ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP he... 31 2.5
2HYAL1_MOUSE (Q91ZJ9) Hyaluronidase-1 precursor (EC 3.2.1.35) (Hy... 30 4.2
3MGR1_RAT (P23385) Metabotropic glutamate receptor 1 precursor (m... 29 9.4
4MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor ... 29 9.4

>RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP hematopoietic|
           protein C1) (p115)
          Length = 946

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CAKVENKYTLSTSKC*TANTNYFSFLVLNLLVCIARGEH 132
           C K  N+Y LS +    A +NY+   VL+L+ C   G H
Sbjct: 239 CTKARNEYLLSLASVNAAVSNYYLHDVLDLMDCCDTGFH 277



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>HYAL1_MOUSE (Q91ZJ9) Hyaluronidase-1 precursor (EC 3.2.1.35) (Hyal-1)|
           (Hyaluronoglucosaminidase-1)
          Length = 462

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 73  TNYFSFLVLNLLVCIARGEHSFGHNLGT*VWRHQLPT-PDSDPYQHPEAAGLESTTGITT 249
           T Y   + +++   +A  E SF  +  T  +R +L T P   P   P   GL        
Sbjct: 73  TEYGVDVDVSVFDVVANKEQSFQGSNMTIFYREELGTYPYYTPTGEPVFGGLPQNAS--- 129

Query: 250 LQVLATHLAHSFKDMA*ALQWP 315
              L THLAH+F+D+  A+  P
Sbjct: 130 ---LVTHLAHTFQDIKAAMPEP 148



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>MGR1_RAT (P23385) Metabotropic glutamate receptor 1 precursor (mGluR1)|
          Length = 1199

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = -2

Query: 583  NSSSRNRPDIHPSKEMNPTKMNLSQTMSLHEKQPQQNTYISPQTVTVRLMQVSYSVGRKS 404
            NS+ ++     P     P   ++ Q +S+H K    N     QT  ++ +  SY    KS
Sbjct: 887  NSNGKSVSWSEPGGRQAPKGQHVWQRLSVHVKT---NETACNQTAVIKPLTKSYQGSGKS 943

Query: 403  LGYMTWRTGALYELHGGDHT 344
            L +    T  LY +   D+T
Sbjct: 944  LTFSDASTKTLYNVEEEDNT 963



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>MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor (mGluR1)|
          Length = 1199

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = -2

Query: 583  NSSSRNRPDIHPSKEMNPTKMNLSQTMSLHEKQPQQNTYISPQTVTVRLMQVSYSVGRKS 404
            NS+ ++     P     P   ++ Q +S+H K    N     QT  ++ +  SY    KS
Sbjct: 887  NSNGKSVSWSEPGGRQAPKGQHVWQRLSVHVKT---NETACNQTAVIKPLTKSYQGSGKS 943

Query: 403  LGYMTWRTGALYELHGGDHT 344
            L +    T  LY +   D+T
Sbjct: 944  LTFSDASTKTLYNVEEEDNT 963


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,814,434
Number of Sequences: 219361
Number of extensions: 1533842
Number of successful extensions: 3957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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