ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPGF5_MOUSE (Q8C0Q9) Rap guanine nucleotide exchange factor 5 (G... 30 6.0
2GLGA_CLOAB (Q97GX6) Glycogen synthase (EC 2.4.1.21) (Starch [bac... 30 7.8

>RPGF5_MOUSE (Q8C0Q9) Rap guanine nucleotide exchange factor 5 (Guanine|
           nucleotide exchange factor for Rap1) (M-Ras-regulated
           Rap GEF) (MR-GEF)
          Length = 814

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 37  LLQHSTYLRQQRRHINIWATRGLLDLGIFSSLETHL 144
           LL+H  +++ +   I +W    LLD+GI SS++ HL
Sbjct: 72  LLEHCPFVQCRSMAIGVWQL--LLDMGIMSSVDQHL 105



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>GLGA_CLOAB (Q97GX6) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 477

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 612 DEGDRFTDHSRKLVKCRDPSHTFNKI*LDMIACRDWRARII 490
           D+G+RF   SR +++       FN    D+I C DW+  II
Sbjct: 103 DDGERFAYFSRGVLQAITYMQDFNP---DIIQCNDWQTAII 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,043,122
Number of Sequences: 219361
Number of extensions: 1473106
Number of successful extensions: 2514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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