ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
2ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.021
3ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.021
4gb|BT016455.1| Zea mays clone Contig288 mRNA sequence 48 0.021
5emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide t... 48 0.021
6emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide tr... 48 0.021
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
8dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
9dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
10dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
11dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
12dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
13dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 48 0.021
14gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 42 1.3
15gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 42 1.3
16emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 1.3
17gb|BT016715.1| Zea mays clone Contig548 mRNA sequence 40 5.2
18emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chro... 40 5.2
19gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 5.2
20emb|AL158048.35| Human DNA sequence from clone RP5-963K15 on chr... 40 5.2
21emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide t... 40 5.2
22gb|AY109420.1| Zea mays CL2269_1 mRNA sequence 40 5.2
23gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 5.2
24dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.2 
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1249
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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1250
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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1341 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1291
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>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence
          Length = 1550

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||
Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttc 1232
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>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP
            translocase)
          Length = 1511

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||
Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttc 1217
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>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator
          Length = 2098

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||
Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttc 1885
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 144      aactcaaactcaaccctatgatagtaaa 171
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                   
Query: 338      cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
                ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 29843335 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 29843285
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 144   aactcaaactcaaccctatgatagtaaa 171
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                
Query: 338   cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
             ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 99680 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 99630
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 144 aactcaaactcaaccctatgatagtaaa 171
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 338 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
           ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 250
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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1250
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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1249
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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1340 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1290
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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 144  aactcaaactcaaccctatgatagtaaa 171
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 338  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||
Sbjct: 1287 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttc 1237
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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 328   acagacttctcttgttcgtcatcat 352
             ||||||||||||||||||| |||||
Sbjct: 10958 acagacttctcttgttcgttatcat 10982
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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   acagacttctcttgttcgtcatcat 352
             ||||||||||||||||||| |||||
Sbjct: 22002 acagacttctcttgttcgttatcat 21978
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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   ctggagttcgatgcctccacc 228
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504
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>gb|BT016715.1| Zea mays clone Contig548 mRNA sequence
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||
Sbjct: 1276 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttc 1225
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>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3
             Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the
             5'end of the ZNF157 gene for zinc finger protein 157
             (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene,
             complete sequence
          Length = 152659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    caacaggataaacaggaaca 40
             ||||||||||||||||||||
Sbjct: 31268 caacaggataaacaggaaca 31287
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    gttcgccagatcctcgaagg 315
              ||||||||||||||||||||
Sbjct: 991526 gttcgccagatcctcgaagg 991545
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>emb|AL158048.35| Human DNA sequence from clone RP5-963K15 on chromosome 1p36.21-36.33
             Contains the SLC2A5 gene for solute carrier family 2
             (facilitated glucose/fructose transporter) member 5, two
             novel genes and two CpG islands, complete sequence
          Length = 139111

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    caacaggataaacaggaaca 40
             ||||||||||||||||||||
Sbjct: 42542 caacaggataaacaggaaca 42561
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>emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide translocator (also called
            ADP/ATP translocase)
          Length = 1579

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||
Sbjct: 1275 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttc 1224
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>gb|AY109420.1| Zea mays CL2269_1 mRNA sequence
          Length = 1883

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 336  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttc 387
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||
Sbjct: 1292 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttc 1241
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>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    atgatagtaaatgttttgag 180
              ||||||||||||||||||||
Sbjct: 152272 atgatagtaaatgttttgag 152253
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   catactcgaactcaaactcaaccc 159
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,284,649
Number of Sequences: 3902068
Number of extensions: 3284649
Number of successful extensions: 67330
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 67262
Number of HSP's gapped (non-prelim): 58
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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