| Clone Name | rbags22f13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1577 Score = 153 bits (77), Expect = 5e-34 Identities = 97/101 (96%), Gaps = 2/101 (1%) Strand = Plus / Minus Query: 135 gtccatctcttccatcagagctggtctcgacctgtaa-caacgacgacacactggctggc 193 |||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| Sbjct: 1400 gtccatctct-ccatcagagctggtctcgacctgtaaacaacgaggacacactgcctggc 1342 Query: 194 taaggtgccctcaagctgctcaaggcgctactagcactctc 234 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 taaggtgccctcaagctgctcaaggcgctactagcactctc 1301 Score = 125 bits (63), Expect = 1e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 276 gatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcg 335 |||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||| Sbjct: 1267 gatcagtagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcg 1208 Query: 336 ctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||| Sbjct: 1207 ctggtgtacttgccgagctgcgc 1185
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 63349 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 63408 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 63409 cgctggtgtacttgccgagctgcgc 63433
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 97.6 bits (49), Expect = 2e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 337 ||||||| |||||||||||||||||||| ||| |||| | ||||||||||||||||| Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543454 Query: 338 ggtgtacttgccgagctgcgc 358 ||||||||||||||||||||| Sbjct: 3543453 ggtgtacttgccgagctgcgc 3543433
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 3469394 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3469453 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 3469454 cgctggtgtacttgccgagctgcgc 3469478
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full insert sequence Length = 1492 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 1265 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1206 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 1205 cgctggtgtacttgccgagctgcgc 1181
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full insert sequence Length = 1622 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 1261 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1202 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 1201 cgctggtgtacttgccgagctgcgc 1177
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 3478098 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3478157 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 3478158 cgctggtgtacttgccgagctgcgc 3478182
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 97.6 bits (49), Expect = 2e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 337 ||||||| |||||||||||||||||||| ||| |||| | ||||||||||||||||| Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543399 Query: 338 ggtgtacttgccgagctgcgc 358 ||||||||||||||||||||| Sbjct: 3543398 ggtgtacttgccgagctgcgc 3543378
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 97.6 bits (49), Expect = 2e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 337 ||||||| |||||||||||||||||||| ||| |||| | ||||||||||||||||| Sbjct: 58441 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 58382 Query: 338 ggtgtacttgccgagctgcgc 358 ||||||||||||||||||||| Sbjct: 58381 ggtgtacttgccgagctgcgc 58361
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp Length = 2915 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||| Sbjct: 2793 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 2734 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 2733 cgctggtgtacttgccgagctgcgc 2709
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence Length = 1761 Score = 85.7 bits (43), Expect = 9e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 280 agtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgctgg 339 ||||||||||||||||||||||||| ||| ||||| | ||||||||||||||| || Sbjct: 1404 agtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcggagg 1345 Query: 340 tgtacttgccgagctgcgc 358 ||||||||||||||||||| Sbjct: 1344 tgtacttgccgagctgcgc 1326
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds Length = 1302 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 274 cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 333 ||||| ||||| ||||||||||||||||||| || ||||| | ||||| ||||||| Sbjct: 1157 cggattagtagacgtagttcttgacgaacatgccttccttggcctcggcggcttcgccgt 1098 Query: 334 cgctggtgtacttgccgagctgcgc 358 ||||||||||||||||||||||||| Sbjct: 1097 cgctggtgtacttgccgagctgcgc 1073
>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full insert sequence Length = 2135 Score = 75.8 bits (38), Expect = 9e-11 Identities = 38/38 (100%) Strand = Plus / Minus Query: 321 gcggcctcgccgtcgctggtgtacttgccgagctgcgc 358 |||||||||||||||||||||||||||||||||||||| Sbjct: 1209 gcggcctcgccgtcgctggtgtacttgccgagctgcgc 1172
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 tacttacttacttagggtggcaaacaaag 31 ||||||||||||||||| |||||||||| Sbjct: 17686289 tacttacttacttagggatgcaaacaaag 17686261
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 tacttacttacttagggtggcaaacaaag 31 ||||||||||||||||| |||||||||| Sbjct: 90322 tacttacttacttagggatgcaaacaaag 90294
>gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H14, complete sequence Length = 118437 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 acatgttctctttggcagct 320 |||||||||||||||||||| Sbjct: 27603 acatgttctctttggcagct 27584
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 acatgttctctttggcagct 320 |||||||||||||||||||| Sbjct: 323939 acatgttctctttggcagct 323958
>gb|AC011070.8| Drosophila melanogaster clone BACR02B12, complete sequence Length = 168850 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aacaaaggcaacaacaacgc 44 |||||||||||||||||||| Sbjct: 155801 aacaaaggcaacaacaacgc 155820
>gb|AC007890.6| Drosophila melanogaster clone BACR02G21, complete sequence Length = 171563 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ggcaaacaaaggcaacaaca 40 |||||||||||||||||||| Sbjct: 2560 ggcaaacaaaggcaacaaca 2541
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ggcaaacaaaggcaacaaca 40 |||||||||||||||||||| Sbjct: 155393 ggcaaacaaaggcaacaaca 155374
>emb|CR559941.5| Zebrafish DNA sequence from clone DKEY-161O1 in linkage group 13, complete sequence Length = 89710 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gcagtaaaaccattccaaag 94 |||||||||||||||||||| Sbjct: 12372 gcagtaaaaccattccaaag 12353
>ref|NM_173273.1| Danio rerio digestive-organ expansion factor (def), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagtaaaaccattccaaag 94 |||||||||||||||||||| Sbjct: 1694 gcagtaaaaccattccaaag 1713
>gb|AF506211.1| Danio rerio DJ434O14.5-like protein mRNA, complete cds Length = 2445 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagtaaaaccattccaaag 94 |||||||||||||||||||| Sbjct: 1694 gcagtaaaaccattccaaag 1713
>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone BACR36D15, complete sequence Length = 159513 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aacaaaggcaacaacaacgc 44 |||||||||||||||||||| Sbjct: 129529 aacaaaggcaacaacaacgc 129510
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tgccctcaagctgctcaagg 218 |||||||||||||||||||| Sbjct: 2164719 tgccctcaagctgctcaagg 2164738
>gb|BC058062.1| Danio rerio digestive-organ expansion factor, mRNA (cDNA clone MGC:63753 IMAGE:2640310), complete cds Length = 2466 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagtaaaaccattccaaag 94 |||||||||||||||||||| Sbjct: 1673 gcagtaaaaccattccaaag 1692
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ggcaaacaaaggcaacaaca 40 |||||||||||||||||||| Sbjct: 175887 ggcaaacaaaggcaacaaca 175868
>gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 of 74 of the complete sequence Length = 300896 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aacaaaggcaacaacaacgc 44 |||||||||||||||||||| Sbjct: 87427 aacaaaggcaacaacaacgc 87408 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,522,052 Number of Sequences: 3902068 Number of extensions: 2522052 Number of successful extensions: 67012 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66863 Number of HSP's gapped (non-prelim): 143 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)