ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
2dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
3dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
5ref|NM_192811.1| Oryza sativa (japonica cultivar-group), predic... 64 3e-07
6gb|AY105958.1| Zea mays PCO114043 mRNA sequence 60 4e-06
7ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/1... 44 0.25
8emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.25
9gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, comple... 42 0.98
10gb|AY109071.1| Zea mays PCO122073 mRNA sequence 42 0.98
11gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 42 0.98
12gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 3.9
13ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin reco... 40 3.9
14ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical pro... 40 3.9
15gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 40 3.9
16gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Canc... 40 3.9
17dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 40 3.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                            
Query: 178      ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 237
                |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 24575936 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 24575995

                                                    
Query: 238      tatattgccttccaccggccacatcttcttcgcgta 273
                |||| || |||||||| || ||||||||||||||||
Sbjct: 24575996 tatactgtcttccaccagcgacatcttcttcgcgta 24576031
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                        
Query: 178  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 237
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1899 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1958

                                                
Query: 238  tatattgccttccaccggccacatcttcttcgcgta 273
            |||| || |||||||| || ||||||||||||||||
Sbjct: 1959 tatactgtcttccaccagcgacatcttcttcgcgta 1994
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                          
Query: 178    ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 237
              |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 156320 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 156379

                                                  
Query: 238    tatattgccttccaccggccacatcttcttcgcgta 273
              |||| || |||||||| || ||||||||||||||||
Sbjct: 156380 tatactgtcttccaccagcgacatcttcttcgcgta 156415
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>dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N11, full
            insert sequence
          Length = 1327

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 178  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 237
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1149 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1090

                                                
Query: 238  tatattgccttccaccggccacatcttcttcgcgta 273
            |||| || |||||||| || ||||||||||||||||
Sbjct: 1089 tatactgtcttccaccagcgacatcttcttcgcgta 1054
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>ref|NM_192811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190 acttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttc 249
           ||||||| ||||| || ||||| ||||||||| | |  |||||||| ||||| || ||||
Sbjct: 886 acttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgaggtatactgtcttc 827

                                   
Query: 250 caccggccacatcttcttcgcgta 273
           |||| || ||||||||||||||||
Sbjct: 826 caccagcgacatcttcttcgcgta 803
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>gb|AY105958.1| Zea mays PCO114043 mRNA sequence
          Length = 1434

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                        
Query: 191  cttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttcc 250
            |||||| |||||||| || || |||||||||   |  |||||||||||  |||| |||||
Sbjct: 1115 cttctttggcgtatcagcgtacttccaggtggtatgtgcaaatgaagtgaattgtcttcc 1056

                                      
Query: 251  accggccacatcttcttcgcgtatct 276
            ||| |||||||||||||| |||||||
Sbjct: 1055 accagccacatcttcttcccgtatct 1030
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>ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/130) (FYB), mRNA
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 160  atcactgtctccacaatctttt 181
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clone 32b13
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 160  atcactgtctccacaatctttt 181
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence
          Length = 183554

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 246    cttccaccggccacatcttct 266
              |||||||||||||||||||||
Sbjct: 138871 cttccaccggccacatcttct 138851
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>gb|AY109071.1| Zea mays PCO122073 mRNA sequence
          Length = 1331

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 240  tattgccttccaccggccacatcttcttcgcgtatct 276
            ||||| |||||||| |||||||||||| | |||||||
Sbjct: 1123 tattgtcttccaccagccacatcttctgcacgtatct 1087
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    cttccaccggccacatcttct 266
              |||||||||||||||||||||
Sbjct: 151824 cttccaccggccacatcttct 151844
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   cacaatcttttttagtttca 190
             ||||||||||||||||||||
Sbjct: 33342 cacaatcttttttagtttca 33361
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>ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin recognition complex
           subunit 2 (PY03235) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gacaattcacaagatgaaga 102
           ||||||||||||||||||||
Sbjct: 106 gacaattcacaagatgaaga 125
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>ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical protein (PB000518.03.0)
            partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   gacaattcacaagatgaaga 102
            ||||||||||||||||||||
Sbjct: 1078 gacaattcacaagatgaaga 1097
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     acaagatgaagatacaggga 110
              ||||||||||||||||||||
Sbjct: 123845 acaagatgaagatacaggga 123864
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>gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144820

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    agatgaagatacagggagca 113
             ||||||||||||||||||||
Sbjct: 64196 agatgaagatacagggagca 64177
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acaagatgaagatacaggga 110
             ||||||||||||||||||||
Sbjct: 80102 acaagatgaagatacaggga 80121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,742,843
Number of Sequences: 3902068
Number of extensions: 2742843
Number of successful extensions: 51498
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51459
Number of HSP's gapped (non-prelim): 39
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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