ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22d11 |
|---|---|
| Clone Library Name | barley_pub |
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 50.1 bits (118), Expect(2) = 5e-12 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -1 Query: 673 GKWRSRFAMAGFRPYPLSALVNNTIRALLNGYN 575 GKW+SR MAGFRPYPLS+ VN+ IR LL Y+ Sbjct: 511 GKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYS 543 Score = 40.4 bits (93), Expect(2) = 5e-12 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAW 493 Y L+EKDG + LGW++RKL+ +SAW Sbjct: 546 YTLDEKDGAMLLGWRSRKLISASAW 570
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Frame = -1 Query: 679 PFGKWRSRFAMAGFRPYPLSALVNNTIRALLNGYN---KLLQARGERWCHLSW 530 PFGKW++R MAGFRP PLS+LVN TIR LL Y+ KL + G +L W Sbjct: 482 PFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSDNYKLAERDGA--LYLGW 532 Score = 46.6 bits (109), Expect = 7e-05 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAW 493 YKL E+DG +YLGWK+R LVVSSAW Sbjct: 519 YKLAERDGALYLGWKSRPLVVSSAW 543
>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)| Length = 511 Score = 37.0 bits (84), Expect(2) = 6e-04 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y +EE +G + LGW+ R L+ +SAWR Sbjct: 481 YNVEENEGCLLLGWQTRPLIATSAWR 506 Score = 25.8 bits (55), Expect(2) = 6e-04 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSALVNNTIRALL------NGYN 575 +WR+RF + GF+P + + LL +GYN Sbjct: 445 QWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYN 482
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 40.0 bits (92), Expect = 0.007 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EEKDG + LGW R L+ +SAWR Sbjct: 598 YRVEEKDGCLTLGWHTRPLIATSAWR 623
>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like| protein 19) Length = 547 Score = 37.4 bits (85), Expect(2) = 0.008 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE DG + +GW+ R L+ +SAW+ Sbjct: 520 YRVEENDGCLMIGWQTRPLITTSAWK 545 Score = 21.6 bits (44), Expect(2) = 0.008 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSALVNNTIRALLNGY 578 +WR R AGF P L + LL+ Y Sbjct: 484 QWRIRMKSAGFDPIHLGSSAFKQASMLLSLY 514
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 37.4 bits (85), Expect(2) = 0.008 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE DG + LGW R L+ +SAW+ Sbjct: 504 YRVEESDGCLMLGWHTRPLIATSAWK 529 Score = 21.6 bits (44), Expect(2) = 0.008 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -1 Query: 670 KWRSRFAMAGF 638 +WR+RF AGF Sbjct: 468 QWRNRFGSAGF 478
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 39.7 bits (91), Expect = 0.009 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 YK+EEK+G + LGW R L+ +SAWR Sbjct: 594 YKVEEKEGCLTLGWHTRPLIATSAWR 619
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 39.7 bits (91), Expect = 0.009 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 YK+EEK+G + LGW R L+ +SAWR Sbjct: 589 YKVEEKEGCLTLGWHTRPLIATSAWR 614
>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem| protein B) (GAIP-B) (CmGAIP-B) Length = 587 Score = 36.2 bits (82), Expect(2) = 0.016 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + LGW R L+V+SAW+ Sbjct: 552 YRVEENNGSLTLGWHTRPLIVTSAWK 577 Score = 21.6 bits (44), Expect(2) = 0.016 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSA 617 +WR+R +GF P L + Sbjct: 516 QWRTRLCSSGFEPIHLGS 533
>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem| protein) (GAIP) (CmGAIP) Length = 579 Score = 35.4 bits (80), Expect(2) = 0.016 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + LGW R L+ +SAW+ Sbjct: 545 YRVEENEGSLMLGWHTRPLIATSAWK 570 Score = 22.3 bits (46), Expect(2) = 0.016 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSA 617 +WR+R + AGF P L + Sbjct: 509 QWRTRLSSAGFDPIHLGS 526
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 38.5 bits (88), Expect = 0.020 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EEK+G + LGW R L+ +SAWR Sbjct: 596 YRVEEKEGCLTLGWHTRPLIATSAWR 621
>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant| protein 1) (VvGAI1) Length = 590 Score = 35.0 bits (79), Expect(2) = 0.027 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + LGW R L+ +SAW+ Sbjct: 550 YRVEENNGCLMLGWHTRPLIATSAWQ 575 Score = 21.9 bits (45), Expect(2) = 0.027 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSA 617 +WR+R AGF P L + Sbjct: 514 QWRARLGSAGFDPVNLGS 531
>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)| Length = 579 Score = 35.4 bits (80), Expect(2) = 0.035 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + LGW R L+ +SAW+ Sbjct: 549 YRVEENNGCLMLGWHTRPLITTSAWK 574 Score = 21.2 bits (43), Expect(2) = 0.035 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSALV---NNTIRALLNG 581 +W +RF +GF P L + + + AL NG Sbjct: 513 QWANRFGSSGFAPAHLGSNAFKQASMLLALFNG 545
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 37.4 bits (85), Expect = 0.043 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE DG + LGW R L+ +SAW+ Sbjct: 549 YRVEENDGCLMLGWHTRPLIATSAWK 574
>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)| Length = 523 Score = 34.3 bits (77), Expect(2) = 0.058 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE DG + L W+ + L+ +SAW+ Sbjct: 491 YRVEENDGSLMLAWQTKPLIAASAWK 516 Score = 21.6 bits (44), Expect(2) = 0.058 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = -1 Query: 670 KWRSRFAMAGFRPYPLSA 617 +WR R AGF P L + Sbjct: 455 QWRKRMGSAGFDPVNLGS 472
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 35.4 bits (80), Expect = 0.17 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + LGW R L+ +SAW+ Sbjct: 556 YRVEESNGCLMLGWHTRPLITTSAWK 581
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 33.1 bits (74), Expect = 0.82 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y++EE +G + L W R L+ +SAW+ Sbjct: 543 YRVEENNGCLMLSWHTRPLITTSAWK 568
>UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 326 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 406 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_SALTY (P27670) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 326 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 406 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 326 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 406 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 326 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 406 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>FA26B_RAT (Q5RJQ8) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 426 NPRWNLISECEFHNPKNC 373 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>FA26B_MOUSE (Q8VEC4) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 426 NPRWNLISECEFHNPKNC 373 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>FET5_YEAST (P43561) Iron transport multicopper oxidase FET5 precursor (EC| 1.-.-.-) Length = 622 Score = 29.6 bits (65), Expect = 9.1 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Frame = -1 Query: 646 AGFRPYPLSALVNNTIRALLNGYNKLLQARGER---W---CHLSWMEEQKAGCIFCMAVT 485 A +P+P +V +T+ +G+ +L+ R + W CH+ W +Q +F A Sbjct: 458 APLQPFPERPMVRDTVVLEPSGH-VVLRFRADNPGVWYFHCHVDWHLQQGLASVFIEAPV 516 Query: 484 FLNMEEACLGSFMALCSAHKSKVEPNQRM*IP*SKELWLLASWRPAVNPPLRTPFRFDGY 305 L E +++ +C A V N W P PL F +GY Sbjct: 517 LLQEREKLNENYLDICKAADIPVVGNAAG----HSNDWFDLKGLPRQPEPLPKGFTTEGY 572
>MOC_ORYSA (Q84MM9) Protein MONOCULM 1| Length = 441 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 567 YKLEEKDGVIYLGWKNRKLVVSSAWR 490 Y ++E G +LGW+ R L+ SAW+ Sbjct: 412 YLVQEARGACFLGWQTRPLLSVSAWQ 437 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,767,412 Number of Sequences: 219361 Number of extensions: 2235253 Number of successful extensions: 4980 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4980 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
