ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TXA1_ANDAU (Q4LCT3) Toxin-like peptide AaF1CA1 precursor 32 2.2
2FKBP3_ARATH (Q9SCY2) FKBP-type peptidyl-prolyl cis-trans isomera... 31 3.7
3S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125) 30 8.2
4PHOSP_HENDV (O55778) Phosphoprotein (Protein P) 30 8.2
5S23IP_MOUSE (Q6NZC7) SEC23-interacting protein 30 8.2

>TXA1_ANDAU (Q4LCT3) Toxin-like peptide AaF1CA1 precursor|
          Length = 80

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 627 YGFCSISRWLFHCWAEILEDKD 562
           YG+C    W F CW E LEDK+
Sbjct: 60  YGYC----WFFTCWCEYLEDKN 77



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>FKBP3_ARATH (Q9SCY2) FKBP-type peptidyl-prolyl cis-trans isomerase 3,|
           chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)
           (AtFKBP13) (FK506-binding protein 1)
          Length = 208

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 551 DMNYSRGRNMLNQLGLQNYEKNFKKGLLTDETLPLLNESALRDVNIPP 408
           D +Y+RG+ +  ++G+    K + +G+L  + +P +     R + IPP
Sbjct: 127 DSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPP 174



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>S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)|
          Length = 1000

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 521 LNQLGLQNYEKNFKKGLLTDETLPLLNESALRDVNIPPGPRLVILDHIKREPGLAK 354
           L  L L  Y   F+K  +  E+L +     L+++ IP GPR  I + ++ +    K
Sbjct: 653 LEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVEHKAAKLK 708



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>PHOSP_HENDV (O55778) Phosphoprotein (Protein P)|
          Length = 707

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 587 GQKFSKTKTHNEDMNYSRGRNMLNQLGLQNYE--KNFKKGLLTDETLPLLNESALRDVNI 414
           G++  KT   N ++    GRN+L Q  L +++  KNF+ G LTDE  P    + +RD  I
Sbjct: 582 GERKGKT---NPELKPVIGRNILEQQELFSFDNLKNFRDGSLTDE--PYGGVARIRDDLI 636

Query: 413 PP 408
            P
Sbjct: 637 LP 638



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>S23IP_MOUSE (Q6NZC7) SEC23-interacting protein|
          Length = 998

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 521 LNQLGLQNYEKNFKKGLLTDETLPLLNESALRDVNIPPGPRLVILDHIK 375
           L  L L +Y   F+K  +  E+L +     L+++ IP GPR  I + +K
Sbjct: 649 LEALSLFDYISTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVK 697


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,081,052
Number of Sequences: 219361
Number of extensions: 1660424
Number of successful extensions: 3773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3773
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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