ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22f01 |
|---|---|
| Clone Library Name | barley_pub |
>UBCD4_DROME (P52486) Ubiquitin-conjugating enzyme E2-22 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 199 Score = 37.0 bits (84), Expect = 0.012 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 320 FVSTARYWTEAFAKSDST--GMEEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCS 150 F+ TA++WT A+A T + K+Q+L +MG E R+ L N + A E L S Sbjct: 141 FLLTAKHWTNAYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFS 199
>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)| Length = 428 Score = 35.0 bits (79), Expect = 0.045 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = -3 Query: 311 TARYWTEAFAKSDSTGMEEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKL 156 T R A + T E+ +++L+++GFP D V ALK NG+ A L Sbjct: 375 TGRSTAGATTATGRTFPEQTIKQLMDLGFPRDAVVKALKQTNGNAEFAASLL 426
>Y3846_ARATH (Q8LB17) Protein At3g58460| Length = 403 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -3 Query: 260 EEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCS 150 EE++QKLV MGF V AL + + D +A+E L S Sbjct: 364 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 400
>EF3_CANGA (O93796) Elongation factor 3 (EF-3)| Length = 1045 Score = 30.8 bits (68), Expect = 0.86 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 287 FAKSDSTGMEEKVQ-KLVEMGFPEDMVRSALKSVNGDENMAL 165 F S G +E + KLVE GF E+M+ + S++G M L Sbjct: 511 FVVSSEVGTKEAITAKLVEFGFTEEMINMPISSLSGGWKMKL 552
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/69 (28%), Positives = 32/69 (46%) Frame = -3 Query: 296 TEAFAKSDSTGMEEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCSG*RPCMAYKKC 117 +E K+DS+ EE VQ L E GF R L N + A++ + + P ++++ Sbjct: 630 SELLPKADSSVSEENVQSLCEFGFTVAQARKGLLESNNNIERAVDWILN--HPDESFEEP 687 Query: 116 KLRGHSYGI 90 L G I Sbjct: 688 PLEGSDSSI 696
>RRPL_SEOU8 (P27314) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 2151 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Frame = -3 Query: 263 MEEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCSG*R------PCMAYKKCKLR 108 MEE ++LV G +R + VNG +++ L K SG PC+ YK C LR Sbjct: 1767 MEEVSKELVRCG-----MRFNTEQVNGVKHLVLFKTDSGFEWGKPNIPCIVYKNCALR 1819
>URED_RHIME (P42888) Urease accessory protein ureD| Length = 277 Score = 29.6 bits (65), Expect = 1.9 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Frame = +3 Query: 105 ATQFTLLIGHTRPSARAELLESHVLVAVHALQGASHHILGEAXXXXXXXXXXXASGVTLC 284 A F L+ + P ++L + + +A HAL G SH+ +G A G L Sbjct: 199 AAAFATLV-YAAPDCESQLSKLRLALAGHALSGVSHYDVG--GRDKIVARVAAADGFALR 255 Query: 285 KRLGPIAS------STNKMWPL 332 K L P+ S S K+W L Sbjct: 256 KILIPLISHLRKDASVPKVWTL 277
>UCP3_SCHPO (O74345) UBA domain-containing protein 3| Length = 601 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 326 PHFVSTARYWTEAFAKSDSTGMEEKVQKLVEMGFPEDMVRS-ALKSVNGDENMALEKL 156 P S+++ A + + + + L +MGF +D V + AL+ NGD A+EK+ Sbjct: 137 PRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVNTHALEETNGDVTRAIEKI 194
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 260 EEKVQKLVEMGFPEDMVRSALKSVNGDENMALE 162 + V L+ GF ED+ R ALK+ GD A + Sbjct: 673 QSSVDTLLSFGFAEDVARKALKASGGDIEKATD 705
>IF140_HUMAN (Q96RY7) Intraflagellar transport 140 homolog (WD and| tetratricopeptide repeats protein 2) Length = 1462 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -3 Query: 332 QRPHFVSTARYWTEAFAKSDSTGMEEKVQKLVEMGFPEDMVRSA 201 Q HF + A+ + A G+++++ L + PEDM+ +A Sbjct: 1028 QAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAA 1071
>MUD1_SCHPO (Q10256) UBA-domain protein mud1 (UBA-domain-containing protein 1)| (DNA-damage-inducible protein DDI1 homolog) Length = 332 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 266 GMEEKVQKLVEMGFPEDMVRSALKSVNGDENMA 168 G+ K+ +LV MGF AL + NGD ++A Sbjct: 295 GLNSKIAQLVSMGFDPLEAAQALDAANGDLDVA 327
>YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I| Length = 507 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 266 GMEEKVQKLVEMGFPEDMVRSALKSVNGDENMA 168 G+ K+ +LV MGF AL + NGD ++A Sbjct: 470 GLNSKIAQLVSMGFDPLEAAQALDAANGDLDVA 502
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 260 EEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCS 150 +E +++L +GFPE +V A + +EN+A L S Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 357
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 260 EEKVQKLVEMGFPEDMVRSALKSVNGDENMALEKLCS 150 +E +++L +GFPE +V A + +EN+A L S Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 357
>FUMC_SALTY (Q8ZPL7) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 467 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -1 Query: 340 LRDKGHILLVLLAIGPRRLQRVTPLAWKKRCRSW 239 LRDK H ++ IG LQ TPL + W Sbjct: 171 LRDKSHAFADIVKIGRTHLQDATPLTLGQEISGW 204
>FUMC_SALTI (Q8Z6R6) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 467 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -1 Query: 340 LRDKGHILLVLLAIGPRRLQRVTPLAWKKRCRSW 239 LRDK H ++ IG LQ TPL + W Sbjct: 171 LRDKSHAFADIVKIGRTHLQDATPLTLGQEISGW 204
>Y2896_MYCTU (Q10817) Hypothetical protein Rv2896c/MT2964| Length = 389 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = -1 Query: 337 RDKGHILLVLLAIGPRRLQRVTPLA 263 R GH LVL A+GP RL V P A Sbjct: 99 RPCGHSPLVLWALGPARLDEVAPRA 123
>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2| Length = 4836 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 251 VQKLVEMGFPEDMVRSALKSVNGDENMA 168 V +L+EMGFP + ALKS+ G A Sbjct: 2463 VVQLMEMGFPRKNIEFALKSLTGTSGNA 2490
>AT11A_MOUSE (P98197) Probable phospholipid-transporting ATPase IH (EC 3.6.3.1)| (ATPase class I type 11A) (ATPase IS) Length = 1187 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 134 MAYKKCKLRGHSYGIAILANAPVMP 60 MA+K+C + GH Y ++ N V+P Sbjct: 424 MAFKECCIEGHVYVPHVICNGQVLP 448
>DXS_BUCAI (P57536) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 608 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +1 Query: 142 LQPEQSFSRAMFSSPFTLFRALLTISSGKPISTSFCTFSSMPVESLFANASVQ*RAVL 315 L P Q F A+ F A L IS KP+ + + TF + L + ++Q +VL Sbjct: 345 LFPNQYFDVAIAEQHAVTFAAGLAISGYKPVVSIYSTFFQRAYDQLIHDIALQKLSVL 402 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,661,043 Number of Sequences: 219361 Number of extensions: 832657 Number of successful extensions: 2235 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2234 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
