| Clone Name | rbags22e14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N09, full insert sequence Length = 1195 Score = 200 bits (101), Expect = 2e-48 Identities = 197/229 (86%) Strand = Plus / Minus Query: 59 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 118 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 1067 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 1008 Query: 119 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 178 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 1007 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 948 Query: 179 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 238 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 947 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 888 Query: 239 agtactctgtattccccttggttatcacacaaacatccacgttgctgcc 287 |||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct: 887 agtactctgtcttccccttggtgattacgcaaacatccacattgctgcc 839
>dbj|AK058440.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F11, full insert sequence Length = 750 Score = 200 bits (101), Expect = 2e-48 Identities = 197/229 (86%) Strand = Plus / Minus Query: 59 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 118 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 634 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 575 Query: 119 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 178 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 574 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 515 Query: 179 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 238 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 514 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 455 Query: 239 agtactctgtattccccttggttatcacacaaacatccacgttgctgcc 287 |||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct: 454 agtactctgtcttccccttggtgattacgcaaacatccacattgctgcc 406
>dbj|AB026564.1| Oryza sativa (japonica cultivar-group) OsPBB1 mRNA for beta 2 subunit of 20S proteasome, complete cds Length = 1122 Score = 200 bits (101), Expect = 2e-48 Identities = 197/229 (86%) Strand = Plus / Minus Query: 59 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 118 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 960 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 901 Query: 119 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 178 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 900 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 841 Query: 179 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 238 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 840 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 781 Query: 239 agtactctgtattccccttggttatcacacaaacatccacgttgctgcc 287 |||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct: 780 agtactctgtcttccccttggtgattacgcaaacatccacattgctgcc 732
>ref|XM_476072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 147 bits (74), Expect = 2e-32 Identities = 167/198 (84%) Strand = Plus / Minus Query: 90 tcactcttccattgcatcaccatcagctacctctggcttcagcttcagctgcgtgatctt 149 |||||| |||||||||||||| || | |||||| |||| ||||||| || || ||||| Sbjct: 819 tcactcctccattgcatcaccctctgtcacctctaccttcggcttcagttgtgttatctt 760 Query: 150 tgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactgacaaaagt 209 ||| ||||| ||| | || ||||||||| ||||| |||| ||||| ||||| || |||| Sbjct: 759 tgtggacaacaccacagtctgccccttggtgaagttgtaccccttcgaactaacgtaagt 700 Query: 210 cctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggttatcacaca 269 ||| || |||||||||| ||||||||||||||||||||| ||||||||||| || || || Sbjct: 699 ccttggatttggtaactggtggtttctcaagtactctgtcttccccttggtgattacgca 640 Query: 270 aacatccacgttgctgcc 287 ||||||||| |||||||| Sbjct: 639 aacatccacattgctgcc 622
>gb|BT017621.1| Zea mays clone EL01N0435E12.c mRNA sequence Length = 1144 Score = 125 bits (63), Expect = 8e-26 Identities = 123/143 (86%) Strand = Plus / Minus Query: 142 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 201 |||| ||||| ||||| |||||| || ||||||||| |||| ||||||||||||||||| Sbjct: 866 gtgacctttgaagacagtacctcagtctgccccttggtgaaactgtatccctttgaacta 807 Query: 202 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 261 || ||||||| || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 806 gcataagtcctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 747 Query: 262 atcacacaaacatccacgttgct 284 ||||| || || ||||||||||| Sbjct: 746 atcacgcagacgtccacgttgct 724
>gb|AY110243.1| Zea mays CL2786_1 mRNA sequence Length = 1029 Score = 125 bits (63), Expect = 8e-26 Identities = 123/143 (86%) Strand = Plus / Plus Query: 142 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 201 |||||||||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| Sbjct: 467 gtgatctttgcggacaacacctcagtctgccccttggtgaagctatatccctttgaacta 526 Query: 202 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 261 ||| |||| || || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 527 acataagttctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 586 Query: 262 atcacacaaacatccacgttgct 284 ||||| || |||||||| ||||| Sbjct: 587 atcacgcagacatccacattgct 609
>gb|AY105052.1| Zea mays PCO138078 mRNA sequence Length = 1368 Score = 125 bits (63), Expect = 8e-26 Identities = 123/143 (86%) Strand = Plus / Minus Query: 142 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 201 |||| ||||| ||||| |||||| || ||||||||| |||| ||||||||||||||||| Sbjct: 960 gtgacctttgaagacagtacctcagtctgccccttggtgaaactgtatccctttgaacta 901 Query: 202 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 261 || ||||||| || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 900 gcataagtcctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 841 Query: 262 atcacacaaacatccacgttgct 284 ||||| || || ||||||||||| Sbjct: 840 atcacgcagacgtccacgttgct 818
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 7e-17 Identities = 87/100 (87%) Strand = Plus / Minus Query: 59 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 118 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 5280342 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 5280283 Query: 119 cctctggcttcagcttcagctgcgtgatctttgtagacaa 158 ||||| |||| ||||||| || || |||||||| ||||| Sbjct: 5280282 cctctaccttcggcttcagttgtgttatctttgtggacaa 5280243 Score = 87.7 bits (44), Expect = 2e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 169 tgccccttgttgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcg 228 ||||||||| ||||| |||| ||||| ||||| || ||||||| || |||||||||| | Sbjct: 5280147 tgccccttggtgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactgg 5280088 Query: 229 tggtttctcaagtactctgtattcccct 256 |||||||||||||||||||| ||||||| Sbjct: 5280087 tggtttctcaagtactctgtcttcccct 5280060
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 95.6 bits (48), Expect = 7e-17 Identities = 87/100 (87%) Strand = Plus / Minus Query: 59 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 118 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 17043 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 16984 Query: 119 cctctggcttcagcttcagctgcgtgatctttgtagacaa 158 ||||| |||| ||||||| || || |||||||| ||||| Sbjct: 16983 cctctaccttcggcttcagttgtgttatctttgtggacaa 16944 Score = 87.7 bits (44), Expect = 2e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 169 tgccccttgttgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcg 228 ||||||||| ||||| |||| ||||| ||||| || ||||||| || |||||||||| | Sbjct: 16848 tgccccttggtgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactgg 16789 Query: 229 tggtttctcaagtactctgtattcccct 256 |||||||||||||||||||| ||||||| Sbjct: 16788 tggtttctcaagtactctgtcttcccct 16761
>gb|AC150800.3| Medicago truncatula chromosome 7 BAC clone mth2-77m9, complete sequence Length = 116865 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 ccttggttatcacacaaacatc 275 |||||||||||||||||||||| Sbjct: 106030 ccttggttatcacacaaacatc 106051
>emb|BX890627.4| Zebrafish DNA sequence from clone DKEY-21E7 in linkage group 22, complete sequence Length = 57918 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 18 aagcactgagaaaaaagaagaaatgg 43 ||||||||| |||||||||||||||| Sbjct: 33366 aagcactgaaaaaaaagaagaaatgg 33341
>emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in linkage group 22, complete sequence Length = 155796 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 18 aagcactgagaaaaaagaagaaatgg 43 ||||||||| |||||||||||||||| Sbjct: 107650 aagcactgaaaaaaaagaagaaatgg 107675
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 gccccttgttgaagctgtatc 190 ||||||||||||||||||||| Sbjct: 2497372 gccccttgttgaagctgtatc 2497392
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 agaaatggcgcaaattctta 55 |||||||||||||||||||| Sbjct: 1001598 agaaatggcgcaaattctta 1001617
>gb|AY642984.1| Tripsacum dactyloides clone CentT9 centromeric repeat sequence Length = 157 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tgagaaaaaagaagaaatgg 43 |||||||||||||||||||| Sbjct: 148 tgagaaaaaagaagaaatgg 129
>gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome 7, complete sequence Length = 202934 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 catcagctacctctggcttcagct 133 ||||||||||||||||| |||||| Sbjct: 123045 catcagctacctctggcatcagct 123068
>gb|AC133177.3| Mus musculus BAC clone RP24-116D7 from chromosome 18, complete sequence Length = 185838 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ctagaacaagcactgagaaa 30 |||||||||||||||||||| Sbjct: 13938 ctagaacaagcactgagaaa 13919
>gb|AC140352.3| Mus musculus BAC clone RP23-223L7 from chromosome 18, complete sequence Length = 165504 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ctagaacaagcactgagaaa 30 |||||||||||||||||||| Sbjct: 150305 ctagaacaagcactgagaaa 150286
>emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 in linkage group 17, complete sequence Length = 198387 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cactgagaaaaaagaagaaatggc 44 |||||||||| ||||||||||||| Sbjct: 49849 cactgagaaataagaagaaatggc 49826
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 agaaatggcgcaaattctta 55 |||||||||||||||||||| Sbjct: 1134799 agaaatggcgcaaattctta 1134818
>gb|AC010070.8| Drosophila melanogaster 3L BAC RP98-18E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171622 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcttcagcttcagctgc 141 |||||||||||||||||||| Sbjct: 96939 ctggcttcagcttcagctgc 96958
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggcttcagcttcagctgcgt 143 |||||||||||||||||||| Sbjct: 145850 ggcttcagcttcagctgcgt 145831
>ref|NM_139415.1| Drosophila melanogaster CG13924-RA (CG13924), mRNA Length = 1485 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggcttcagcttcagctgcgt 143 |||||||||||||||||||| Sbjct: 290 ggcttcagcttcagctgcgt 271
>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone BACR30G21, complete sequence Length = 168370 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctctggcttcagcttcagct 139 |||||||||||||||||||| Sbjct: 36068 ctctggcttcagcttcagct 36049
>emb|Y08571.1|NVY08571 N.vacuolatum gvpA, gvpC, gvpN, gvpO, gvpF, gvpG and gvpH genes Length = 5110 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgagaaaaaagaagaaatgg 43 |||||||||||||||||||| Sbjct: 439 tgagaaaaaagaagaaatgg 458
>gb|AY104327.1| Zea mays PCO078604 mRNA sequence Length = 1960 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tccattgcatcaccatcagc 116 |||||||||||||||||||| Sbjct: 1469 tccattgcatcaccatcagc 1450
>emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in linkage group 17, complete sequence Length = 232846 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 cactgagaaaaaagaagaaatggc 44 |||||||||| ||||||||||||| Sbjct: 152867 cactgagaaataagaagaaatggc 152890
>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete sequence Length = 308447 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctctggcttcagcttcagct 139 |||||||||||||||||||| Sbjct: 73191 ctctggcttcagcttcagct 73172
>gb|AE003525.4| Drosophila melanogaster chromosome 3L, section 60 of 83 of the complete sequence Length = 196398 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcttcagcttcagctgc 141 |||||||||||||||||||| Sbjct: 107603 ctggcttcagcttcagctgc 107622
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggcttcagcttcagctgcgt 143 |||||||||||||||||||| Sbjct: 32540 ggcttcagcttcagctgcgt 32521
>gb|AC004713.1|AC004713 Drosophila melanogaster, chromosome 3L, region 62B8-62B11, P1 clone DS04710, complete sequence Length = 72327 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggcttcagcttcagctgcgt 143 |||||||||||||||||||| Sbjct: 4064 ggcttcagcttcagctgcgt 4045
>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete sequence Length = 79454 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctctggcttcagcttcagct 139 |||||||||||||||||||| Sbjct: 40545 ctctggcttcagcttcagct 40526
>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence Length = 205543 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 catcagctacctctggcttcagct 133 ||||||||||||||||| |||||| Sbjct: 183500 catcagctacctctggcatcagct 183523
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 ctgttctagaacaagcactgagaa 29 |||||||||||||| ||||||||| Sbjct: 67173 ctgttctagaacaatcactgagaa 67150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,201,299 Number of Sequences: 3902068 Number of extensions: 3201299 Number of successful extensions: 75887 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75721 Number of HSP's gapped (non-prelim): 166 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)