ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22f14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120533.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
2dbj|AK072060.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
3gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 98 4e-17
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 4e-17
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6gb|AC125480.33| Medicago truncatula clone mth2-8c24, complete se... 48 0.036
7dbj|AP004954.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.036
8ref|XM_420499.1| PREDICTED: Gallus gallus similar to FLJ13273 pr... 44 0.56
9ref|NM_203394.1| Homo sapiens E2F transcription factor 7 (E2F7),... 42 2.2
10gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome... 42 2.2
11gb|BC016658.1| Homo sapiens E2F transcription factor 7, mRNA (cD... 42 2.2
12gb|AC025161.18| Homo sapiens 12 BAC RP11-669B18 (Roswell Park Ca... 42 2.2
13dbj|AK096316.1| Homo sapiens cDNA FLJ38997 fis, clone NT2RI2020703 42 2.2
14gb|AC097507.2| Homo sapiens BAC clone RP11-371E22 from 4, comple... 42 2.2
15gb|AC106879.4| Homo sapiens BAC clone RP11-674B11 from 4, comple... 42 2.2
16gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome... 42 2.2
17gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 8.8
18gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
19gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, com... 40 8.8
20gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complet... 40 8.8
21emb|CR954250.6| Zebrafish DNA sequence from clone DKEY-34G4 in l... 40 8.8
22emb|BX640506.12| Zebrafish DNA sequence from clone DKEY-271E14 i... 40 8.8
23gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, co... 40 8.8
24ref|XM_646095.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 8.8
25gb|AC110029.8| Mus musculus chromosome 1, clone RP23-46D11, comp... 40 8.8
26ref|XM_721931.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.8
27ref|XM_672737.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.8
28emb|AL583839.12| Human DNA sequence from clone RP11-165J3 on chr... 40 8.8
29emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D... 40 8.8
30emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 40 8.8
31emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.8
32gb|AC157733.2| Xenopus tropicalis clone ISB1-355J23, complete se... 40 8.8
33gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.8
34gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.8
35gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-13... 40 8.8
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
37gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, co... 40 8.8
38gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complet... 40 8.8
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8 
>dbj|AK120533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128I06, full
            insert sequence
          Length = 1405

 Score =  307 bits (155), Expect = 2e-80
 Identities = 335/395 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gtcttctccttggctgctctgaatagtttgatgacattttcatacaccacaaacgtcaca 304
            ||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |  
Sbjct: 1000 gtcttctcctttgctgctttgaataatttgatcacattttcatacaccacaaatgtaagg 941

                                                                        
Query: 305  gaagccgctggaaggttcttcaacaggttggacgtgatgcctcggtaaaacccacggaca 364
            ||||| || |||||||| || | ||| || || |||||||| | |||||| |||||||||
Sbjct: 940  gaagctgccggaaggtttttgagcagattcgatgtgatgcccctgtaaaatccacggaca 881

                                                                        
Query: 365  ccttcgtaccttgcagtttccttcactacatgccaactgtctgagtactttgggatacca 424
            ||||| | |||||||||||| |||||||||||||| || |||  |||||||||  | |||
Sbjct: 880  ccttcatgccttgcagtttctttcactacatgccagctatctttgtactttggagtgcca 821

                                                                        
Query: 425  tcactaccaggccgttgctgtaggcgggctcggataacctgataaggataagtaagaaga 484
            ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||| |||
Sbjct: 820  tcactaccaggtcgttgctgcaagcgtgctcggatgacctggtaaggataagtaagcaga 761

                                                                        
Query: 485  atggcagataattttgaaccagcgccaagtgccgcataatcaacagaattcaataaatcc 544
            ||||||| || ||| |||||||| |||||||||||||||||||  ||||||||  |||| 
Sbjct: 760  atggcagttactttcgaaccagccccaagtgccgcataatcaatggaattcaaggaatca 701

                                                                        
Query: 545  tcgctgcctttgtcatctccccttgtttgtttacttctggcaaatatcatagccttgcga 604
            |||| || | |||  |||   ||||| ||| ||||| |||||||||||| ||| ||||||
Sbjct: 700  tcgcagcttctgttgtctgttcttgtctgtctacttttggcaaatatcaaagctttgcga 641

                                               
Query: 605  agttcctcataggccgtgaattgtatcgcgccatg 639
            |||||||||||||||||||| |||||||| |||||
Sbjct: 640  agttcctcataggccgtgaactgtatcgctccatg 606
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>dbj|AK072060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110F19, full
            insert sequence
          Length = 1414

 Score =  307 bits (155), Expect = 2e-80
 Identities = 335/395 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gtcttctccttggctgctctgaatagtttgatgacattttcatacaccacaaacgtcaca 304
            ||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |  
Sbjct: 1016 gtcttctcctttgctgctttgaataatttgatcacattttcatacaccacaaatgtaagg 957

                                                                        
Query: 305  gaagccgctggaaggttcttcaacaggttggacgtgatgcctcggtaaaacccacggaca 364
            ||||| || |||||||| || | ||| || || |||||||| | |||||| |||||||||
Sbjct: 956  gaagctgccggaaggtttttgagcagattcgatgtgatgcccctgtaaaatccacggaca 897

                                                                        
Query: 365  ccttcgtaccttgcagtttccttcactacatgccaactgtctgagtactttgggatacca 424
            ||||| | |||||||||||| |||||||||||||| || |||  |||||||||  | |||
Sbjct: 896  ccttcatgccttgcagtttctttcactacatgccagctatctttgtactttggagtgcca 837

                                                                        
Query: 425  tcactaccaggccgttgctgtaggcgggctcggataacctgataaggataagtaagaaga 484
            ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||| |||
Sbjct: 836  tcactaccaggtcgttgctgcaagcgtgctcggatgacctggtaaggataagtaagcaga 777

                                                                        
Query: 485  atggcagataattttgaaccagcgccaagtgccgcataatcaacagaattcaataaatcc 544
            ||||||| || ||| |||||||| |||||||||||||||||||  ||||||||  |||| 
Sbjct: 776  atggcagttactttcgaaccagccccaagtgccgcataatcaatggaattcaaggaatca 717

                                                                        
Query: 545  tcgctgcctttgtcatctccccttgtttgtttacttctggcaaatatcatagccttgcga 604
            |||| || | |||  |||   ||||| ||| ||||| |||||||||||| ||| ||||||
Sbjct: 716  tcgcagcttctgttgtctgttcttgtctgtctacttttggcaaatatcaaagctttgcga 657

                                               
Query: 605  agttcctcataggccgtgaattgtatcgcgccatg 639
            |||||||||||||||||||| |||||||| |||||
Sbjct: 656  agttcctcataggccgtgaactgtatcgctccatg 622
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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                         
Query: 245   gtcttctccttggctgctctgaatagtttgatgacattttcatacaccacaaacgtcaca 304
             ||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |  
Sbjct: 55904 gtcttctcctttgctgctttgaataatttgatcacattttcatacaccacaaatgtaagg 55845

                                                                         
Query: 305   gaagccgctggaaggttcttcaacaggttggacgtgatgcctcggtaaaacccacggaca 364
             ||||| || |||||||| || | ||| || || |||||||| | |||||| |||||||||
Sbjct: 55844 gaagctgccggaaggtttttgagcagattcgatgtgatgcccctgtaaaatccacggaca 55785

                  
Query: 365   ccttc 369
             |||||
Sbjct: 55784 ccttc 55780



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 566   cttgtttgtttacttctggcaaatatcatagccttgcgaagttcctcataggccgtgaat 625
             ||||| ||| ||||| |||||||||||| ||| |||||||||||||||||||||||||| 
Sbjct: 54590 cttgtctgtctacttttggcaaatatcaaagctttgcgaagttcctcataggccgtgaac 54531

                           
Query: 626   tgtatcgcgccatg 639
             |||||||| |||||
Sbjct: 54530 tgtatcgctccatg 54517



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                         
Query: 462   cctgataaggataagtaagaagaatggcagataattttgaaccagcgccaagtgccgcat 521
             |||| |||||||||||||| |||||||||| || ||| |||||||| |||||||||||||
Sbjct: 55139 cctggtaaggataagtaagcagaatggcagttactttcgaaccagccccaagtgccgcat 55080

                   
Query: 522   aatcaa 527
             ||||||
Sbjct: 55079 aatcaa 55074



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                         
Query: 372   accttgcagtttccttcactacatgccaactgtctgagtactttgggataccatcactac 431
             ||||||||||||| |||||||||||||| || |||  |||||||||  | ||||||||||
Sbjct: 55400 accttgcagtttctttcactacatgccagctatctttgtactttggagtgccatcactac 55341

                          
Query: 432   caggccgttgctg 444
             |||| ||||||||
Sbjct: 55340 caggtcgttgctg 55328
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                            
Query: 245      gtcttctccttggctgctctgaatagtttgatgacattttcatacaccacaaacgtcaca 304
                ||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |  
Sbjct: 29793557 gtcttctcctttgctgctttgaataatttgatcacattttcatacaccacaaatgtaagg 29793616

                                                                            
Query: 305      gaagccgctggaaggttcttcaacaggttggacgtgatgcctcggtaaaacccacggaca 364
                ||||| || |||||||| || | ||| || || |||||||| | |||||| |||||||||
Sbjct: 29793617 gaagctgccggaaggtttttgagcagattcgatgtgatgcccctgtaaaatccacggaca 29793676

                     
Query: 365      ccttc 369
                |||||
Sbjct: 29793677 ccttc 29793681



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 566      cttgtttgtttacttctggcaaatatcatagccttgcgaagttcctcataggccgtgaat 625
                ||||| ||| ||||| |||||||||||| ||| |||||||||||||||||||||||||| 
Sbjct: 29794871 cttgtctgtctacttttggcaaatatcaaagctttgcgaagttcctcataggccgtgaac 29794930

                              
Query: 626      tgtatcgcgccatg 639
                |||||||| |||||
Sbjct: 29794931 tgtatcgctccatg 29794944



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                            
Query: 462      cctgataaggataagtaagaagaatggcagataattttgaaccagcgccaagtgccgcat 521
                |||| |||||||||||||| |||||||||| || ||| |||||||| |||||||||||||
Sbjct: 29794322 cctggtaaggataagtaagcagaatggcagttactttcgaaccagccccaagtgccgcat 29794381

                      
Query: 522      aatcaa 527
                ||||||
Sbjct: 29794382 aatcaa 29794387



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 372      accttgcagtttccttcactacatgccaactgtctgagtactttgggataccatcactac 431
                ||||||||||||| |||||||||||||| || |||  |||||||||  | ||||||||||
Sbjct: 29794061 accttgcagtttctttcactacatgccagctatctttgtactttggagtgccatcactac 29794120

                             
Query: 432      caggccgttgctg 444
                |||| ||||||||
Sbjct: 29794121 caggtcgttgctg 29794133
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                            
Query: 245      gtcttctccttggctgctctgaatagtttgatgacattttcatacaccacaaacgtcaca 304
                ||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |  
Sbjct: 29884979 gtcttctcctttgctgctttgaataatttgatcacattttcatacaccacaaatgtaagg 29885038

                                                                            
Query: 305      gaagccgctggaaggttcttcaacaggttggacgtgatgcctcggtaaaacccacggaca 364
                ||||| || |||||||| || | ||| || || |||||||| | |||||| |||||||||
Sbjct: 29885039 gaagctgccggaaggtttttgagcagattcgatgtgatgcccctgtaaaatccacggaca 29885098

                     
Query: 365      ccttc 369
                |||||
Sbjct: 29885099 ccttc 29885103



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 566      cttgtttgtttacttctggcaaatatcatagccttgcgaagttcctcataggccgtgaat 625
                ||||| ||| ||||| |||||||||||| ||| |||||||||||||||||||||||||| 
Sbjct: 29886293 cttgtctgtctacttttggcaaatatcaaagctttgcgaagttcctcataggccgtgaac 29886352

                              
Query: 626      tgtatcgcgccatg 639
                |||||||| |||||
Sbjct: 29886353 tgtatcgctccatg 29886366



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                            
Query: 462      cctgataaggataagtaagaagaatggcagataattttgaaccagcgccaagtgccgcat 521
                |||| |||||||||||||| |||||||||| || ||| |||||||| |||||||||||||
Sbjct: 29885744 cctggtaaggataagtaagcagaatggcagttactttcgaaccagccccaagtgccgcat 29885803

                      
Query: 522      aatcaa 527
                ||||||
Sbjct: 29885804 aatcaa 29885809



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 372      accttgcagtttccttcactacatgccaactgtctgagtactttgggataccatcactac 431
                ||||||||||||| |||||||||||||| || |||  |||||||||  | ||||||||||
Sbjct: 29885483 accttgcagtttctttcactacatgccagctatctttgtactttggagtgccatcactac 29885542

                             
Query: 432      caggccgttgctg 444
                |||| ||||||||
Sbjct: 29885543 caggtcgttgctg 29885555
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>gb|AC125480.33| Medicago truncatula clone mth2-8c24, complete sequence
          Length = 119718

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 370   gtaccttgcagtttccttcactacatgccaactgtc 405
             ||||| ||||||||| ||||| ||||||||||||||
Sbjct: 13507 gtaccgtgcagtttctttcacaacatgccaactgtc 13542
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>dbj|AP004954.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21G09, TM0131,
             complete sequence
          Length = 93645

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 370   gtaccttgcagtttccttcactacatgccaactgtc 405
             ||||| ||||||||| ||||| ||||||||||||||
Sbjct: 79667 gtaccgtgcagtttctttcacaacatgccaactgtc 79632
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>ref|XM_420499.1| PREDICTED: Gallus gallus similar to FLJ13273 protein (LOC422536),
            mRNA
          Length = 2288

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 550  gcctttgtcatctccccttgtt 571
            ||||||||||||||||||||||
Sbjct: 1624 gcctttgtcatctccccttgtt 1645
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>ref|NM_203394.1| Homo sapiens E2F transcription factor 7 (E2F7), mRNA
          Length = 5728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  cagtttccttcactacatgcc 398
            |||||||||||||||||||||
Sbjct: 3785 cagtttccttcactacatgcc 3805
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>gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome 16, complete sequence
          Length = 190860

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   ttgtttacttctggcaaatat 591
             |||||||||||||||||||||
Sbjct: 65135 ttgtttacttctggcaaatat 65155
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>gb|BC016658.1| Homo sapiens E2F transcription factor 7, mRNA (cDNA clone
            IMAGE:3923850), partial cds
          Length = 3313

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  cagtttccttcactacatgcc 398
            |||||||||||||||||||||
Sbjct: 1358 cagtttccttcactacatgcc 1378
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>gb|AC025161.18| Homo sapiens 12 BAC RP11-669B18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 83265

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   cagtttccttcactacatgcc 398
             |||||||||||||||||||||
Sbjct: 43581 cagtttccttcactacatgcc 43561
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>dbj|AK096316.1| Homo sapiens cDNA FLJ38997 fis, clone NT2RI2020703
          Length = 3949

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  cagtttccttcactacatgcc 398
            |||||||||||||||||||||
Sbjct: 2008 cagtttccttcactacatgcc 2028
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>gb|AC097507.2| Homo sapiens BAC clone RP11-371E22 from 4, complete sequence
          Length = 167032

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    tgttaaatgaataagagctga 107
             |||||||||||||||||||||
Sbjct: 83043 tgttaaatgaataagagctga 83023
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>gb|AC106879.4| Homo sapiens BAC clone RP11-674B11 from 4, complete sequence
          Length = 121163

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 55    gaaaacaagttcgccaaactaaatt 79
             |||||||| ||||||||||||||||
Sbjct: 23987 gaaaacaaattcgccaaactaaatt 23963
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>gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome 14, complete sequence
          Length = 192057

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 27     aagaaacagaaaatgaattttctct 51
              ||||||||||||||| |||||||||
Sbjct: 143630 aagaaacagaaaatgtattttctct 143606
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    gtttccttcactacatgcca 399
              ||||||||||||||||||||
Sbjct: 684483 gtttccttcactacatgcca 684464
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>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC
             nbxb0045B21, complete sequence
          Length = 152397

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   agtatctttcctatttcctc 206
             ||||||||||||||||||||
Sbjct: 76896 agtatctttcctatttcctc 76877
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>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence
          Length = 208067

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   cataatcaacagaattcaataaat 542
             ||||||| ||||||||||||||||
Sbjct: 62309 cataatccacagaattcaataaat 62332
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>gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complete sequence
          Length = 68890

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   cataatcaacagaattcaataaat 542
             ||||||| ||||||||||||||||
Sbjct: 34901 cataatccacagaattcaataaat 34924
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>emb|CR954250.6| Zebrafish DNA sequence from clone DKEY-34G4 in linkage group 8,
             complete sequence
          Length = 85279

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aaatgaattttctctacaga 56
             ||||||||||||||||||||
Sbjct: 71445 aaatgaattttctctacaga 71464
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>emb|BX640506.12| Zebrafish DNA sequence from clone DKEY-271E14 in linkage group 12,
             complete sequence
          Length = 196667

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   gaatagtttgatgacatttt 284
             ||||||||||||||||||||
Sbjct: 16112 gaatagtttgatgacatttt 16131
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>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence
          Length = 199993

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     catttgtgttaaatgaataa 100
              ||||||||||||||||||||
Sbjct: 114437 catttgtgttaaatgaataa 114418
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>ref|XM_646095.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (178.t00011) partial mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   tgaagaaacagaaaatgaat 44
            ||||||||||||||||||||
Sbjct: 1044 tgaagaaacagaaaatgaat 1063
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>gb|AC110029.8| Mus musculus chromosome 1, clone RP23-46D11, complete sequence
          Length = 107242

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aatgaattttctctacagaa 57
             ||||||||||||||||||||
Sbjct: 79922 aatgaattttctctacagaa 79903
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>ref|XM_721931.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00801)
            partial mRNA
          Length = 7020

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 25   tgaagaaacagaaaatgaattttc 48
            |||||||||| |||||||||||||
Sbjct: 5352 tgaagaaacaaaaaatgaattttc 5375
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>ref|XM_672737.1| Plasmodium berghei strain ANKA hypothetical protein (PB001054.03.0)
            partial mRNA
          Length = 5142

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 25   tgaagaaacagaaaatgaattttc 48
            |||||||||| |||||||||||||
Sbjct: 1668 tgaagaaacaaaaaatgaattttc 1691
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>emb|AL583839.12| Human DNA sequence from clone RP11-165J3 on chromosome 9 Contains the 3'
              end of the PRKWNK2 gene for protein kinase, lysine
              deficient 2 (WNK2, NY-CO-43, SDCCAG43, P/OKcl.13), three
              novel genes, the 3' end of a novel gene and a CpG island,
              complete sequence
          Length = 140718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    aagtaagaagaatggcagat 493
              ||||||||||||||||||||
Sbjct: 119904 aagtaagaagaatggcagat 119923
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>emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D15 on chromosome 6q12-14.3
             Contains 3' end of COL12A1 gene  for collagen, type XII,
             alpha 1, complete sequence
          Length = 112292

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   actacatgccaactgtctga 408
             ||||||||||||||||||||
Sbjct: 56053 actacatgccaactgtctga 56034
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    acagattatgtatttgaatg 179
              ||||||||||||||||||||
Sbjct: 563222 acagattatgtatttgaatg 563241
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>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16
          Length = 349260

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gaacatcacgtcgagctcgg 143
             ||||||||||||||||||||
Sbjct: 66687 gaacatcacgtcgagctcgg 66706
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>gb|AC157733.2| Xenopus tropicalis clone ISB1-355J23, complete sequence
          Length = 82312

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 562   tccccttgtttgtttacttctggcaaat 589
             ||||||||||||||||| || |||||||
Sbjct: 26873 tccccttgtttgtttacgtcaggcaaat 26846
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     gaacatcacgtcgagctcgg 143
               ||||||||||||||||||||
Sbjct: 2809586 gaacatcacgtcgagctcgg 2809567



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     gaacatcacgtcgagctcgg 143
               ||||||||||||||||||||
Sbjct: 1395114 gaacatcacgtcgagctcgg 1395133
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     gaacatcacgtcgagctcgg 143
               ||||||||||||||||||||
Sbjct: 4665432 gaacatcacgtcgagctcgg 4665413
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>gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-131K21, complete sequence
          Length = 181602

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 570    tttgtttacttctggcaaatatca 593
              |||| |||||||||||||||||||
Sbjct: 175871 tttggttacttctggcaaatatca 175894
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 187      agtatctttcctatttcctc 206
                ||||||||||||||||||||
Sbjct: 13908270 agtatctttcctatttcctc 13908251
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>gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, complete sequence
          Length = 184147

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 570    tttgtttacttctggcaaatatca 593
              |||| |||||||||||||||||||
Sbjct: 167628 tttggttacttctggcaaatatca 167605
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>gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complete sequence
          Length = 232701

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcttctccttggctgctctg 265
             ||||||||||||||||||||
Sbjct: 99905 tcttctccttggctgctctg 99924
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 187      agtatctttcctatttcctc 206
                ||||||||||||||||||||
Sbjct: 13915612 agtatctttcctatttcctc 13915593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,535,288
Number of Sequences: 3902068
Number of extensions: 6535288
Number of successful extensions: 132527
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132281
Number of HSP's gapped (non-prelim): 246
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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