ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21p19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ333376.1| Triticum aestivum calcium-dependent protein kinase (CPK2B) mRNA, complete cds Length = 1939 Score = 896 bits (452), Expect = 0.0 Identities = 528/550 (96%), Gaps = 4/550 (0%) Strand = Plus / Minus Query: 75 caaccacatgaatacaca-tgcagttcatcgcattgtgacctccat--ccagcgtctaag 131 |||||||| ||||||||| ||||||||||||||| | |||||||| |||||||||||| Sbjct: 1923 caaccacaggaatacacaatgcagttcatcgcatcatcacctccatatccagcgtctaag 1864 Query: 132 attcggttacaaccaaaggagtgcgccatttcctccctctagctactgagtactactagg 191 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1863 attcggttacaaccaaaggagtgcgccattccctccctctagctactgagtactactagg 1804 Query: 192 agactccatctatctccc-ttcccctcttagattagtagtccagctgatcaggcatgcaa 250 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1803 agactccatctatctcccatttccctcttagattagtagtccagctgatcaggcatgcaa 1744 Query: 251 aaactttcacaaactggcatccaccaggtatggcatttctcctccccatgccaacttagc 310 ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1743 aaactttcacaaaatggcatccaccaggtatggcatttctcctccccatgccggcttagc 1684 Query: 311 tgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggtccgcc 370 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1683 tgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggttcgcc 1624 Query: 371 tccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatcgattt 430 |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 1623 tccctgttgcgctggcattaccctttctcatcatcgctgtgaactcactgtaatcgattt 1564 Query: 431 gcccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagac 490 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1563 gcccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacatcatccagac 1504 Query: 491 caaattcccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgt 550 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 caaatttgcggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgt 1444 Query: 551 caaaaaacgagaatgctgacaccaagttctcctccctctctagtttgntcatgtgcaatg 610 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1443 caaaaaacgagaatgctgacaccaagttctcctccctctctagtttattcatgtgcaatg 1384 Query: 611 tagctgcgat 620 |||||||||| Sbjct: 1383 tagctgcgat 1374
>gb|DQ333377.1| Triticum aestivum calcium-dependent protein kinase (CPK2A) mRNA, complete cds Length = 1942 Score = 872 bits (440), Expect = 0.0 Identities = 525/550 (95%), Gaps = 4/550 (0%) Strand = Plus / Minus Query: 75 caaccacatgaatacaca-tgcagttcatcgcattgtgacctccat--ccagcgtctaag 131 |||||||| ||||||||| ||||||||||||||| | |||||||| |||||||||||| Sbjct: 1926 caaccacaggaatacacaatgcagttcatcgcatcatcacctccatatccagcgtctaag 1867 Query: 132 attcggttacaaccaaaggagtgcgccatttcctccctctagctactgagtactactagg 191 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1866 attcggttacaaccaaaggagtgcgccattccctccctctagctactgagtactactagg 1807 Query: 192 agactccatctatctccc-ttcccctcttagattagtagtccagctgatcaggcatgcaa 250 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1806 agactccatctatctcccatttccctcttagattagtagtccagctgatcaggcatgcaa 1747 Query: 251 aaactttcacaaactggcatccaccaggtatggcatttctcctccccatgccaacttagc 310 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1746 aaactttcacaaaatggcatccaccaggtatggcatttctcctccccatgccgacttagc 1687 Query: 311 tgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggtccgcc 370 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct: 1686 tgttgctgggattcaagatgtcaccgagattcagattcaagctgttcctcatggttcgcc 1627 Query: 371 tccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatcgattt 430 |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1626 tccctgttgcacccgcattgccctttctcatcatcgctgtgaactcactgtaatcgattt 1567 Query: 431 gcccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagac 490 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 1566 gcccatcattgttctgatcgacatctttgatcatatcctcaaggtgaacatcatccaggc 1507 Query: 491 caaattcccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgt 550 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1506 caaattgacggcatgcatgtgatagctcatcgatggtgataaatccacttccatccttgt 1447 Query: 551 caaaaaacgagaatgctgacaccaagttctcctccctctctagtttgntcatgtgcaatg 610 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1446 caaaaaacgagaatgctgacaccaagttctcctccctctctagtttattcatgtgcaatg 1387 Query: 611 tagctgcgat 620 |||||||||| Sbjct: 1386 tagctgcgat 1377
>gb|AY301062.2| Zea mays calcium-dependent protein kinase ZmCPK11 mRNA, complete cds Length = 1738 Score = 329 bits (166), Expect = 6e-87 Identities = 270/305 (88%) Strand = Plus / Minus Query: 313 ttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggtccgcctc 372 |||||||||||||||| ||||||||||||| | |||||||||||||||||| | ||| Sbjct: 1529 ttgctgggattcaagagttcgccgagattcaagtgcaagctgttcctcatggttctcctt 1470 Query: 373 cctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatcgatttgc 432 |||||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 1469 cctgttgcaccagcattgcccttcctcatcatcgccgtgaactcgctgtagtcgatttgg 1410 Query: 433 ccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagacca 492 || ||||||||||| || |||||||| ||||||||||| ||||| | |||||| |||||| Sbjct: 1409 ccatcattgttctggtcaacatctttaatcatatcctcgaggtggaggtcatcgagacca 1350 Query: 493 aattcccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgtca 552 ||||| || ||||| ||||| |||||||||||||| || || ||||||||||| |||||| Sbjct: 1349 aattcgcgacatgcttgtgacagctcatcgatggttataaagccacttccatctttgtca 1290 Query: 553 aaaaacgagaatgctgacaccaagttctcctccctctctagtttgntcatgtgcaatgta 612 ||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||| ||| Sbjct: 1289 aaaaacgagaatgctgaaaccaagttttcctccctctccagtttgttcatgtgcaacgta 1230 Query: 613 gctgc 617 ||||| Sbjct: 1229 gctgc 1225
>gb|AY144497.1| Oryza sativa (japonica cultivar-group) OsCDPK protein mRNA, complete cds Length = 1907 Score = 248 bits (125), Expect = 2e-62 Identities = 256/300 (85%) Strand = Plus / Minus Query: 306 ttagctgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggt 365 ||||||||||||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct: 1574 ttagctgttgctggggttcaagatctcaccaagattcaactgcaagctgttcctcatggt 1515 Query: 366 ccgcctccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatc 425 | ||| || | | | || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 1514 tctccttccagctccaccagcattgccctttctcatcatcgccgtgaactcgctgtagtc 1455 Query: 426 gatttgcccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatc 485 ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 1454 aatttgtccgtcattgttttgatcaacatctttaatcatatcctcaaggtgaagatcatc 1395 Query: 486 cagaccaaattcccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatc 545 || |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct: 1394 aaggccaaattcgcggcatgcttgtgacagctcatcaatagttatgaaaccacttccatc 1335 Query: 546 cttgtcaaaaaacgagaatgctgacaccaagttctcctccctctctagtttgntcatgtg 605 ||||| ||||| ||||||||||| || ||||| |||||||||||||| || ||||||| Sbjct: 1334 tttgtcgaaaaatgagaatgctgatactaagttttcctccctctctagcttattcatgtg 1275
>dbj|AK102308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B04, full insert sequence Length = 2524 Score = 248 bits (125), Expect = 2e-62 Identities = 256/300 (85%) Strand = Plus / Minus Query: 306 ttagctgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggt 365 ||||||||||||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct: 2203 ttagctgttgctggggttcaagatctcaccaagattcaactgcaagctgttcctcatggt 2144 Query: 366 ccgcctccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatc 425 | ||| || | | | || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 2143 tctccttccagctccaccagcattgccctttctcatcatcgccgtgaactcgctgtagtc 2084 Query: 426 gatttgcccgtcattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatc 485 ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 2083 aatttgtccgtcattgttttgatcaacatctttaatcatatcctcaaggtgaagatcatc 2024 Query: 486 cagaccaaattcccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatc 545 || |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct: 2023 aaggccaaattcgcggcatgcttgtgacagctcatcaatagttatgaaaccacttccatc 1964 Query: 546 cttgtcaaaaaacgagaatgctgacaccaagttctcctccctctctagtttgntcatgtg 605 ||||| ||||| ||||||||||| || ||||| |||||||||||||| || ||||||| Sbjct: 1963 tttgtcgaaaaatgagaatgctgatactaagttttcctccctctctagcttattcatgtg 1904
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 155 bits (78), Expect = 2e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 437 cattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaatt 496 ||||||| ||||| |||||||| ||||||||||||||||||| ||||| || ||||||| Sbjct: 70169 cattgttttgatcaacatctttaatcatatcctcaaggtgaagatcatcaaggccaaatt 70228 Query: 497 cccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaa 556 | |||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| |||| Sbjct: 70229 cgcggcatgcttgtgacagctcatcaatagttatgaaaccacttccatctttgtcgaaaa 70288 Query: 557 acgagaatgctgacaccaagttctcctccctctctagtttgntcatgtg 605 | ||||||||||| || ||||| |||||||||||||| || ||||||| Sbjct: 70289 atgagaatgctgatactaagttttcctccctctctagcttattcatgtg 70337 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/132 (84%) Strand = Plus / Plus Query: 306 ttagctgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggt 365 ||||||||||||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct: 69952 ttagctgttgctggggttcaagatctcaccaagattcaactgcaagctgttcctcatggt 70011 Query: 366 ccgcctccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatc 425 | ||| || | | | || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 70012 tctccttccagctccaccagcattgccctttctcatcatcgccgtgaactcgctgtagtc 70071 Query: 426 gatttgcccgtc 437 ||||| ||||| Sbjct: 70072 aatttgtccgtc 70083
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 155 bits (78), Expect = 2e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 437 cattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaatt 496 ||||||| ||||| |||||||| ||||||||||||||||||| ||||| || ||||||| Sbjct: 3476214 cattgttttgatcaacatctttaatcatatcctcaaggtgaagatcatcaaggccaaatt 3476273 Query: 497 cccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaa 556 | |||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| |||| Sbjct: 3476274 cgcggcatgcttgtgacagctcatcaatagttatgaaaccacttccatctttgtcgaaaa 3476333 Query: 557 acgagaatgctgacaccaagttctcctccctctctagtttgntcatgtg 605 | ||||||||||| || ||||| |||||||||||||| || ||||||| Sbjct: 3476334 atgagaatgctgatactaagttttcctccctctctagcttattcatgtg 3476382 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/132 (84%) Strand = Plus / Plus Query: 306 ttagctgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggt 365 ||||||||||||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct: 3475997 ttagctgttgctggggttcaagatctcaccaagattcaactgcaagctgttcctcatggt 3476056 Query: 366 ccgcctccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatc 425 | ||| || | | | || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 3476057 tctccttccagctccaccagcattgccctttctcatcatcgccgtgaactcgctgtagtc 3476116 Query: 426 gatttgcccgtc 437 ||||| ||||| Sbjct: 3476117 aatttgtccgtc 3476128
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 155 bits (78), Expect = 2e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 437 cattgttctgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaatt 496 ||||||| ||||| |||||||| ||||||||||||||||||| ||||| || ||||||| Sbjct: 3484918 cattgttttgatcaacatctttaatcatatcctcaaggtgaagatcatcaaggccaaatt 3484977 Query: 497 cccggcatgcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaa 556 | |||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| |||| Sbjct: 3484978 cgcggcatgcttgtgacagctcatcaatagttatgaaaccacttccatctttgtcgaaaa 3485037 Query: 557 acgagaatgctgacaccaagttctcctccctctctagtttgntcatgtg 605 | ||||||||||| || ||||| |||||||||||||| || ||||||| Sbjct: 3485038 atgagaatgctgatactaagttttcctccctctctagcttattcatgtg 3485086 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/132 (84%) Strand = Plus / Plus Query: 306 ttagctgttgctgggattcaagatgtcgccgagattcagattcaagctgttcctcatggt 365 ||||||||||||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct: 3484701 ttagctgttgctggggttcaagatctcaccaagattcaactgcaagctgttcctcatggt 3484760 Query: 366 ccgcctccctgttgcgccggcattgcccttcctcatcatcgctgtgaactcactgtaatc 425 | ||| || | | | || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 3484761 tctccttccagctccaccagcattgccctttctcatcatcgccgtgaactcgctgtagtc 3484820 Query: 426 gatttgcccgtc 437 ||||| ||||| Sbjct: 3484821 aatttgtccgtc 3484832
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 131 bits (66), Expect = 3e-27 Identities = 146/173 (84%) Strand = Plus / Plus Query: 445 tgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaattcccggcat 504 ||||| ||||||||||||||||||||||| ||||| ||| || ||||| | ||| Sbjct: 3552978 tgatccacatctttgatcatatcctcaagatgaacatcagaaaggccaaactgttcgcag 3553037 Query: 505 gcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaat 564 || || || |||||||| ||||| ||||| |||||||||||||| ||||| |||| |||| Sbjct: 3553038 gcttgcgagagctcatcaatggttatgaagccacttccatccttatcaaagaacgtgaat 3553097 Query: 565 gctgacaccaagttctcctccctctctagtttgntcatgtgcaatgtagctgc 617 |||||||||||||| ||||||||||| ||||| |||||||||| |||||||| Sbjct: 3553098 gctgacaccaagttttcctccctctccagtttattcatgtgcaaagtagctgc 3553150 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 317 tgggattcaagatgtcgccgagattcagattcaagctgttcctcat 362 |||| |||||||||||||| ||||||| | ||||||||||||||| Sbjct: 3552712 tgggtttcaagatgtcgccaagattcacacgcaagctgttcctcat 3552757 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 385 gcattgcccttcctcatcatcgctgtgaactcactgtaatcgatttg 431 ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct: 3552813 gcattgccctttctcatcatcgcggcaaactcgctgtaatcaatttg 3552859 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 gtccagctgatcaggcatgcaaaa 252 ||||||||||| |||||||||||| Sbjct: 3552646 gtccagctgatgaggcatgcaaaa 3552669
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 131 bits (66), Expect = 3e-27 Identities = 146/173 (84%) Strand = Plus / Plus Query: 445 tgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaattcccggcat 504 ||||| ||||||||||||||||||||||| ||||| ||| || ||||| | ||| Sbjct: 3552923 tgatccacatctttgatcatatcctcaagatgaacatcagaaaggccaaactgttcgcag 3552982 Query: 505 gcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaat 564 || || || |||||||| ||||| ||||| |||||||||||||| ||||| |||| |||| Sbjct: 3552983 gcttgcgagagctcatcaatggttatgaagccacttccatccttatcaaagaacgtgaat 3553042 Query: 565 gctgacaccaagttctcctccctctctagtttgntcatgtgcaatgtagctgc 617 |||||||||||||| ||||||||||| ||||| |||||||||| |||||||| Sbjct: 3553043 gctgacaccaagttttcctccctctccagtttattcatgtgcaaagtagctgc 3553095 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 317 tgggattcaagatgtcgccgagattcagattcaagctgttcctcat 362 |||| |||||||||||||| ||||||| | ||||||||||||||| Sbjct: 3552657 tgggtttcaagatgtcgccaagattcacacgcaagctgttcctcat 3552702 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 385 gcattgcccttcctcatcatcgctgtgaactcactgtaatcgatttg 431 ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct: 3552758 gcattgccctttctcatcatcgcggcaaactcgctgtaatcaatttg 3552804 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 gtccagctgatcaggcatgcaaaa 252 ||||||||||| |||||||||||| Sbjct: 3552591 gtccagctgatgaggcatgcaaaa 3552614
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 131 bits (66), Expect = 3e-27 Identities = 146/173 (84%) Strand = Plus / Plus Query: 445 tgatcgacatctttgatcatatcctcaaggtgaacgtcatccagaccaaattcccggcat 504 ||||| ||||||||||||||||||||||| ||||| ||| || ||||| | ||| Sbjct: 67906 tgatccacatctttgatcatatcctcaagatgaacatcagaaaggccaaactgttcgcag 67965 Query: 505 gcatgtgatagctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaat 564 || || || |||||||| ||||| ||||| |||||||||||||| ||||| |||| |||| Sbjct: 67966 gcttgcgagagctcatcaatggttatgaagccacttccatccttatcaaagaacgtgaat 68025 Query: 565 gctgacaccaagttctcctccctctctagtttgntcatgtgcaatgtagctgc 617 |||||||||||||| ||||||||||| ||||| |||||||||| |||||||| Sbjct: 68026 gctgacaccaagttttcctccctctccagtttattcatgtgcaaagtagctgc 68078 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 317 tgggattcaagatgtcgccgagattcagattcaagctgttcctcat 362 |||| |||||||||||||| ||||||| | ||||||||||||||| Sbjct: 67640 tgggtttcaagatgtcgccaagattcacacgcaagctgttcctcat 67685 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 385 gcattgcccttcctcatcatcgctgtgaactcactgtaatcgatttg 431 ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct: 67741 gcattgccctttctcatcatcgcggcaaactcgctgtaatcaatttg 67787 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 gtccagctgatcaggcatgcaaaa 252 ||||||||||| |||||||||||| Sbjct: 67574 gtccagctgatgaggcatgcaaaa 67597
>gb|AY394009.1| Vitis labrusca x Vitis vinifera calcium-dependent protein kinase (VCPK1) mRNA, complete cds Length = 1714 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 |||||||| ||||| ||| | |||||| ||| ||||||||||| ||||||||||||||| Sbjct: 1363 agctcatcaatggtaatgtaaccacttttatctttgtcaaaaaaggagaatgctgacacc 1304 Query: 574 aagttctcctccctctc 590 || || ||||||||||| Sbjct: 1303 aaattttcctccctctc 1287
>ref|NM_127284.2| Arabidopsis thaliana CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calcium- and calmodulin-dependent protein kinase> AT2G17290 (CPK6) mRNA, complete cds Length = 2332 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 1751 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 1711
>gb|AY140007.1| Arabidopsis thaliana putative calmodulin-domain protein kinase CPK6 (At2g17290) mRNA, complete cds Length = 2197 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 1711 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 1671
>gb|U31835.1|ATU31835 Arabidopsis thaliana calmodulin-domain protein kinase CDPK isoform 6 (CPK6) mRNA, complete cds Length = 2036 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 1510 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 1470
>gb|BT002600.1| Arabidopsis thaliana putative calmodulin-domain protein kinase CPK6 (At2g17290) mRNA, complete cds Length = 1735 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 1448 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 1408
>dbj|D28582.1|ATHATCDPK Arabidopsis thaliana mRNA for calcium-dependent protein kinase, complete cds Length = 1858 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 1372 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 1332
>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete sequence. Sequence from clones T23A1, F5J6, MJB20 Length = 76170 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 19787 agctcatcaatggtgatgtaaccacttccatctttgtcaaa 19747
>gb|AY810794.1| Schistosoma japonicum SJCHGC00574 protein mRNA, partial cds Length = 1003 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 529 atgaatccacttccatccttgtcaaa 554 ||||||||| |||||||||||||||| Sbjct: 274 atgaatccatttccatccttgtcaaa 249
>gb|AY030280.1| Psophocarpus tetragonolobus calcium-dependent protein kinase mRNA, partial cds Length = 1041 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 535 ccacttccatccttgtcaaaaaacgagaatgctgacaccaagttctcctccctctctagt 594 ||||| ||||||||||||||| | ||||| ||||| |||| ||| || || ||||| ||| Sbjct: 926 ccactaccatccttgtcaaaataggagaaggctgagaccaggttttcttctctctccagt 867 Query: 595 tt 596 || Sbjct: 866 tt 865
>gb|AY815603.1| Schistosoma japonicum clone SJCHGC00572 unknown mRNA Length = 995 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 529 atgaatccacttccatccttgtcaaa 554 ||||||||| |||||||||||||||| Sbjct: 376 atgaatccatttccatccttgtcaaa 351
>ref|NM_103271.2| Arabidopsis thaliana ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calcium- and calmodulin-dependent protein kinase/ kinase AT1G35670 (ATCDPK2) mRNA, complete cds Length = 1756 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 1346 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 1287 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 1286 agattctcctctctctc 1270
>gb|AY704444.1| Triticum aestivum calcium-dependent protein kinase 2 (CDPK2) mRNA, complete cds Length = 1677 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 526 gtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacca 574 |||||| | ||||||||||| ||||||||| |||| || |||| ||||| Sbjct: 1466 gtgatgtaaccacttccatctttgtcaaaatacgaaaaggctgccacca 1418
>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence Length = 159703 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 atggcatttctcctccccatg 300 ||||||||||||||||||||| Sbjct: 20274 atggcatttctcctccccatg 20294
>gb|AY295081.1| Capsicum annuum calcium-dependent protein kinase 3 mRNA, complete cds Length = 2185 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 535 ccacttccatccttgtcaaaa 555 ||||||||||||||||||||| Sbjct: 1512 ccacttccatccttgtcaaaa 1492
>emb|Y15964.1|ATY15964 Arabidopsis thaliana partial ORF1 for ATCDPK2-like protein and RPL21 gene for chloroplast ribosomal protein L21 Length = 5554 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 304 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 245 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 244 agattctcctctctctc 228
>gb|AY113986.1| Arabidopsis thaliana putative calcium-dependent protein kinase (At1g35670) mRNA, complete cds Length = 1519 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 1271 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 1212 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 1211 agattctcctctctctc 1195
>gb|AY050981.1| Arabidopsis thaliana putative calcium-dependent protein kinase (At1g35670) mRNA, complete cds Length = 1750 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 1346 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 1287 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 1286 agattctcctctctctc 1270
>gb|DQ071550.1| Brassica rapa subsp. pekinensis putative calcium dependent kinase 6 mRNA, partial cds Length = 1614 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaa 554 |||||||| ||||||||| | ||||||||||| || ||||| Sbjct: 1446 agctcatcaatggtgatgtaaccacttccatctttatcaaa 1406
>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence Length = 228486 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 atggcatttctcctccccatg 300 ||||||||||||||||||||| Sbjct: 35893 atggcatttctcctccccatg 35913
>dbj|AK221849.1| Arabidopsis thaliana mRNA for calcium-dependent protein kinase, complete cds, clone: RAFL22-06-J07 Length = 712 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 292 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 233 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 232 agattctcctctctctc 216
>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete sequence Length = 209923 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 atggcatttctcctccccatg 300 ||||||||||||||||||||| Sbjct: 8194 atggcatttctcctccccatg 8174
>emb|BX815752.1|CNS0ABCJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZB07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1683 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| || ||||| || |||||||| |||||||||| | |||| Sbjct: 1341 agctcatcgatggtgatatgaccgcttccgtctttgtcaaagtacgagaatgcagccacc 1282 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 1281 agattctcctctctctc 1265
>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence Length = 158096 Score = 42.1 bits (21), Expect = 2.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 514 agctcatcgatggtgatgaatccacttccatccttgtcaaaaaacgagaatgctgacacc 573 ||||||||||||||||| | || ||||| || |||||||| |||| ||||| | |||| Sbjct: 11832 agctcatcgatggtgatataaccgcttccgtctttgtcaaagtacgaaaatgcagccacc 11891 Query: 574 aagttctcctccctctc 590 | |||||||| ||||| Sbjct: 11892 agattctcctctctctc 11908
>gb|AC171726.1| Lycopersicon esculentum chromosome 01 clone C01HBa0088L02, complete sequence Length = 120525 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 535 ccacttccatccttgtcaaaa 555 ||||||||||||||||||||| Sbjct: 42533 ccacttccatccttgtcaaaa 42513
>gb|AC104317.2| Homo sapiens chromosome 8 clone RP11-383J24 map q24.13, complete sequence Length = 198700 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tggtgatgaatccacttcca 543 |||||||||||||||||||| Sbjct: 51513 tggtgatgaatccacttcca 51494
>gb|AC126246.3| Mus musculus BAC clone RP24-354D18 from chromosome 17, complete sequence Length = 168278 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 accaagttctcctccctctc 590 |||||||||||||||||||| Sbjct: 91866 accaagttctcctccctctc 91847
>gb|AF067209.2| Caenorhabditis elegans cosmid B0344, complete sequence Length = 41869 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 agtggagcaagttgaggtgc 32 |||||||||||||||||||| Sbjct: 12756 agtggagcaagttgaggtgc 12737
>emb|BX901978.14| Zebrafish DNA sequence from clone DKEY-155M6 in linkage group 18, complete sequence Length = 168101 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 tggcatttctcctccccatgccaa 304 ||||||||||||||||||| |||| Sbjct: 65308 tggcatttctcctccccataccaa 65285
>gb|AC087348.6| Homo sapiens chromosome 8, clone RP11-333H13, complete sequence Length = 173380 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccatctatctcccttcccct 216 |||||||||||||||||||| Sbjct: 159706 ccatctatctcccttcccct 159687
>gb|DQ399023.1| Ictalurus punctatus clone SRA06 calmodulin 1 mRNA, partial cds Length = 326 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 527 tgatgaatccacttccatccttgtcaaa 554 ||||| ||||| |||||||||||||||| Sbjct: 202 tgatgtatccatttccatccttgtcaaa 175
>ref|NM_075897.2| Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-9) (wrt-9) mRNA, complete cds Length = 1662 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 agtggagcaagttgaggtgc 32 |||||||||||||||||||| Sbjct: 1184 agtggagcaagttgaggtgc 1165
>gb|AC090192.19| Homo sapiens chromosome 8, clone RP11-383J24, complete sequence Length = 198899 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tggtgatgaatccacttcca 543 |||||||||||||||||||| Sbjct: 51710 tggtgatgaatccacttcca 51691
>emb|BX465846.14| Zebrafish DNA sequence from clone CH211-215B21 in linkage group 18, complete sequence Length = 109342 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 tggcatttctcctccccatgccaa 304 ||||||||||||||||||| |||| Sbjct: 65985 tggcatttctcctccccataccaa 66008
>gb|AY111373.1| Zea mays CL8993_1 mRNA sequence Length = 594 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ccgtcattgttctgatcgac 452 |||||||||||||||||||| Sbjct: 389 ccgtcattgttctgatcgac 408
>emb|AL603787.8| Mouse DNA sequence from clone RP23-169J19 on chromosome 11 Contains the 3' end of a novel gene, the gene for a novel protein similar to nascent polypeptide-associated complex alpha polypeptide Naca, the Tbrg4 gene for transforming growth factor beta regulated gene 4, the Wap gene for whey acidic protein, an ethanol induced 6 (Etohi6) pseudogene, two novel genes, the Ramp3 gene for receptor (calcitonin) activity modifying protein 3, a lactate dehydrogenase 1 A chain (Ldh1) pseudogene, a mitochondrial ribosomal protein L36 (Mrpl36) pseudogene, a retinoblastoma binding protein 5 (Rbbp5) pseudogene, a ribosomal protein L7A (Rpl7a) pseudogene and two CpG islands, complete sequence Length = 225879 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 tgctgacaccaagttctcct 583 |||||||||||||||||||| Sbjct: 77793 tgctgacaccaagttctcct 77774
>gb|AC153418.1| Mus musculus BAC clone RP23-437E18 from 17, complete sequence Length = 211386 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 accaagttctcctccctctc 590 |||||||||||||||||||| Sbjct: 42530 accaagttctcctccctctc 42549
>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete sequence Length = 187977 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 accaagttctcctccctctc 590 |||||||||||||||||||| Sbjct: 177222 accaagttctcctccctctc 177241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,406,521 Number of Sequences: 3902068 Number of extensions: 5406521 Number of successful extensions: 97171 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 96946 Number of HSP's gapped (non-prelim): 218 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
