| Clone Name | rbags22f16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full insert sequence Length = 2096 Score = 230 bits (116), Expect = 5e-57 Identities = 215/248 (86%) Strand = Plus / Minus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| |||||||||||||| |||||| || ||||||||| ||| Sbjct: 1762 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1703 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 |||| ||||||||| ||| |||||||||||| ||||||||||||| | |||||||| Sbjct: 1702 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1643 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 1642 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1583 Query: 418 cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 477 |||||||| ||||||| || || |||||||||||||||||||| || |||||||||| | Sbjct: 1582 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1523 Query: 478 cgtcgtcg 485 |||||||| Sbjct: 1522 cgtcgtcg 1515 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 651 gctgcatcacccatgtaatctctcagcttctgatccagcttgctaag 697 |||||||| |||||||||||||| || ||||||| || |||||||| Sbjct: 1319 gctgcatcgcccatgtaatctctgaggctctgatcaagtttgctaag 1273 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 522 gctccgttctcgtggatcatgaccacagggttcttgta 559 ||||| ||||| ||||||||||| | |||||||||||| Sbjct: 1478 gctccattctcatggatcatgacaatagggttcttgta 1441
>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full insert sequence Length = 2059 Score = 230 bits (116), Expect = 5e-57 Identities = 215/248 (86%) Strand = Plus / Minus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| |||||||||||||| |||||| || ||||||||| ||| Sbjct: 1719 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1660 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 |||| ||||||||| ||| |||||||||||| ||||||||||||| | |||||||| Sbjct: 1659 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1600 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 1599 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1540 Query: 418 cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 477 |||||||| ||||||| || || |||||||||||||||||||| || |||||||||| | Sbjct: 1539 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1480 Query: 478 cgtcgtcg 485 |||||||| Sbjct: 1479 cgtcgtcg 1472 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 651 gctgcatcacccatgtaatctctcagcttctgatccagcttgctaag 697 |||||||| |||||||||||||| || ||||||| || |||||||| Sbjct: 1276 gctgcatcgcccatgtaatctctgaggctctgatcaagtttgctaag 1230 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 522 gctccgttctcgtggatcatgaccacagggttcttgta 559 ||||| ||||| ||||||||||| | |||||||||||| Sbjct: 1435 gctccattctcatggatcatgacaatagggttcttgta 1398
>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full insert sequence Length = 1993 Score = 230 bits (116), Expect = 5e-57 Identities = 215/248 (86%) Strand = Plus / Minus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| |||||||||||||| |||||| || ||||||||| ||| Sbjct: 1653 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1594 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 |||| ||||||||| ||| |||||||||||| ||||||||||||| | |||||||| Sbjct: 1593 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1534 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 1533 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1474 Query: 418 cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 477 |||||||| ||||||| || || |||||||||||||||||||| || |||||||||| | Sbjct: 1473 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1414 Query: 478 cgtcgtcg 485 |||||||| Sbjct: 1413 cgtcgtcg 1406 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 522 gctccgttctcgtggatcatgaccacagggttcttgta 559 ||||| ||||| ||||||||||| | |||||||||||| Sbjct: 1369 gctccattctcatggatcatgacaatagggttcttgta 1332
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| |||||||||||||| |||||| || ||||||||| ||| Sbjct: 71059 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 71118 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 |||| ||||||||| ||| |||||||||||| ||||||||||||| | |||||||| Sbjct: 71119 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 71178 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 71179 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 71238 Query: 418 cgttcctgc 426 ||||||||| Sbjct: 71239 cgttcctgc 71247 Score = 81.8 bits (41), Expect = 3e-12 Identities = 152/189 (80%) Strand = Plus / Plus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| ||||||||||||| ||||| || |||| | | ||| Sbjct: 97155 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 97214 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 ||||||||||| || ||| | ||||||||||||| | ||||| || | || |||||||| Sbjct: 97215 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 97274 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | ||||||| ||||||||||| | | |||||||||||||| ||| || |||||| | Sbjct: 97275 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 97334 Query: 418 cgttcctgc 426 ||||||||| Sbjct: 97335 cgttcctgc 97343 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 422 cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 481 |||| ||||||| || || |||||||||||||||||||| || |||||||||| ||||| Sbjct: 71497 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 71556 Query: 482 gtcg 485 |||| Sbjct: 71557 gtcg 71560 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 651 gctgcatcacccatgtaatctctcagcttctgatccagcttgctaag 697 |||||||| |||||||||||||| || ||||||| || |||||||| Sbjct: 72267 gctgcatcgcccatgtaatctctgaggctctgatcaagtttgctaag 72313 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 386 tgaccacacgaagtagccctgcacgttcgacccgttcctgc 426 ||||||||||||||| ||| || |||||| |||||||||| Sbjct: 89265 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 89305 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 528 ttctcgtggatcatgaccacagggttcttgta 559 ||||| ||||||||||| | |||||||||||| Sbjct: 71886 ttctcatggatcatgacaatagggttcttgta 71917
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| |||||||||||||| |||||| || ||||||||| ||| Sbjct: 19587984 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 19588043 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 |||| ||||||||| ||| |||||||||||| ||||||||||||| | |||||||| Sbjct: 19588044 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 19588103 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 19588104 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 19588163 Query: 418 cgttcctgc 426 ||||||||| Sbjct: 19588164 cgttcctgc 19588172 Score = 81.8 bits (41), Expect = 3e-12 Identities = 152/189 (80%) Strand = Plus / Plus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| ||||||||||||| ||||| || |||| | | ||| Sbjct: 19614080 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 19614139 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 ||||||||||| || ||| | ||||||||||||| | ||||| || | || |||||||| Sbjct: 19614140 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 19614199 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | ||||||| ||||||||||| | | |||||||||||||| ||| || |||||| | Sbjct: 19614200 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 19614259 Query: 418 cgttcctgc 426 ||||||||| Sbjct: 19614260 cgttcctgc 19614268 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 422 cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 481 |||| ||||||| || || |||||||||||||||||||| || |||||||||| ||||| Sbjct: 19588422 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 19588481 Query: 482 gtcg 485 |||| Sbjct: 19588482 gtcg 19588485 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 651 gctgcatcacccatgtaatctctcagcttctgatccagcttgctaag 697 |||||||| |||||||||||||| || ||||||| || |||||||| Sbjct: 19589192 gctgcatcgcccatgtaatctctgaggctctgatcaagtttgctaag 19589238 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 386 tgaccacacgaagtagccctgcacgttcgacccgttcctgc 426 ||||||||||||||| ||| || |||||| |||||||||| Sbjct: 19606190 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 19606230 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 528 ttctcgtggatcatgaccacagggttcttgta 559 ||||| ||||||||||| | |||||||||||| Sbjct: 19588811 ttctcatggatcatgacaatagggttcttgta 19588842
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1399_D07, complete sequence Length = 65000 Score = 81.8 bits (41), Expect = 3e-12 Identities = 152/189 (80%) Strand = Plus / Plus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| ||||||||||||| ||||| || |||| | | ||| Sbjct: 23562 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 23621 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 ||||||||||| || ||| | ||||||||||||| | ||||| || | || |||||||| Sbjct: 23622 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 23681 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | ||||||| ||||||||||| | | |||||||||||||| ||| || |||||| | Sbjct: 23682 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 23741 Query: 418 cgttcctgc 426 ||||||||| Sbjct: 23742 cgttcctgc 23750 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 386 tgaccacacgaagtagccctgcacgttcgacccgttcctgc 426 ||||||||||||||| ||| || |||||| |||||||||| Sbjct: 15672 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 15712
>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full insert sequence Length = 1919 Score = 75.8 bits (38), Expect = 2e-10 Identities = 149/186 (80%) Strand = Plus / Minus Query: 238 ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 297 |||||| |||||||||||| ||||||||||||| ||||| || |||| | | ||| Sbjct: 1504 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 1445 Query: 298 acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 357 ||||||||||| || ||| | ||||||||||||| | ||||| || | || |||||||| Sbjct: 1444 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 1385 Query: 358 caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 417 | ||||||| ||||||||||| | | |||||||||||||| ||| || |||||| | Sbjct: 1384 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 1325 Query: 418 cgttcc 423 |||||| Sbjct: 1324 cgttcc 1319
>ref|NM_190018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1359 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 1178 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1135
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 40840163 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 40840120 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 37943132 cgccgccacggaggaagccg 37943151
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 142809 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 142766
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 52269 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 52226
>dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H04, full insert sequence Length = 1750 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 1363 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1320
>dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full insert sequence Length = 1906 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 369 tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 412 ||||||| ||||||||||||||||||||||||||| | |||||| Sbjct: 1362 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1319
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 53 aacaatcgactccaaagaagcaga 76 |||||||||||||||||||||||| Sbjct: 1522793 aacaatcgactccaaagaagcaga 1522770
>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence Length = 169543 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 53 aacaatcgactccaaagaagcaga 76 |||||||||||||||||||||||| Sbjct: 73421 aacaatcgactccaaagaagcaga 73398
>ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glycoprotein (Tb09.354.0090) partial mRNA Length = 1500 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 53 aacaatcgactccaaagaagcaga 76 |||||||||||||||||||||||| Sbjct: 1140 aacaatcgactccaaagaagcaga 1163
>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence Length = 192643 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 662 catgtaatctctcagcttctgatccag 688 ||||||||||||||||||||| ||||| Sbjct: 43138 catgtaatctctcagcttctgttccag 43112
>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence Length = 219617 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 662 catgtaatctctcagcttctgatccag 688 ||||||||||||||||||||| ||||| Sbjct: 1713 catgtaatctctcagcttctgttccag 1687
>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region, partial sequence Length = 276 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 116 ccaaaaacaagaaccaatcatc 137 |||||||||||||||||||||| Sbjct: 108 ccaaaaacaagaaccaatcatc 87
>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial sequence Length = 276 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 116 ccaaaaacaagaaccaatcatc 137 |||||||||||||||||||||| Sbjct: 107 ccaaaaacaagaaccaatcatc 86
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 1384 tgtccacgattgaccacgcgaagtagccc 1356
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 19720 tgtccacgattgaccacgcgaagtagccc 19692
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 126191 tgtccacgattgaccacgcgaagtagccc 126163
>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes and two CpG islands, complete sequence Length = 187709 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 607 actggttctttaagtcaaaaa 627 ||||||||||||||||||||| Sbjct: 182137 actggttctttaagtcaaaaa 182157
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 25639993 tgtccacgattgaccacgcgaagtagccc 25639965
>gb|AC154136.13| Mus musculus BAC RP23-184A3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 220233 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 670 ctctcagcttctgatccagct 690 ||||||||||||||||||||| Sbjct: 179658 ctctcagcttctgatccagct 179638
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full insert sequence Length = 1827 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 1333 tgtccacgattgaccacgcgaagtagccc 1305
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full insert sequence Length = 2770 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 tgtccacgaatgaccacacgaagtagccc 404 ||||||||| ||||||| ||||||||||| Sbjct: 2672 tgtccacgattgaccacgcgaagtagccc 2644
>gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosome 7, complete sequence Length = 199480 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aaattgaactcccatccaaa 120 |||||||||||||||||||| Sbjct: 145463 aaattgaactcccatccaaa 145482
>ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1842 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 744 cgccgccacggaggaagccg 763
>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence Length = 170539 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaagaagcagatgtataaat 85 |||||||||||||||||||| Sbjct: 170337 aaagaagcagatgtataaat 170356
>gb|AC165118.3| Oryctolagus cuniculus, clone Oryctolagus cuniculus-16788057J9, complete sequence Length = 40531 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 672 ctcagcttctgatccagctt 691 |||||||||||||||||||| Sbjct: 16529 ctcagcttctgatccagctt 16510
>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence Length = 188060 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaagaagcagatgtataaat 85 |||||||||||||||||||| Sbjct: 88002 aaagaagcagatgtataaat 88021
>gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 contig A, partial sequence Length = 55981 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gaggaattcgaacatgtcca 381 |||||||||||||||||||| Sbjct: 34304 gaggaattcgaacatgtcca 34323
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence Length = 87839 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 558 tatttgacctggagatgctccagc 581 |||||| ||||||||||||||||| Sbjct: 75334 tatttggcctggagatgctccagc 75311
>gb|AC122844.4| Mus musculus BAC clone RP23-152A2 from 7, complete sequence Length = 194266 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 663 atgtaatctctcagcttctg 682 |||||||||||||||||||| Sbjct: 98627 atgtaatctctcagcttctg 98608
>gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete sequence Length = 191541 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 672 ctcagcttctgatccagctt 691 |||||||||||||||||||| Sbjct: 170194 ctcagcttctgatccagctt 170175
>gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA (cDNA clone IMAGE:5300744), containing frame-shift errors Length = 1826 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 255 gagggatcagccacgctggc 274
>gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA (cDNA clone IMAGE:5199737), with apparent retained intron Length = 2055 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 292 gagggatcagccacgctggc 311
>emb|AL935260.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11 Length = 298050 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 atattaatattttagcacat 21 |||||||||||||||||||| Sbjct: 106990 atattaatattttagcacat 107009
>ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (spinesin) (TMPRSS5), mRNA Length = 2265 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 530 gagggatcagccacgctggc 549
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gccgaagcccatgcggtagc 357 |||||||||||||||||||| Sbjct: 449378 gccgaagcccatgcggtagc 449359
>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence Length = 122770 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaaaacaagaaccaatcatc 137 |||||||||||||||||||| Sbjct: 101675 aaaaacaagaaccaatcatc 101656
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 gtcgacgccatagaggccgaagcc 346 ||||||||||| |||||||||||| Sbjct: 43446 gtcgacgccatggaggccgaagcc 43423
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 24076 cgccgccacggaggaagccg 24095
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atgaacatttataatgtata 49 |||||||||||||||||||| Sbjct: 335729 atgaacatttataatgtata 335710
>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full insert sequence Length = 2439 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 1008 cgccgccacggaggaagccg 1027
>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence Length = 218892 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gaacatgtccacgaatgacc 390 |||||||||||||||||||| Sbjct: 45149 gaacatgtccacgaatgacc 45130
>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full insert sequence Length = 2388 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 957 cgccgccacggaggaagccg 976
>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete sequence Length = 173509 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 101959 gagggatcagccacgctggc 101940
>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete sequence Length = 187946 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 179554 gagggatcagccacgctggc 179535
>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence Length = 217178 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aaattgaactcccatccaaa 120 |||||||||||||||||||| Sbjct: 80566 aaattgaactcccatccaaa 80585
>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence Length = 1117 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tcccatccaaaaacaagaaccaat 133 ||||||||||||||| |||||||| Sbjct: 887 tcccatccaaaaacacgaaccaat 864
>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence Length = 1117 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tcccatccaaaaacaagaaccaat 133 ||||||||||||||| |||||||| Sbjct: 887 tcccatccaaaaacacgaaccaat 864
>dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds Length = 2265 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagggatcagccacgctggc 520 |||||||||||||||||||| Sbjct: 530 gagggatcagccacgctggc 549
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccgccacggaggaagccg 269 |||||||||||||||||||| Sbjct: 39408 cgccgccacggaggaagccg 39427 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,655,567 Number of Sequences: 3902068 Number of extensions: 5655567 Number of successful extensions: 110036 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109723 Number of HSP's gapped (non-prelim): 304 length of query: 698 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 675 effective length of database: 17,143,297,704 effective search space: 11571725950200 effective search space used: 11571725950200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)