ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22e04 |
|---|---|
| Clone Library Name | barley_pub |
>Y1367_METJA (Q58762) Hypothetical ABC transporter ATP-binding protein MJ1367| Length = 297 Score = 34.3 bits (77), Expect = 0.34 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = -1 Query: 541 PVGHITKTFAQAVRLGEAKSVSPSGEKASAGDSSVAAKPVEVK 413 PV HIT A+A LGE + +GE + GD S+ KP K Sbjct: 179 PVLHITHDLAEARTLGEKVGIFMNGELIAFGDKSILKKPKNKK 221
>RBBP5_HUMAN (Q15291) Retinoblastoma-binding protein 5 (RBBP-5)| (Retinoblastoma-binding protein RBQ-3) Length = 538 Score = 33.1 bits (74), Expect = 0.76 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 50 KTAALNLNLLPTEELITILNAKGNGDGKRKVHKRPKG 160 KT + L +P +E+ +L KG+G K+K RPKG Sbjct: 453 KTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKG 489
>ECAP_LYCES (Q42883) Calcium-transporting ATPase, endoplasmic reticulum-type (EC| 3.6.3.8) Length = 1048 Score = 32.7 bits (73), Expect = 0.99 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +3 Query: 438 TDESPAEA--FSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLGSTTLGVLVIWPTR 611 TD PA A F+P + ++ P R ++ W + ++G T+G+ ++W T+ Sbjct: 825 TDGPPATALGFNPADVDIMQKPPRKNTDALINSWVFFRYMVIGSYVGIATVGIFIVWYTQ 884 Query: 612 VS 617 S Sbjct: 885 AS 886
>ECA2_ARATH (O23087) Calcium-transporting ATPase 2, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 1054 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +3 Query: 438 TDESPAEA--FSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLGSTTLGVLVIWPTR 611 TD PA A F+P + ++ P R + ++ W + ++G T+G+ V+W T+ Sbjct: 824 TDGPPATALGFNPADIDIMKKPPRKSDDCLIDSWVLIRYLVIGSYVGVATVGIFVLWYTQ 883 Query: 612 VS 617 S Sbjct: 884 AS 885
>ECA1_ARATH (P92939) Calcium-transporting ATPase 1, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 1061 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3 Query: 438 TDESPAEA--FSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLGSTTLGVLVIWPTR 611 TD PA A F+P ++ P R + ++ W + ++G T+GV +IW T Sbjct: 828 TDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTH 887 Query: 612 VS 617 S Sbjct: 888 SS 889
>NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1265 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = -1 Query: 601 HITKTPSVVEPKKPSTVPTDPVGHITKTFAQAVRLGEAKSVS---PSGEKASAGDSSVA 434 H+T +PS P PST+ P +T + + RL A +S G+ +AG+S A Sbjct: 1003 HVTSSPSSPSPPAPSTIKLTPEMKPAETSSSSFRLMPALGISVAEQKGKVVTAGESKPA 1061
>ECA4_ARATH (Q9XES1) Calcium-transporting ATPase 4, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 1061 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3 Query: 438 TDESPAEA--FSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLGSTTLGVLVIWPTR 611 TD PA A F+P ++ P R + ++ W + ++G T+GV +IW T Sbjct: 828 TDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTH 887 Query: 612 VS 617 S Sbjct: 888 NS 889
>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)| Length = 607 Score = 31.6 bits (70), Expect = 2.2 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Frame = +3 Query: 291 SPASSYIFWRWHRMSLCTQLSDEEAHGLNFNHSRIQLQLLSF-TSTGLAATDESPAEAFS 467 SP YI + T + + ++ HS L +F TS LAA SP + S Sbjct: 493 SPQLQYIMPSPSSNAFATNQTHQGSYNTFRLHSPCALYGYNFSTSPKLAA---SPEKIVS 549 Query: 468 PEGLTLLASPSRTACAKVLVIWPTG----SVGTVEGFLGSTTLGVLVIWPTRVSGH 623 +G L +SPS T + ++ G S G + F S TLG L + ++VS H Sbjct: 550 SQGSFLGSSPSGTMTDRQMLPPVEGVHLLSSGGQQSFFDSRTLGSLTLSSSQVSAH 605
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +3 Query: 402 QLLSFTSTGL--AATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 +LLS G A ++ A+ FS GL L +PS +L IW T + G VEG+ Sbjct: 120 ELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGY 178
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 104 LNAKGNGDGKRKVHKRPKGGGTNVRNYVLH*ASIHGW 214 +N+K NG+ K KV +R +GG +N +Y L +GW Sbjct: 213 MNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGW 249
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 104 LNAKGNGDGKRKVHKRPKGGGTNVRNYVLH*ASIHGW 214 +N+K NG+ K KV +R +GG +N +Y L +GW Sbjct: 215 MNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGW 251
>AT2A1_RABIT (P04191) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 1001 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>AT2A1_HUMAN (O14983) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 1001 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>ATC1_ANOGA (Q7PPA5) Calcium-transporting ATPase sarcoplasmic/endoplasmic| reticulum type (EC 3.6.3.8) (Calcium pump) Length = 1018 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R A ++ W + G++G Sbjct: 789 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMTKPPRKADEGLISGWLFFRYMAIGGYVG 844 Query: 573 STTLGVLVIW 602 T+G W Sbjct: 845 CATVGGAAWW 854
>AT2A1_MAKNI (P70083) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 996 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 787 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMGKPPRSPKEPLISGWLFFRYMAIGGYVG 842 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 843 AATVGGAAWW 852
>AT2A1_RAT (Q64578) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum class Length = 994 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>AT2A1_RANES (Q92105) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 994 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>AT2A1_MOUSE (Q8R429) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 994 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>AT2A1_CHICK (P13585) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 994 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R+ ++ W + G++G Sbjct: 790 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMDKPPRSPKEPLISGWLFFRYLAIGGYVG 845 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 846 AATVGAAAWW 855
>TBX18_MOUSE (Q9EPZ6) T-box transcription factor TBX18 (T-box protein 18)| Length = 613 Score = 30.4 bits (67), Expect = 4.9 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Frame = +3 Query: 360 EAHGLNFN----HSRIQLQLLSF-TSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVL 524 + H ++N HS L +F TS LAA SP + S +G L +SPS T + + Sbjct: 518 QTHQSSYNTFRLHSPCALYGYNFSTSPKLAA---SPEKIVSSQGSFLGSSPSGTMTDRQM 574 Query: 525 VIWPTG----SVGTVEGFLGSTTLGVLVIWPTRVSGH 623 + G S G + F S TLG L + ++VS H Sbjct: 575 LPPVEGVHLLSSGGQQSFFDSRTLGSLTLPSSQVSAH 611
>MTGA_PSEAE (Q9I6B7) Monofunctional biosynthetic peptidoglycan transglycosylase| (EC 2.4.2.-) (Monofunctional TGase) Length = 232 Score = 30.4 bits (67), Expect = 4.9 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 457 RLSRQKGSRSWPRQAAQPVQRSW*YGPPGQWVRSRASWARQR 582 RLSR + S+ A P W PG +VR RA+W RQ+ Sbjct: 179 RLSRTQASQL---AAVLPSPLKWSAARPGPYVRQRAAWIRQQ 217
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 89 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 137
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 174
>ATI3_VACCV (P21117) Putative A-type inclusion protein (Protein A25) (ATI)| Length = 209 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -1 Query: 661 PAPVFLSPRSRRLCPLTLVGHITKTPSVVEPKKPSTVPTDPVGHITKTF 515 P P + PR + + PLT T+ VE PST T+P+ +T ++ Sbjct: 101 PLPNYTFPRIKNVSPLT-----TEATGSVEVAPPSTDVTEPISDVTPSW 144
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 129 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 177
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 127 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 175
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 127 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 175
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 130 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 178
>ATI2_VACCC (P21114) Putative A-type inclusion protein (Protein A26) (ATI)| Length = 322 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 661 PAPVFLSPRSRRLCPLTLVGHITKTPSVVEPKKPSTVPTDPVGHIT 524 P P + PR + + PLT T+ VE PST T+P+ +T Sbjct: 269 PLPNYTFPRIKNVSPLT-----TEATGSVEVAPPSTDVTEPISDVT 309
>ATC_ARTSF (P35316) Calcium-transporting ATPase sarcoplasmic/endoplasmic| reticulum type (EC 3.6.3.8) (Calcium pump) Length = 1003 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +3 Query: 393 IQLQLLSFTSTGLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSVGTVEGFLG 572 +QL ++ + GL AT A F+P L ++ P R A ++ W + ++G Sbjct: 794 VQLLWVNLVTDGLPAT----ALGFNPPDLDIMNKPPRRADEGLITGWLFFRYMAIGTYVG 849 Query: 573 STTLGVLVIW 602 + T+G W Sbjct: 850 AATVGAAAHW 859
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 117 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGY 165
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 426 GLAATDESPAEAFSPEGLTLLASPSRTACAKVLVIWPTGSV--GTVEGF 566 G A ++ ++ FS GL L +PS +L IW T + G VEG+ Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGY 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,609,884 Number of Sequences: 219361 Number of extensions: 2427273 Number of successful extensions: 6755 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 6319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6750 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
