchus mykiss mRNA for tFZR1, complete cds
          Length = 1613

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 509  tcatcatccagaacatgttc 528
            ||||||||||||||||||||
Sbjct: 1340 tcatcatccagaacatgttc 1359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,654,779
Number of Sequences: 3902068
Number of extensions: 6654779
Number of successful extensions: 123156
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122963
Number of HSP's gapped (non-prelim): 193
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result