ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017567.1| Zea mays clone EL01N0426C03.c mRNA sequence 90 1e-14
2ref|XM_483734.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-05
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
4dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
5dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
6dbj|AK104837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
7dbj|AK068463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
8emb|Z79999.2|HS111A3 Human DNA sequence from clone CITF22-111A3 ... 44 0.58
9gb|AC011276.12| Homo sapiens chromosome , clone RP11-13J17, comp... 44 0.58
10gb|AC116913.6| Homo sapiens chromosome 15, clone CTD-3185P2, com... 44 0.58
11gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12 44 0.58
12ref|NM_102094.2| Arabidopsis thaliana COX6B (CYTOCHROME C OXIDAS... 42 2.3
13gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosom... 42 2.3
14gb|AY096696.1| Arabidopsis thaliana putative cytochrome c oxidas... 42 2.3
15gb|AY063997.1| Arabidopsis thaliana putative cytochrome c oxidas... 42 2.3
16emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.3
17gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosom... 42 2.3
18gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 42 2.3
19ref|XM_392490.2| PREDICTED: Apis mellifera similar to apolipopho... 42 2.3
20gb|AY086483.1| Arabidopsis thaliana clone 25361 mRNA, complete s... 42 2.3
21dbj|AB035444.1| Arabidopsis thaliana mRNA for subunit 6b of cyto... 42 2.3
22ref|XM_527731.1| PREDICTED: Pan troglodytes similar to Tubulin g... 40 9.0
23gb|AC136150.4| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
24gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
25gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 40 9.0
26gb|BC001968.1| Homo sapiens cyclin-dependent kinase 9 (CDC2-rela... 40 9.0
27gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosom... 40 9.0
28gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, comp... 40 9.0
29gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosom... 40 9.0
30gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, c... 40 9.0
31gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosom... 40 9.0
32emb|AL162586.26| Human DNA sequence from clone RP11-228B15 on ch... 40 9.0
33emb|AL034550.31|HS1184F4 Human DNA sequence from clone RP5-1184F... 40 9.0
34emb|X80230.1|HSSTPKC2K H.sapiens mRNA (clone C-2k) mRNA for seri... 40 9.0
35emb|AL683873.14| Mouse DNA sequence from clone RP23-119G22 on ch... 40 9.0
36gb|AC155932.6| Mus musculus BAC clone RP23-85K13 from chromosome... 40 9.0
37emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 i... 40 9.0
38ref|NM_001261.2| Homo sapiens cyclin-dependent kinase 9 (CDC2-re... 40 9.0
39gb|AF517840.1| Homo sapiens cyclin-dependent kinase 9 (CDC2-rela... 40 9.0
40emb|CR618153.1| full-length cDNA clone CS0DA005YG17 of Neuroblas... 40 9.0
41ref|XM_689939.1| PREDICTED: Danio rerio similar to Tripartite mo... 40 9.0
42gb|AC111120.12| Mus musculus chromosome 7, clone RP23-225M4, com... 40 9.0
43gb|AC004985.2| Homo sapiens PAC clone RP5-1165K10 from 7, comple... 40 9.0
44gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer... 40 9.0
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
46gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) ge... 40 9.0
47gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 40 9.0
48gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer... 40 9.0
49gb|AC011442.5|AC011442 Homo sapiens chromosome 19 clone CTC-215O... 40 9.0
50gb|AF255306.1|AF255306 Homo sapiens protein kinase CDK9 (CDK9) g... 40 9.0
51emb|Z24009.1|HS282WG5 H. sapiens (D15S202) DNA segment containin... 40 9.0
52gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 9.0
53emb|Y14754.2|MMSTOPEX1 Mus musculus partial stop gene, exon 1 an... 40 9.0
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
55emb|Z99113.2|BSUB0010 Bacillus subtilis complete genome (section... 40 9.0
56gb|AC155250.1| Mus musculus BAC clone RP24-228F21 from 9, comple... 40 9.0
57gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, com... 40 9.0
58gb|BC050000.1| Mus musculus cDNA clone IMAGE:6466318 40 9.0
59emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chro... 40 9.0
60gb|AC152500.7| Mus musculus BAC clone RP24-555P14 from chromosom... 40 9.0 
>gb|BT017567.1| Zea mays clone EL01N0426C03.c mRNA sequence
          Length = 1373

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                       
Query: 484 tcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatggcccaccgggt 543
           |||||||||| ||||||||||||||||  |||||  |||||||||||||||||||  |||
Sbjct: 878 tcttggcctcaccaagccgcacagcctcagcaaaactcttggtgatatggcccacgaggt 819

                                                
Query: 544 cagtgggtacggtcgagggcttcttgggctcgacaac 580
           || ||||| | ||| |||| ||||||||||| |||||
Sbjct: 818 cactgggtgcagtcaagggtttcttgggctcaacaac 782



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 589 tcttggtgatatggcccaccagggtcagtgggcacagtcgacggcttcttgggctca 645
           ||||||||||||||||||| | ||||| ||||  ||||| | || ||||||||||||
Sbjct: 842 tcttggtgatatggcccacga-ggtcactgggtgcagtcaagggtttcttgggctca 787
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>ref|XM_483734.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2650

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                        
Query: 473  agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
            |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 2089 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 2030

                                                      
Query: 533  gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
             || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 2029 accaactagatcagtggccacagtcaagggcttcttgggctc 1988



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ggcttgcacaaaaactgcagc 60
            |||||||||||||||||||||
Sbjct: 2445 ggcttgcacaaaaactgcagc 2425



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 613  tcagtgggcacagtcgacggcttcttgggctca 645
            ||||||| ||||||| | |||||||||||||||
Sbjct: 2019 tcagtggccacagtcaagggcttcttgggctca 1987
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                            
Query: 473      agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
                |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 27818352 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 27818411

                                                          
Query: 533      gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
                 || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 27818412 accaactagatcagtggccacagtcaagggcttcttgggctc 27818453



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 613      tcagtgggcacagtcgacggcttcttgggctca 645
                ||||||| ||||||| | |||||||||||||||
Sbjct: 27818422 tcagtggccacagtcaagggcttcttgggctca 27818454



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 40       ggcttgcacaaaaactgcagc 60
                |||||||||||||||||||||
Sbjct: 27817996 ggcttgcacaaaaactgcagc 27818016
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>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0439B07
          Length = 89475

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                         
Query: 473   agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
             |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 72809 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 72868

                                                       
Query: 533   gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
              || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 72869 accaactagatcagtggccacagtcaagggcttcttgggctc 72910



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 613   tcagtgggcacagtcgacggcttcttgggctca 645
             ||||||| ||||||| | |||||||||||||||
Sbjct: 72879 tcagtggccacagtcaagggcttcttgggctca 72911



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    ggcttgcacaaaaactgcagc 60
             |||||||||||||||||||||
Sbjct: 72453 ggcttgcacaaaaactgcagc 72473
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                         
Query: 473   agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
             |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 26430 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 26489

                                                       
Query: 533   gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
              || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 26490 accaactagatcagtggccacagtcaagggcttcttgggctc 26531



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 613   tcagtgggcacagtcgacggcttcttgggctca 645
             ||||||| ||||||| | |||||||||||||||
Sbjct: 26500 tcagtggccacagtcaagggcttcttgggctca 26532



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    ggcttgcacaaaaactgcagc 60
             |||||||||||||||||||||
Sbjct: 26074 ggcttgcacaaaaactgcagc 26094
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>dbj|AK104837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D12, full
           insert sequence
          Length = 1345

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                       
Query: 473 agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
           |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 784 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 725

                                                     
Query: 533 gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
            || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 724 accaactagatcagtggccacagtcaagggcttcttgggctc 683



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ggcttgcacaaaaactgcagc 60
            |||||||||||||||||||||
Sbjct: 1140 ggcttgcacaaaaactgcagc 1120



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 613 tcagtgggcacagtcgacggcttcttgggctca 645
           ||||||| ||||||| | |||||||||||||||
Sbjct: 714 tcagtggccacagtcaagggcttcttgggctca 682
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>dbj|AK068463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153A10, full
            insert sequence
          Length = 2650

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                        
Query: 473  agggctcacgctcttggcctcgccaagccgcacagcctgtgcaaaggtcttggtgatatg 532
            |||||||||  |||||||||| |||||||| || ||||| |||||| |||| || |||||
Sbjct: 2089 agggctcacattcttggcctcaccaagccgaactgcctgcgcaaagctcttagttatatg 2030

                                                      
Query: 533  gcccaccgggtcagtgggtacggtcgagggcttcttgggctc 574
             || ||  | |||||||  || ||| ||||||||||||||||
Sbjct: 2029 accaactagatcagtggccacagtcaagggcttcttgggctc 1988



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ggcttgcacaaaaactgcagc 60
            |||||||||||||||||||||
Sbjct: 2445 ggcttgcacaaaaactgcagc 2425



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 613  tcagtgggcacagtcgacggcttcttgggctca 645
            ||||||| ||||||| | |||||||||||||||
Sbjct: 2019 tcagtggccacagtcaagggcttcttgggctca 1987
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>emb|Z79999.2|HS111A3 Human DNA sequence from clone CITF22-111A3 on chromosome 22, complete
             sequence
          Length = 42776

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 18    gatccacattgaacttacagag 39
             ||||||||||||||||||||||
Sbjct: 29771 gatccacattgaacttacagag 29792
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>gb|AC011276.12| Homo sapiens chromosome , clone RP11-13J17, complete sequence
          Length = 98967

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 131   aaaagaaaagtacacaagagacccaaggga 160
             |||| ||||| |||||||||||||||||||
Sbjct: 22402 aaaaaaaaagaacacaagagacccaaggga 22431
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>gb|AC116913.6| Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence
          Length = 152561

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 131  aaaagaaaagtacacaagagacccaaggga 160
            |||| ||||| |||||||||||||||||||
Sbjct: 8683 aaaaaaaaagaacacaagagacccaaggga 8654
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>gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12
          Length = 112253

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 409    tctctttcacttcaacaggctt 430
              ||||||||||||||||||||||
Sbjct: 103839 tctctttcacttcaacaggctt 103860
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>ref|NM_102094.2| Arabidopsis thaliana COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c
           oxidase AT1G22450 (COX6B) mRNA, complete cds
          Length = 1069

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 ctctttcacttcaacaggctt 430
           |||||||||||||||||||||
Sbjct: 238 ctctttcacttcaacaggctt 218
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>gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosome 7, complete sequence
          Length = 157795

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 141   tacacaagagacccaagggaggagg 165
             ||||||||||||||||| |||||||
Sbjct: 69728 tacacaagagacccaagtgaggagg 69704
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>gb|AY096696.1| Arabidopsis thaliana putative cytochrome c oxidase subunit
           (At1g22450) mRNA, complete cds
          Length = 607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 ctctttcacttcaacaggctt 430
           |||||||||||||||||||||
Sbjct: 105 ctctttcacttcaacaggctt 85
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>gb|AY063997.1| Arabidopsis thaliana putative cytochrome c oxidase subunit
           (At1g22450) mRNA, complete cds
          Length = 900

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 ctctttcacttcaacaggctt 430
           |||||||||||||||||||||
Sbjct: 238 ctctttcacttcaacaggctt 218
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 596    gatatggcccaccagggtcag 616
              |||||||||||||||||||||
Sbjct: 143566 gatatggcccaccagggtcag 143546
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>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence
          Length = 212484

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 141   tacacaagagacccaagggaggagg 165
             ||||||||||||||||| |||||||
Sbjct: 12095 tacacaagagacccaagtgaggagg 12119
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>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   ctctttcacttcaacaggctt 430
             |||||||||||||||||||||
Sbjct: 82022 ctctttcacttcaacaggctt 82042
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>ref|XM_392490.2| PREDICTED: Apis mellifera similar to apolipophorin precursor protein
            (LOC408961), mRNA
          Length = 9894

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 75   tactgcccaccgaggaattaa 95
            |||||||||||||||||||||
Sbjct: 7550 tactgcccaccgaggaattaa 7570
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>gb|AY086483.1| Arabidopsis thaliana clone 25361 mRNA, complete sequence
          Length = 874

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 ctctttcacttcaacaggctt 430
           |||||||||||||||||||||
Sbjct: 179 ctctttcacttcaacaggctt 159
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>dbj|AB035444.1| Arabidopsis thaliana mRNA for subunit 6b of cytochrome c oxidase,
           complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 ctctttcacttcaacaggctt 430
           |||||||||||||||||||||
Sbjct: 133 ctctttcacttcaacaggctt 113
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>ref|XM_527731.1| PREDICTED: Pan troglodytes similar to Tubulin gamma-1 chain (Gamma-1
            tubulin) (Gamma-tubulin complex component 1) (GCP-1)
            (LOC472356), mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 531  tggcccaccgggtcagtggg 550
            ||||||||||||||||||||
Sbjct: 1310 tggcccaccgggtcagtggg 1329
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>gb|AC136150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0023F12, complete sequence
          Length = 147801

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   aggagtcttggtgatatggc 603
             ||||||||||||||||||||
Sbjct: 40594 aggagtcttggtgatatggc 40575
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>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02,
              complete sequence
          Length = 143438

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    aggagtcttggtgatatggc 603
              ||||||||||||||||||||
Sbjct: 141129 aggagtcttggtgatatggc 141110
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>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 76922 ttaataaagatattaaacgcaaaa 76945



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 73547 ttaataaagatattaaacgcaaaa 73570



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 70172 ttaataaagatattaaacgcaaaa 70195
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>gb|BC001968.1| Homo sapiens cyclin-dependent kinase 9 (CDC2-related kinase), mRNA
            (cDNA clone MGC:5166 IMAGE:3460767), complete cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 1579 ctcagaaacactggggctgg 1598
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>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete sequence
          Length = 187401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    agctttctgatgaggaagca 365
              ||||||||||||||||||||
Sbjct: 112185 agctttctgatgaggaagca 112166
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>gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, complete sequence
          Length = 177864

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   ttcaacaggcttggcagcaa 438
             ||||||||||||||||||||
Sbjct: 24909 ttcaacaggcttggcagcaa 24928
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>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete
             sequence
          Length = 216041

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tccatggttggcaaagggca 223
             ||||||||||||||||||||
Sbjct: 83915 tccatggttggcaaagggca 83896
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>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence
          Length = 210797

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    gcacagcctgtgcaaaggtc 521
              ||||||||||||||||||||
Sbjct: 133403 gcacagcctgtgcaaaggtc 133384
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>gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosome 5, complete sequence
          Length = 203685

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    ttcaacaggcttggcagcaa 438
              ||||||||||||||||||||
Sbjct: 177498 ttcaacaggcttggcagcaa 177517
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>emb|AL162586.26| Human DNA sequence from clone RP11-228B15 on chromosome 9 Contains the
             5' end of the SH2D3C gene for SH2 domain containing 3C
             (CHAT,NSP3), the CDK9 gene for cyclin-dependent kinase 9
             (CDC2-related kinase) (TAK, C-2k, CDC2L4, PITALRE), the
             FPGS gene for folylpolyglutamate synthase
             (folylpolyglutamate synthetase), the 3' end fo the ENG
             gene for endoglin (Osler-Rendu-Weber syndrome 1)(END, ORW,
             HHT1, ORW1, CD105), a novel gene and five CpG islands,
             complete sequence
          Length = 80642

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   ctcagaaacactggggctgg 661
             ||||||||||||||||||||
Sbjct: 41918 ctcagaaacactggggctgg 41937
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>emb|AL034550.31|HS1184F4 Human DNA sequence from clone RP5-1184F4 on chromosome 20q11.1-11.23
              Contains the 3' end of the ASXL1 gene for additional sex
              combs like 1 (Drosophila), the C20orf112 gene for a novel
              protein similar to nucleolar protein 4 (NOL4), a novel gene
              and three CpG islands, complete sequence
          Length = 118873

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    acagcctgtgcaaaggtctt 523
              ||||||||||||||||||||
Sbjct: 108725 acagcctgtgcaaaggtctt 108744
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>emb|X80230.1|HSSTPKC2K H.sapiens mRNA (clone C-2k) mRNA for serine/threonine protein kinase
          Length = 1758

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 1617 ctcagaaacactggggctgg 1636
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>emb|AL683873.14| Mouse DNA sequence from clone RP23-119G22 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 104602

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 415   tcacttcaacaggcttggcagcaa 438
             |||| |||||||||||||||||||
Sbjct: 95639 tcacatcaacaggcttggcagcaa 95662
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>gb|AC155932.6| Mus musculus BAC clone RP23-85K13 from chromosome 10, complete sequence
          Length = 239525

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   gcacagcctgtgcaaaggtc 521
             ||||||||||||||||||||
Sbjct: 45888 gcacagcctgtgcaaaggtc 45869
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>emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 in linkage group 7
             Contains the gene for a novel protein similar to
             vertebrate suppression of tumorigenicity 5 (ST5), a novel
             gene, the gene for a novel protein similar to vertebrate
             RAS-like estrogen-regulated growth-inhibitor (RERG) and
             the gene for a novel protein similar to vertebrate
             serine/threonine kinase 33 (STK33), complete sequence
          Length = 201768

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   aacaggcttggcagcaacag 441
             ||||||||||||||||||||
Sbjct: 93270 aacaggcttggcagcaacag 93251
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>ref|NM_001261.2| Homo sapiens cyclin-dependent kinase 9 (CDC2-related kinase) (CDK9),
            mRNA
          Length = 1791

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 1617 ctcagaaacactggggctgg 1636
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>gb|AF517840.1| Homo sapiens cyclin-dependent kinase 9 (CDC2-related kinase) (CDK9)
            gene, complete cds
          Length = 6333

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 5540 ctcagaaacactggggctgg 5559
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>emb|CR618153.1| full-length cDNA clone CS0DA005YG17 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1761

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 1627 ctcagaaacactggggctgg 1646
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>ref|XM_689939.1| PREDICTED: Danio rerio similar to Tripartite motif protein 66
            (LOC566660), mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 422  aacaggcttggcagcaacag 441
            ||||||||||||||||||||
Sbjct: 3289 aacaggcttggcagcaacag 3308
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>gb|AC111120.12| Mus musculus chromosome 7, clone RP23-225M4, complete sequence
          Length = 151727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   aagagacccaagggaggagg 165
             ||||||||||||||||||||
Sbjct: 28171 aagagacccaagggaggagg 28190
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>gb|AC004985.2| Homo sapiens PAC clone RP5-1165K10 from 7, complete sequence
          Length = 159507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 531   tggcccaccgggtcagtggg 550
             ||||||||||||||||||||
Sbjct: 45596 tggcccaccgggtcagtggg 45577
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>gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    gcacagcctgtgcaaaggtc 521
              ||||||||||||||||||||
Sbjct: 150307 gcacagcctgtgcaaaggtc 150288
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 584      aggagtcttggtgatatggc 603
                ||||||||||||||||||||
Sbjct: 17631049 aggagtcttggtgatatggc 17631030
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>gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds,
             alternatively spliced
          Length = 102910

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   gcacagcctgtgcaaaggtc 521
             ||||||||||||||||||||
Sbjct: 28479 gcacagcctgtgcaaaggtc 28460
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>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23,
              complete sequence
          Length = 176610

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 92     ttaataacgatattaaacgcaaaa 115
              ||||||| ||||||||||||||||
Sbjct: 106439 ttaataaagatattaaacgcaaaa 106416



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 92     ttaataacgatattaaacgcaaaa 115
              ||||||| ||||||||||||||||
Sbjct: 103070 ttaataaagatattaaacgcaaaa 103047



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 99695 ttaataaagatattaaacgcaaaa 99672
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>gb|AC153849.8| Mus musculus  BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205220

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    ttcaacaggcttggcagcaa 438
              ||||||||||||||||||||
Sbjct: 132296 ttcaacaggcttggcagcaa 132277
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>gb|AC011442.5|AC011442 Homo sapiens chromosome 19 clone CTC-215O4, complete sequence
          Length = 143557

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    gcacagcctgtgcaaaggtc 521
              ||||||||||||||||||||
Sbjct: 110305 gcacagcctgtgcaaaggtc 110286
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>gb|AF255306.1|AF255306 Homo sapiens protein kinase CDK9 (CDK9) gene, complete cds
          Length = 5572

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 642  ctcagaaacactggggctgg 661
            ||||||||||||||||||||
Sbjct: 5431 ctcagaaacactggggctgg 5450
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>emb|Z24009.1|HS282WG5 H. sapiens (D15S202) DNA segment containing (CA) repeat; clone
           AFM282wg5; single read
          Length = 409

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 gcacagcctgtgcaaaggtc 521
           ||||||||||||||||||||
Sbjct: 241 gcacagcctgtgcaaaggtc 260
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
             sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 46640 ttaataaagatattaaacgcaaaa 46617



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 43265 ttaataaagatattaaacgcaaaa 43242



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ttaataacgatattaaacgcaaaa 115
             ||||||| ||||||||||||||||
Sbjct: 39890 ttaataaagatattaaacgcaaaa 39867
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>emb|Y14754.2|MMSTOPEX1 Mus musculus partial stop gene, exon 1 and joined CDS
          Length = 7140

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  aagagacccaagggaggagg 165
            ||||||||||||||||||||
Sbjct: 2274 aagagacccaagggaggagg 2255
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 584      aggagtcttggtgatatggc 603
                ||||||||||||||||||||
Sbjct: 17725712 aggagtcttggtgatatggc 17725693
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>emb|Z99113.2|BSUB0010 Bacillus subtilis complete genome (section 10 of 21): from 1807106 to
             2014934
          Length = 207829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 491   ctcgccaagccgcacagcctgtgc 514
             |||||||||||| |||||||||||
Sbjct: 37596 ctcgccaagccgaacagcctgtgc 37619
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>gb|AC155250.1| Mus musculus BAC clone RP24-228F21 from 9, complete sequence
          Length = 166760

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   ctcagaaacactggggctgg 661
             ||||||||||||||||||||
Sbjct: 68032 ctcagaaacactggggctgg 68051
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>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence
          Length = 167144

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aagagacccaagggaggagg 165
             ||||||||||||||||||||
Sbjct: 32721 aagagacccaagggaggagg 32702
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>gb|BC050000.1| Mus musculus cDNA clone IMAGE:6466318
          Length = 1474

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 aagagacccaagggaggagg 165
           ||||||||||||||||||||
Sbjct: 121 aagagacccaagggaggagg 140
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>emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chromosome 15, complete
              sequence
          Length = 221087

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    tcaacaggcttggcagcaac 439
              ||||||||||||||||||||
Sbjct: 214885 tcaacaggcttggcagcaac 214866
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>gb|AC152500.7| Mus musculus BAC clone RP24-555P14 from chromosome 10, complete
             sequence
          Length = 170235

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   gcacagcctgtgcaaaggtc 521
             ||||||||||||||||||||
Sbjct: 11964 gcacagcctgtgcaaaggtc 11983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,091,278
Number of Sequences: 3902068
Number of extensions: 5091278
Number of successful extensions: 91931
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91734
Number of HSP's gapped (non-prelim): 197
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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