ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V014_FOWPV (Q9J5I7) Putative ankyrin repeat protein FPV014 28 6.7
2LRC8C_RAT (Q498T9) Leucine-rich repeat-containing protein 8C 28 8.7
3LRC8C_MOUSE (Q8R502) Leucine-rich repeat-containing protein 8C (... 28 8.7
4LRC8C_HUMAN (Q8TDW0) Leucine-rich repeat-containing protein 8C (... 28 8.7

>V014_FOWPV (Q9J5I7) Putative ankyrin repeat protein FPV014|
          Length = 437

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 91  RRSL*RCCMSTDDMYVAKCIVCL 23
           RRSL   C++ DD  +AKC+ C+
Sbjct: 341 RRSLLDLCLNCDDNAIAKCLNCI 363



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>LRC8C_RAT (Q498T9) Leucine-rich repeat-containing protein 8C|
          Length = 803

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 85  IAFILFAS*LDI--NHYHILPPFLNTC 159
           I  +LF S LDI  NH+ +LPP L  C
Sbjct: 748 IGNLLFLSYLDIKGNHFEVLPPELGDC 774



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>LRC8C_MOUSE (Q8R502) Leucine-rich repeat-containing protein 8C (Protein AD158)|
          Length = 803

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 85  IAFILFAS*LDI--NHYHILPPFLNTC 159
           I  +LF S LDI  NH+ +LPP L  C
Sbjct: 748 IGNLLFLSYLDIKGNHFEVLPPELGDC 774



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>LRC8C_HUMAN (Q8TDW0) Leucine-rich repeat-containing protein 8C (Protein AD158)|
          Length = 803

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 85  IAFILFAS*LDI--NHYHILPPFLNTC 159
           I  +LF S LD+  NH+ ILPP L  C
Sbjct: 748 IGNLLFLSYLDVKGNHFEILPPELGDC 774


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,574,885
Number of Sequences: 219361
Number of extensions: 354883
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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