ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_MATIN (Q9GF34) Maturase K (Intron maturase) 28 4.6
2INVO_PANPA (P14591) Involucrin 28 7.8
3MPH23_YEAST (P47186) Alpha-glucosides permease MPH2/3 (Maltose t... 28 7.8
4RIR1_CHLPN (Q9Z6S5) Ribonucleoside-diphosphate reductase alpha s... 28 7.8
5BPHF_RHOSR (O05151) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.2.-) 28 7.8

>MATK_MATIN (Q9GF34) Maturase K (Intron maturase)|
          Length = 504

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 10  LLYNEITW*TYFYNLYTCIYFNIRF-PTKISVSKLY 114
           LL N+  W  YF NL+ C YF+I F P K ++++LY
Sbjct: 291 LLMNK--WKYYFVNLWQC-YFSIWFQPQKANINQLY 323



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>INVO_PANPA (P14591) Involucrin|
          Length = 560

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 80  GSLQRLVCQNCTSLRSEGKPEDIARQWDHLFP*SQLVH-NTISTSILQIESAKNQAGLP 253
           G L+ LV Q     + EG+ E + +Q +HL    QL H       +  +E  + Q G+P
Sbjct: 371 GQLEHLVQQEGQLEQQEGQVEHLEQQVEHLEQLGQLKHLEEQEGQLKHLEQQQGQLGVP 429



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>MPH23_YEAST (P47186) Alpha-glucosides permease MPH2/3 (Maltose transport|
           protein 2/3)
          Length = 602

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 YPSNRVSQEPSWVTMVDKVKR 273
           YP    S EPSW+ M D+ K+
Sbjct: 21  YPGKAKSHEPSWIEMDDQTKK 41



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>RIR1_CHLPN (Q9Z6S5) Ribonucleoside-diphosphate reductase alpha subunit (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 1044

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 36  DILLQPIYMHIFQHKVPYKD*CVKIVHLYAVKGSQKILLVNGTISSHNHS 185
           D+L +    +  Q  V + D C +I+  YA+  S  +    GT +S++ S
Sbjct: 750 DVLYELNISYASQEAVEFSDECSEIIAYYAILASSLLAKERGTYASYSGS 799



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>BPHF_RHOSR (O05151) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.2.-)|
          Length = 258

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 245 QLGSWLTLFEGYSC*LC----YVLAVIMGRDGPIDEQYLLASLHCVEMY 111
           Q+G WL L + YS  +C    +   +I G   P D + +LA L  +  Y
Sbjct: 18  QIGFWLALGDAYSAEVCAGAGFDWLLIDGEHAPQDLRSVLAQLQVIGAY 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,803,980
Number of Sequences: 219361
Number of extensions: 752295
Number of successful extensions: 1541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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