>PSB7A_ARATH (O23710) Proteasome subunit beta type 7-A precursor (EC 3.4.25.1)|
           (Proteasome subunit beta type 2) (20S proteasome beta
           subunit B-1) (Proteasome component FA) (Proteasome
           component FB)
          Length = 273

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLKPEVAD- 111
           GSNVD+CVITKGN EYLRN+  PNPRT+VSSKGYSF K  TEVL TKIT L  + E+ + 
Sbjct: 209 GSNVDICVITKGNKEYLRNYMEPNPRTYVSSKGYSFTK-KTEVLLTKITPLLERVEITEV 267

Query: 110 GDAMEE 93
           G+AMEE
Sbjct: 268 GEAMEE 273

>PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor (EC 3.4.25.1)|
           (Proteasome subunit beta type 2) (20S proteasome beta
           subunit B-2) (Proteasome component FC)
          Length = 274

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLKPEVAD- 111
           GSNVD+CVITKG+ EYLRN+  PNPRT+VSSKGYSF K  TEVL TKIT L  + E+ + 
Sbjct: 209 GSNVDICVITKGHKEYLRNYMEPNPRTYVSSKGYSFTK-KTEVLLTKITPLLERVEIVEV 267

Query: 110 -GDAMEE 93
            G+AMEE
Sbjct: 268 AGEAMEE 274

>PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLK 126
           GSN+D+CVI+K   ++LR + +PN +     + Y   KG T VL+ K+T L+L+
Sbjct: 213 GSNIDLCVISKSKLDFLRPYSVPNKKGTRFGR-YRCEKGTTAVLTEKVTPLELE 265

>PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLK 126
           GSN+D+CVI+K   ++LR + +PN +     + Y   KG T VL+ KIT L+++
Sbjct: 213 GSNIDLCVISKNKLDFLRPYTVPNKKGTRLGR-YRCEKGTTAVLTEKITPLEIE 265

>PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLK 126
           GSN+D+CVI+K   ++LR   +PN +     + Y   KG T VL+ K+T L+++
Sbjct: 213 GSNIDLCVISKSKLDFLRPFSVPNKKGTRLGR-YRCEKGTTAVLTEKVTPLEIE 265

>PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4.25.1)|
           (Macropain subunit PUP1) (Proteinase YSCE subunit PUP1)
           (Multicatalytic endopeptidase complex subunit PUP1)
          Length = 261

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 287 GSNVDVCVITKG-NTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQL 135
           GSNVDVCV+  G + EYLRN+  PN R     K Y F +G T VL   I  +
Sbjct: 199 GSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVLKESIVNI 249

>PSB10_HUMAN (P40306) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)|
           (Proteasome MECl-1) (Macropain subunit MECl-1)
           (Multicatalytic endopeptidase complex subunit MECl-1)
          Length = 273

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKG-YSFNKGHTEVLSTKITQLKLKPEVAD 111
           G NVD CVITK   + LR   L +P   V   G Y F  G T VL+  +  L L+     
Sbjct: 209 GGNVDACVITKTGAKLLRT--LSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEET 266

Query: 110 GDAME 96
             AME
Sbjct: 267 VQAME 271

>PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)|
           (Proteasome MECl-1) (Macropain subunit MECl-1)
           (Multicatalytic endopeptidase complex subunit MECl-1)
          Length = 273

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKG-YSFNKGHTEVLSTKITQLKLKPEVAD 111
           G NVD CVIT G  +  R   L  P   V   G Y F  G T VL+ ++  L L+     
Sbjct: 209 GGNVDACVITAGGAKLQR--ALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLEET 266

Query: 110 GDAME 96
             AME
Sbjct: 267 VQAME 271

>UBP4_YEAST (P32571) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 4)
           (Ubiquitin-specific-processing protease 4)
           (Deubiquitinating enzyme 4) (Vacuole biogenesis protein
           SSV7)
          Length = 926

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 10  SRTSTEKKEEMAQILSMTACLNVSTQDHSSIASPSATSGFSFSCVIFVDNTSVCPLLKLY 189
           SRT+T K +   Q +SM   LN+++  HSS  S    S  S S    +D+T V P    +
Sbjct: 498 SRTATPKLQRFPQTISMN--LNMNSNGHSSATSTIQPSCLSLSNNDSLDHTDVTP-TSSH 554

Query: 190 PFELTKVLG---FGNSWFL 237
            ++L   +G    GNS ++
Sbjct: 555 NYDLDFAVGLENLGNSCYM 573

>PSB7_SCHPO (Q09841) Probable proteasome subunit beta type 7 precursor (EC|
           3.4.25.1)
          Length = 267

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 287 GSNVDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKI 144
           GSN D+ VI +      R +  PN R    SK Y++++G T VL   I
Sbjct: 205 GSNCDLVVIDEEKATPYRGYSKPNERATKQSK-YTYDRGTTAVLKEDI 251

>GPD_ASHGO (Q759G5) Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)|
          Length = 424

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
 Frame = -1

Query: 245 EYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQ-----------LKLKPEVADGDAM 99
           E L+ H  P  R     KG+S  K   ++LST I +             L PEVA G+  
Sbjct: 173 EQLKGHVKPGARAISCLKGFSVGKDGVQLLSTYIEEHLHIPCGALSGANLAPEVAKGNWS 232

Query: 98  E 96
           E
Sbjct: 233 E 233

>Y199_DEIRA (Q9RXV7) UPF0133 protein DR0199|
          Length = 96

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 149 KITQLKLKPEVADGDAME 96
           K+T LK+KPE  DGD +E
Sbjct: 46  KVTSLKIKPEAVDGDDVE 63

>CYSZ_PASHA (P72205) Protein cysZ homolog (Fragment)|
          Length = 86

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 278 VDVCVITKGNTEYLRNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLKPEVADGDAM 99
           V VC  T    +  RN  L N     S   Y+F K ++  LST+    ++ P V +GD  
Sbjct: 25  VAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTETRTGEVSPNVRNGDIR 84

Query: 98  EE 93
           ++
Sbjct: 85  KQ 86

>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 236  RNHELPNPRTFVSSKGYSFNKGHTEVLSTKITQLKLKPEVADGDA 102
            RN E+P     VS KG+S  + H+E     + +L   P+ A+  A
Sbjct: 1296 RNLEMPLSSESVSKKGHSRKRSHSERSLLDLEKLSKDPDTANTSA 1340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,226,535
Number of Sequences: 219361
Number of extensions: 720465
Number of successful extensions: 1887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)