ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21p24 |
|---|---|
| Clone Library Name | barley_pub |
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 37.4 bits (85), Expect = 0.048 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = -2 Query: 611 QKLIIKHDNLKKLSLWGCSAIDALYVK-----CPELIDLNLNSCTNLHAERLLL---QCP 456 Q L+ LK L L GC+ ++ +K CPEL+ LNL +C + E L+ C Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247 Query: 455 NLKNVHAFGCQDM 417 L+++ A GC ++ Sbjct: 248 KLQSLCASGCSNI 260
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 37.4 bits (85), Expect = 0.048 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = -2 Query: 611 QKLIIKHDNLKKLSLWGCSAIDALYVK-----CPELIDLNLNSCTNLHAERLLL---QCP 456 Q L+ LK L L GC+ ++ +K CPEL+ LNL +C + E L+ C Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247 Query: 455 NLKNVHAFGCQDM 417 L+++ A GC ++ Sbjct: 248 KLQSLCASGCSNI 260
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 37.4 bits (85), Expect = 0.048 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = -2 Query: 611 QKLIIKHDNLKKLSLWGCSAIDALYVK-----CPELIDLNLNSCTNLHAERLLL---QCP 456 Q L+ LK L L GC+ ++ +K CPEL+ LNL +C + E L+ C Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247 Query: 455 NLKNVHAFGCQDM 417 L+++ A GC ++ Sbjct: 248 KLQSLCASGCSNI 260
>SKP2_MOUSE (Q9Z0Z3) S-phase kinase-associated protein 2 (F-box protein Skp2)| (Cyclin A/CDK2-associated protein p45) (F-box/WD-40 protein 1) (FWD1) Length = 424 Score = 35.0 bits (79), Expect = 0.24 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%) Frame = -2 Query: 650 CPKLPTLKKQPMRQ-----KLIIKHDNLKKLSLWGC-----SAIDALYVKCPELIDLNLN 501 C KL L + ++ K + +++NL +L+L GC SA+ L C L +LNL+ Sbjct: 205 CSKLQNLSLEGLQLSDPIVKTLAQNENLVRLNLCGCSGFSESAVATLLSSCSRLDELNLS 264 Query: 500 SC---TNLHAERLLLQCPN 453 C T H + + PN Sbjct: 265 WCFDFTEKHVQAAVAHLPN 283
>YLS5_CAEEL (P34390) Hypothetical protein F09G8.5| Length = 484 Score = 33.9 bits (76), Expect = 0.53 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -2 Query: 590 DNLKKLSLWGCSAIDALYVKCPELIDLNLNSCTNLHAERLLLQCPNLKNVH 438 +N+KKL+LWGC D + L+++ S + + L C NLK V+ Sbjct: 118 ENVKKLNLWGCGIDDIQVCEKMSLLEVLSLSVNEVKSLAPLQHCKNLKEVY 168
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Frame = -2 Query: 584 LKKLSLWGCSAIDALYVK-----CPELIDLNLNSCTNLHAERLLLQCPNLKNVHAF---G 429 LK L L GC+ ++ +K C EL+ LNL SC+ + E ++ C + A G Sbjct: 184 LKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSG 243 Query: 428 CQDM 417 C ++ Sbjct: 244 CSNL 247
>AN32D_HUMAN (O95626) Acidic leucine-rich nuclear phosphoprotein 32 family| member D (Tumorigenic protein pp32r2) Length = 131 Score = 31.6 bits (70), Expect = 2.6 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = -2 Query: 596 KHDNLKKLSLWGCSA---IDALYVKCPELIDLNL--NSCTNLHAERLLLQCPNLKNVHAF 432 K + LKKL L A ++ L KCP LI LNL N +L L + NL+++ F Sbjct: 62 KLNKLKKLELSSNRASVGLEVLAEKCPNLIHLNLSGNKIKDLSTIEPLKKLENLESLDLF 121 Query: 431 GCQ 423 C+ Sbjct: 122 TCE 124
>AN32A_HUMAN (P39687) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) (HLA-DR-associated prote Length = 249 Score = 31.2 bits (69), Expect = 3.4 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = -2 Query: 596 KHDNLKKLSLWG---CSAIDALYVKCPELIDLNL--NSCTNLHAERLLLQCPNLKNVHAF 432 K + LKKL L ++ L KCP L LNL N +L L + NLK++ F Sbjct: 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 Query: 431 GCQ 423 C+ Sbjct: 122 NCE 124
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 31.2 bits (69), Expect = 3.4 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Frame = -2 Query: 584 LKKLSLWGCSAIDALYVK-----CPELIDLNLNSCTNLHAERLLLQCPNLKNVHAF---G 429 LK L L GC+ ++ +K C EL+ LNL SC+ + + ++ C + A G Sbjct: 184 LKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSG 243 Query: 428 CQDM 417 C ++ Sbjct: 244 CSNL 247
>AN32A_BOVIN (P51122) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Leucine-rich acidic nuclear protein) (Fragments) Length = 173 Score = 31.2 bits (69), Expect = 3.4 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = -2 Query: 596 KHDNLKKLSLWG---CSAIDALYVKCPELIDLNL--NSCTNLHAERLLLQCPNLKNVHAF 432 K + LKKL L ++ L KCP L LNL N +L L + NLK++ F Sbjct: 59 KLNKLKKLELSDNRISGGLEVLAEKCPNLTHLNLRGNKIKDLSTIEPLKKLENLKSLDLF 118 Query: 431 GCQ 423 C+ Sbjct: 119 NCE 121
>RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like protein 1)| (pNd13/pNd14) Length = 885 Score = 30.8 bits (68), Expect = 4.5 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Frame = -2 Query: 587 NLKKLSLWGCSAIDALYVKCP-----------ELIDLNLNSCTNLHAERLLLQCPNLKNV 441 NL +S+W C + + K P L ++ + C L LL PNL N+ Sbjct: 712 NLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINL 771 Query: 440 HAFGCQDM 417 +GC+ + Sbjct: 772 RVWGCKHL 779
>AN32A_RAT (P49911) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Leucine-rich acidic nuclear protein) Length = 247 Score = 30.4 bits (67), Expect = 5.8 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = -2 Query: 596 KHDNLKKLSLWG---CSAIDALYVKCPELIDLNL--NSCTNLHAERLLLQCPNLKNVHAF 432 K + LKKL L ++ L KCP L LNL N +L L + NLK++ F Sbjct: 62 KLNKLKKLELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 Query: 431 GCQDMLIGAIR 399 C+ + A R Sbjct: 122 NCEVTNLNAYR 132
>AN32A_MOUSE (O35381) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) Length = 247 Score = 30.4 bits (67), Expect = 5.8 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = -2 Query: 596 KHDNLKKLSLWG---CSAIDALYVKCPELIDLNL--NSCTNLHAERLLLQCPNLKNVHAF 432 K + LKKL L ++ L KCP L LNL N +L L + NLK++ F Sbjct: 62 KLNKLKKLELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 Query: 431 GCQDMLIGAIR 399 C+ + A R Sbjct: 122 NCEVTNLNAYR 132
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -2 Query: 530 CPELIDLNLNSCTNLHAER---LLLQCPNLKNVHAFGC 426 CPEL L ++ C N+ E ++ CPNL+++ GC Sbjct: 211 CPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGC 248
>FXL13_MOUSE (Q8CDU4) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 790 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -2 Query: 587 NLKKLSLWGCSAIDALYVKCPELIDLNLNSCTNL 486 NL SL G S++ L +CP L LNL +C +L Sbjct: 536 NLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHL 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,976,175 Number of Sequences: 219361 Number of extensions: 1825958 Number of successful extensions: 3680 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3678 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
