>RA6I1_HUMAN (Q6IQ26) Rab6-interacting protein 1 (Rab6IP1)|
          Length = 1287

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = +2

Query: 152  LNPMIVNVLRTLPPTYDNLWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVRQILEGQDWEQ 331
            L  ++V  L T  P  D      PP + +   I  L  + P+N  K+   QI E      
Sbjct: 1057 LERILVGELLTSQPEVDERPCRTPPLQQSPSVIRRLVTISPNNKPKLNTGQIQESIGEAV 1116

Query: 332  TSLVRHHFFPSRHRLSRT 385
              +V+H   P + R S T
Sbjct: 1117 NGIVKHFHKPEKERGSLT 1134

>RA6I1_MOUSE (Q6PAL8) Rab6-interacting protein 1 (Rab6IP1)|
          Length = 1287

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = +2

Query: 152  LNPMIVNVLRTLPPTYDNLWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVRQILEGQDWEQ 331
            L  ++V  L T  P  D      PP + +   I  L  + P+N  K+   QI E      
Sbjct: 1057 LERVLVGELLTSLPEVDERPCRTPPLQQSPSVIRRLVTISPNNKPKLNTGQIQESIGEAV 1116

Query: 332  TSLVRHHFFPSRHRLSRT 385
              +V+H   P + R S T
Sbjct: 1117 NGIVKHFHKPEKERGSLT 1134

>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3473

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 210 GVRCLHQKRMLGKSTLYRNYC 272
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>ABR18_PEA (Q06930) ABA-responsive protein ABR18|
          Length = 158

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 194 TYDN-LWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVRQILEG 316
           TY+N   S++PP K     +H    ++P  V  IK  +ILEG
Sbjct: 5   TYENDTTSTVPPAKLFKAVVHDADLIVPKVVDSIKTVEILEG 46

>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 210 GVRCLHQKRMLGKSTLYRNYC 272
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>MURG_RICTY (Q68WW7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 385

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -1

Query: 333 VCSQSCPSRIWRTFI------FLTLEGNNFCRGWIFPTFVFGG 223
           + SQ CP+++ +T +      F+    N F    IF  F+FGG
Sbjct: 172 LASQHCPTKLTKTVLTNTLNHFVKARNNKFSNCNIFTLFIFGG 214

>HM2L1_HUMAN (Q9UGU5) High mobility group protein 2-like 1 (HMGBCG protein)|
          Length = 601

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 50  HQQDKLDHNLSRIRGQCI*GKLPSNDSGHILELKLNPMIVN 172
           H + K +H+  ++ G    G+LP  D G     K+ P+ VN
Sbjct: 140 HSESKKEHHRKKVSGSS--GELPLEDGGSHKSKKMKPLYVN 178

>RBL_METMA (Q8PXG9) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 428

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 71  HNLSRIRGQCI*GKLPSNDSGHILELK---LNPMIVNVLRTLPPT 196
           H +  +R QC+  K+P+++S HIL      L PM       L PT
Sbjct: 316 HEVLNLRDQCVLDKVPADESQHILAQDWRGLKPMFPVASGGLAPT 360

>LEPA_AGRT5 (Q8UIQ2) GTP-binding protein lepA|
          Length = 608

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 185 LPPTYDNLWSSMPPPKTNVGKIHPLQKLL 271
           +P   + + + +PPPK++VG+  PL+ LL
Sbjct: 178 IPDVLEAIVNRLPPPKSDVGENGPLKALL 206

>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1469

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +2

Query: 125 DSGHILELKLNPMIVNVLRTLPPTYDNLWSSMPP---------PKTNVGKIHPLQKLLPS 277
           D   +  +K+N  + N+ + L PT  +L  ++PP          K        L K L  
Sbjct: 423 DLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGEYKAGTRITKELLKELFK 482

Query: 278 NVKKIKVRQILEGQ 319
           N K+IKV+   E +
Sbjct: 483 NYKEIKVKDYTEDE 496

>E41LA_MOUSE (P52963) Band 4.1-like protein 4A (NBL4 protein)|
          Length = 554

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 148 QTQPYDSKCFENAAANLRQPLEFDASTKNECWENPPSTEIIA------FQR*KDKSSPDP 309
           QTQP  S       AN             E  EN  +T+IIA      F++ K+++SPDP
Sbjct: 356 QTQPTGSNNINRITAN------------TENGENEGTTKIIAPSPVKSFKKAKNENSPDP 403

Query: 310 RRA 318
           +R+
Sbjct: 404 QRS 406

>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 353 NDDEQEKSVPSPALRGSGELLSF*RWKAIISVEGGFSQHSFLVEASNSR 207
           N  ++  S+P  +L+G G+      W A  S+    SQHS LV  +N +
Sbjct: 350 NFQKRVASLPYASLKGIGQ-----PWDAFRSISYNPSQHSVLVNEANGK 393

>LV4D_HUMAN (P01718) Ig lambda chain V-IV region Kern|
          Length = 106

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 276 EGNNFCRGWIFPTFVFGGGIELQRLS 199
           E + FC+ W   T +FGGG +L  LS
Sbjct: 81  EADYFCQTWDTITAIFGGGTKLTVLS 106

>SYFB_BACSU (P17922) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 804

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 197 YDNLWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVRQILEGQDWEQ 331
           YDN+ S++P      G + P Q       K+ KVR+ LEG    Q
Sbjct: 479 YDNIPSTLPETAGTTGGLTPYQ------AKRRKVRRFLEGAGLSQ 517

>KV6A_MOUSE (P01675) Ig kappa chain V-VI region XRPC 44|
          Length = 107

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 264 FCRGWIFPTFVFGGGIELQ 208
           +C+ W +P + FGGG +L+
Sbjct: 86  YCQQWNYPLWTFGGGTKLE 104

>APOA4_MOUSE (P06728) Apolipoprotein A-IV precursor (Apo-AIV) (ApoA-IV)|
          Length = 395

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 140 LELKLNPMIVNVLRTLPPTYDNLWSSMPPPKTNV 241
           ++L+L P I  +  T+    DNL +SM P  TN+
Sbjct: 153 MKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNL 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,733,570
Number of Sequences: 219361
Number of extensions: 1217618
Number of successful extensions: 3525
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3524
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)