ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21o11 |
|---|---|
| Clone Library Name | barley_pub |
>HFLX_ECOLI (P25519) GTP-binding protein hflX| Length = 426 Score = 75.9 bits (185), Expect = 1e-13 Identities = 42/141 (29%), Positives = 81/141 (57%), Gaps = 2/141 (1%) Frame = -1 Query: 686 PXMXVAAFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKI 507 P VAAF+ATL+E ++++++H++D + Q+ I AV+ VL+E+D +P L+V NKI Sbjct: 260 PHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKI 319 Query: 506 DNTDN--PLRVKEEAAKQGIICISAMNGDGLEELCNAIQAKLKDSLVLIEAFVPYNKGDL 333 D ++ P ++E K + +SA G G+ +L A+ +L + +P +G L Sbjct: 320 DMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRL 379 Query: 332 LNDIHKVGIVERTEYMENGTL 270 + +++ +E+ E+G++ Sbjct: 380 RSRFYQLQAIEKEWMEEDGSV 400
>TRME_NITEU (Q82XA1) tRNA modification GTPase trmE| Length = 451 Score = 39.7 bits (91), Expect = 0.009 Identities = 26/86 (30%), Positives = 47/86 (54%) Frame = -1 Query: 656 TLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVK 477 T I ++ +++ LVD H + ++ + ++ + L P L V NKID + P R++ Sbjct: 288 TYAAIEQADLVLLLVDSRHGVTEEDRSVLTRLPERL-----PVLTVHNKIDLSAQPPRLE 342 Query: 476 EEAAKQGIICISAMNGDGLEELCNAI 399 E + I +SA+NG+G+E L A+ Sbjct: 343 ENTSGPTIY-LSAINGEGIELLRAAL 367
>IF2_STAS1 (Q49X54) Translation initiation factor IF-2| Length = 701 Score = 37.7 bits (86), Expect = 0.033 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%) Frame = -1 Query: 662 RATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDN-TDNPL 486 RA ++++ +I+V D + Q I A++ KE + VP +V NKID T NP Sbjct: 269 RARGAQVTDITILVVAADDG--VMPQTIEAINHA-KEAE---VPTIVAVNKIDKPTSNPD 322 Query: 485 RVKEEAAKQGIIC-----------ISAMNGDGLEELCNAI 399 RV +E + G+I +SA++GDG+E+L I Sbjct: 323 RVMQELTEYGLIPEDWGGDTIFVPLSALSGDGIEDLLEMI 362
>IF2_PELLD (Q3B1Z8) Translation initiation factor IF-2| Length = 915 Score = 37.0 bits (84), Expect = 0.057 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 12/148 (8%) Frame = -1 Query: 668 AFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-N 492 A RA ++++ I+V D S + Q I A++ VP +V NK+D + N Sbjct: 477 AMRARGAQVTDIVILVVAADDS--VMPQTIEAINHAKAA----GVPIVVAINKMDKPEAN 530 Query: 491 PLRVKEEAAKQGIIC-----------ISAMNGDGLEELCNAIQAKLKDSLVLIEAFVPYN 345 P ++K + ++ G++ ISA G G+EEL VL EA + Sbjct: 531 PEKIKTQLSEAGVLVEEWGGESQCQEISAKKGLGIEELMEK---------VLTEAEMREL 581 Query: 344 KGDLLNDIHKVGIVERTEYMENGTLIKA 261 KG+ D+ G++ +E + +I A Sbjct: 582 KGNFSKDVPATGVIVESELDKGKGVISA 609
>TRME_THEMA (Q9WYA4) Probable tRNA modification GTPase trmE| Length = 450 Score = 37.0 bits (84), Expect = 0.057 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 6/98 (6%) Frame = -1 Query: 656 TLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVK 477 TL+EI ++ I++ ++D S L ++ K+L+ I + LVV NK+D + ++ Sbjct: 285 TLQEIEKADIVLFVLDASSPLDEED----RKILER--IKNKRYLVVINKVDVVE---KIN 335 Query: 476 EEAAKQGI------ICISAMNGDGLEELCNAIQAKLKD 381 EE K + + ISA+ G+GLE+L +I + ++ Sbjct: 336 EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQE 373
>IF2_DECAR (Q47D94) Translation initiation factor IF-2| Length = 904 Score = 35.8 bits (81), Expect = 0.13 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 23/110 (20%) Frame = -1 Query: 536 VPKLVVWNKIDNTD-NPLRVKEEAAKQGII-----------CISAMNGDGLEELCNAI-- 399 VP +V NKID D NP RVK+E +G+I +SA G G++EL + Sbjct: 506 VPLVVAVNKIDKPDANPERVKQELVAEGVIPEEYGGDSPFVPVSAKKGTGIDELLEQVLL 565 Query: 398 QAKL------KDSL---VLIEAFVPYNKGDLLNDIHKVGIVERTEYMENG 276 QA++ KD+ ++IEA + +G + + + G ++R + + G Sbjct: 566 QAEILELTAQKDAPAKGLIIEARLDKGRGAVATMLVQSGTLKRGDIVLAG 615
>IF2_SYNY3 (P72689) Translation initiation factor IF-2| Length = 1001 Score = 35.4 bits (80), Expect = 0.16 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%) Frame = -1 Query: 668 AFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-N 492 A RA ++++ +I+V D Q ++ + VP +V NK+D + N Sbjct: 561 AMRARGAKVTDIAILVVAADDGVQPQTKE------AISHAKAAGVPLIVAINKVDKPEAN 614 Query: 491 PLRVKEEAAKQGIIC-----------ISAMNGDGLEELCNAI 399 P R+K+E ++ G++ +SA+NGD L+ L I Sbjct: 615 PDRIKQELSELGLLAEEWGGDTIMVPVSALNGDNLDGLLEMI 656
>TRME_CHLTE (Q8KAS1) tRNA modification GTPase trmE| Length = 473 Score = 34.7 bits (78), Expect = 0.28 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 3/106 (2%) Frame = -1 Query: 662 RATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKID---NTDN 492 R + +++E+ +I++L+D+ + ++ + ++ + + L V NK+D N D Sbjct: 301 RRSRMKMAEADLILYLLDLGTERLDDELTEIREL--KAAHPAAKFLTVANKLDRAANADA 358 Query: 491 PLRVKEEAAKQGIICISAMNGDGLEELCNAIQAKLKDSLVLIEAFV 354 +R + +I ISA+NGDG++ L + +K+ L EA V Sbjct: 359 LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASV 404
>IF2_BUCBP (Q89AF5) Translation initiation factor IF-2| Length = 876 Score = 34.7 bits (78), Expect = 0.28 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Frame = -1 Query: 668 AFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNT-DN 492 A RA ++++ I++ ++ I + Q I A+ + SVP ++ NKID N Sbjct: 442 AMRARGAQVTD--IVILVIAIDDGIKPQTIEAI----QHAQAASVPIIIAINKIDKLITN 495 Query: 491 PLRVKEEAAKQGI-----------ICISAMNGDGLEELCNAI 399 ++K E K I + ISA +G+G+E L NAI Sbjct: 496 IEKIKNELTKYNILPEEWGGDNIFVNISAKSGEGIESLLNAI 537
>IF2_HELHP (Q7VHF6) Translation initiation factor IF-2| Length = 882 Score = 33.5 bits (75), Expect = 0.63 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 23/138 (16%) Frame = -1 Query: 647 EISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-NPLRVKEE 471 ++++ +IIV D + QQ I A L +V ++ NK+D + NP ++K E Sbjct: 452 QVTDIAIIVIAADDG--VKQQTIEA----LNHAKAANVQIIIAMNKMDKENANPDKLKAE 505 Query: 470 AAKQGI-----------ICISAMNGDGLEELCNA--IQAKL---------KDSLVLIEAF 357 A+ G I ISA NGDG+E L IQA++ + +++EA Sbjct: 506 CAEIGFTPNEWGGEYEFIPISAKNGDGVENLLETILIQAEVLELKASHQGRAKAIVLEAS 565 Query: 356 VPYNKGDLLNDIHKVGIV 303 + +G + I + GI+ Sbjct: 566 LEKGRGPVATIIMQQGIL 583
>IF2_BUCAI (P57458) Translation initiation factor IF-2| Length = 864 Score = 33.5 bits (75), Expect = 0.63 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 23/136 (16%) Frame = -1 Query: 635 SSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPL-RVKEEAAKQ 459 + I++ +V + Q I A+ + +VP +V NKID TD+ + +V+ + K Sbjct: 437 TDIVILVVAADDGVMPQTIEAIQHAKEA----NVPVIVAINKIDKTDSDIDKVRNDLMKY 492 Query: 458 GI-----------ICISAMNGDGLEELCNAI--QAKLKD---------SLVLIEAFVPYN 345 I + +SA G G+ +L N I QA++ + +++E+F+ Sbjct: 493 NILSEEWGGENIFVSVSAKTGKGINKLLNVILLQAEMLELKAVTTGMAEGIVVESFLDKG 552 Query: 344 KGDLLNDIHKVGIVER 297 +G + + K G +++ Sbjct: 553 RGPIATVLVKKGQLKK 568
>IF2_BURPS (Q63TP8) Translation initiation factor IF-2| Length = 975 Score = 33.5 bits (75), Expect = 0.63 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 23/111 (20%) Frame = -1 Query: 536 VPKLVVWNKIDNTD-NPLRVKEEAAKQGI-----------ICISAMNGDGLEELCN--AI 399 VP +V NKID + NP RVK+E +G+ + +SA G G+++L + Sbjct: 577 VPIVVAINKIDKPEANPDRVKQELVAEGVVPEEYGGDSPFVPVSAKTGAGIDDLLENVLL 636 Query: 398 QAKLKD---------SLVLIEAFVPYNKGDLLNDIHKVGIVERTEYMENGT 273 QA++ + ++IEA + KG + + + G + R + + GT Sbjct: 637 QAEVLELKAPVESPAKGIVIEAKLDKGKGPVATVLVQSGTLSRGDVVLAGT 687
>IF2_BURP1 (Q3JSY9) Translation initiation factor IF-2| Length = 975 Score = 33.5 bits (75), Expect = 0.63 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 23/111 (20%) Frame = -1 Query: 536 VPKLVVWNKIDNTD-NPLRVKEEAAKQGI-----------ICISAMNGDGLEELCN--AI 399 VP +V NKID + NP RVK+E +G+ + +SA G G+++L + Sbjct: 577 VPIVVAINKIDKPEANPDRVKQELVAEGVVPEEYGGDSPFVPVSAKTGAGIDDLLENVLL 636 Query: 398 QAKLKD---------SLVLIEAFVPYNKGDLLNDIHKVGIVERTEYMENGT 273 QA++ + ++IEA + KG + + + G + R + + GT Sbjct: 637 QAEVLELKAPVESPAKGIVIEAKLDKGKGPVATVLVQSGTLSRGDVVLAGT 687
>IF2_BURMA (Q62KK9) Translation initiation factor IF-2| Length = 975 Score = 33.5 bits (75), Expect = 0.63 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 23/111 (20%) Frame = -1 Query: 536 VPKLVVWNKIDNTD-NPLRVKEEAAKQGI-----------ICISAMNGDGLEELCN--AI 399 VP +V NKID + NP RVK+E +G+ + +SA G G+++L + Sbjct: 577 VPIVVAINKIDKPEANPDRVKQELVAEGVVPEEYGGDSPFVPVSAKTGAGIDDLLENVLL 636 Query: 398 QAKLKD---------SLVLIEAFVPYNKGDLLNDIHKVGIVERTEYMENGT 273 QA++ + ++IEA + KG + + + G + R + + GT Sbjct: 637 QAEVLELKAPVESPAKGIVIEAKLDKGKGPVATVLVQSGTLSRGDVVLAGT 687
>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2| Length = 975 Score = 33.5 bits (75), Expect = 0.63 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 23/112 (20%) Frame = -1 Query: 536 VPKLVVWNKIDNTD-NPLRVKEEAAKQGII----------C-ISAMNGDGLEELCNAIQ- 396 VP +V NKID NP R+K++ + I+ C +SA+ G+ EL I+ Sbjct: 572 VPIIVAVNKIDKPGANPERIKQQLTELEIVPEEWGGSTIFCEVSALKKTGITELLEQIKL 631 Query: 395 ----AKLKDSL------VLIEAFVPYNKGDLLNDIHKVGIVERTEYMENGTL 270 A+LK + ++IEA + KG + + K G VE +Y+ GT+ Sbjct: 632 VAEVAELKANPKRSGTGLVIEAKMEKGKGPVATLLVKDGTVEVGQYIVAGTM 683
>Y920_METJA (Q58330) Hypothetical protein MJ0920| Length = 185 Score = 32.7 bits (73), Expect = 1.1 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Frame = -1 Query: 686 PXMXVAAFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKI 507 P M T EEI++S +I+H++D S L + + +LK P +VV NK Sbjct: 82 PIMTPKVLEKTFEEINDSDMIIHVIDGSVGLL-RSFERLHHLLKFR--YQKPIIVVINKC 138 Query: 506 D--NTDNPLRVK---EEAAKQGIICISAMNGDGLEELCNAIQAKLK 384 D N + +K E K I +SA +G+ EL + I LK Sbjct: 139 DLLNDSDKEHLKNYVERRIKNTPIFVSAKTFEGIPELLDIIIKYLK 184
>IF2_BUCAP (Q8K9H1) Translation initiation factor IF-2| Length = 867 Score = 32.3 bits (72), Expect = 1.4 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 23/136 (16%) Frame = -1 Query: 635 SSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPL-RVKEEAAKQ 459 + I+V +V + Q I A+ + +VP +V NKID D+ + ++K + K Sbjct: 440 TDIVVLVVAADDGVKPQTIEAIQHAKEA----NVPIIVAINKIDKVDSNIDQIKNDLTKY 495 Query: 458 GI-----------ICISAMNGDGLEELCNAI--QAKLKD---------SLVLIEAFVPYN 345 I + ISA G G++ L NAI Q+++ + V+IE+F+ Sbjct: 496 NILSEEWGGENIFVLISAKTGKGIDNLLNAILLQSEILELKAISTGMAEGVVIESFLDKG 555 Query: 344 KGDLLNDIHKVGIVER 297 +G + + + G +++ Sbjct: 556 RGPIATVLVQKGNLKK 571
>ENGC_CLOTE (Q895P5) Probable GTPase engC (EC 3.6.1.-)| Length = 290 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 6/103 (5%) Frame = -1 Query: 572 VDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEE------AAKQGIICISAMNGDGLEEL 411 ++K L + + + + +V +NK+D +NP KEE +A +I ++A G G+E+ Sbjct: 92 LNKFLLQCEYNEINAVVAFNKVDLVENP--EKEEVVDIIKSAGYEVIYLNAKEGMGIEK- 148 Query: 410 CNAIQAKLKDSLVLIEAFVPYNKGDLLNDIHKVGIVERTEYME 282 I+ KLK +L ++ K ++N + ++E + E Sbjct: 149 ---IREKLKGNLNVLCGPSGAGKSTIINKLVGKDVMETGQISE 188
>ENGA_PORGI (Q7MT48) GTP-binding protein engA| Length = 437 Score = 31.6 bits (70), Expect = 2.4 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -1 Query: 650 EEISESSII-VHLVDISHQLAQQQIGAV---DKVLKELDIDSVPKLVVWNKIDNTDNPLR 483 EEI++ I V D+ +A Q G ++V + L P +VV NK+DNT++ Sbjct: 70 EEINKQVYIAVEEADVVLFVADNQTGVTSLDEQVAEILRRSKKPVIVVANKVDNTEDHYS 129 Query: 482 VKE--EAAKQGIICISAMNGDGLEELCNAIQAKL 387 E CI+A++G G +L + + L Sbjct: 130 ASEFYSFGLGDPYCIAAVSGSGTGDLLDRVMELL 163
>Y352_BUCBP (Q89AE7) Hypothetical GTP-binding protein bbp_352| Length = 338 Score = 31.6 bits (70), Expect = 2.4 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 12/107 (11%) Frame = -1 Query: 653 LEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELD-----IDSVPKLVVWNK---IDNT 498 L+ + +++H++DIS + I + +L EL + + P V+NK ID+ Sbjct: 232 LKHLERCHLLLHIIDISQINFKNTITNIHVILDELKTYNKILHNKPIWFVFNKIDLIDDI 291 Query: 497 DNPLRVKEEAAKQGII----CISAMNGDGLEELCNAIQAKLKDSLVL 369 D ++K K G I ISA+ GL+++ I LK+ +L Sbjct: 292 DINTKLKSILEKLGSIQQYFLISAIKKTGLKKIVKKIYDFLKNKNLL 338
>ENGA_BACTN (Q8A135) GTP-binding protein engA| Length = 437 Score = 31.2 bits (69), Expect = 3.1 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Frame = -1 Query: 662 RATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLR 483 + L + E+ +I+ +VD+ + + + +V L + P ++V NK DN + Sbjct: 74 KQVLLAVEEADVILFVVDVMNGVTDLDM----QVATILRRANSPVIMVANKTDNNELQYN 129 Query: 482 VKEEAAKQGI---ICISAMNGDGLEELCNAIQAKL-KDSLVLIEAFVP 351 E K G+ CISA+ G G +L + I +K K++ +++ +P Sbjct: 130 APE-FYKLGLGDPYCISAITGSGTGDLMDLIVSKFNKETSEILDDDIP 176
>ENGC_METMA (Q8PTZ6) Probable GTPase engC (EC 3.6.1.-)| Length = 365 Score = 30.8 bits (68), Expect = 4.1 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%) Frame = -1 Query: 527 LVVWNKIDNTDNPLRVKEE----AAKQGIICISAMNGDGLEEL 411 +++ NKID DNP+R+ E+ A +I +SA++ GLE L Sbjct: 153 VILLNKIDLEDNPIRLVEKIQSIAGNVPVIPLSALSKTGLEAL 195
>IF2_FUSNN (Q8R5Z1) Translation initiation factor IF-2| Length = 737 Score = 30.4 bits (67), Expect = 5.3 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Frame = -1 Query: 566 KVLKELDIDSVPKLVVWNKIDNTD-NPLRVKEEAAKQGIICISAMNGDGLEELCNAIQAK 390 + + + VP +V NKID + NP++VK+E + G+ +SA G +E + + AK Sbjct: 329 EAISHAKVAKVPIIVAVNKIDKPEANPMKVKQELMEHGL--VSAEWGGDVEFV--EVSAK 384 Query: 389 LKDSL------VLIEAFVPYNKGD 336 K +L +LI A + KG+ Sbjct: 385 QKINLDGLLDTILITAEILELKGN 408
>HGFA_HUMAN (Q04756) Hepatocyte growth factor activator precursor (EC 3.4.21.-)| (HGF activator) (HGFA) [Contains: Hepatocyte growth factor activator short chain; Hepatocyte growth factor activator long chain] Length = 655 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 468 GFLLHSQWVIGIVNLIPHNQLRNRVYIQLFQYFVNST 578 G L+H+ WV+ + H+ R+ V + L Q+F N T Sbjct: 434 GSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRT 470
>EFG_MYCGE (P47335) Elongation factor G (EF-G)| Length = 688 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -1 Query: 410 CNAIQAKLKDSLVLIEAFVPYNK-GDLLNDIH-KVGIVERTEYMENGTLIKAHV 255 CN + L + ++ IE VP GD + DI + GI+E TE +N LIKA V Sbjct: 593 CNPV---LLEPIMAIEVTVPEQYFGDTMGDISSRRGIIEGTEQRDNVQLIKAKV 643
>ERA_RHIME (Q92R46) GTP-binding protein era homolog| Length = 313 Score = 30.0 bits (66), Expect = 6.9 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = -1 Query: 638 ESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEEAAKQ 459 ++ +I+ L+D + G + +L+ L PK++V NK+D +K AA Sbjct: 100 DADLIMLLIDSERGIK----GDAEAILEGLKEVHQPKVLVLNKVDQVRREDLLKLAAAAN 155 Query: 458 GIIC------ISAMNGDGLEELCNAIQAKLKD 381 ++ ISA+ G G E++ + + L + Sbjct: 156 DVVAFERTFMISALTGSGCEDVMDYLAETLPE 187
>MTF1_FLAOK (P14871) Modification methylase FokI (EC 2.1.1.72)| (Adenine-specific methyltransferase FokI) (M.FokI) Length = 647 Score = 30.0 bits (66), Expect = 6.9 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Frame = -1 Query: 521 VWNKIDNTDNPLRVKEEAAKQGI-ICISAMNGDGL--EELCNAIQAKLKDSL----VLIE 363 + +K++ DN V EE K + + +G G+ E Q DSL +L++ Sbjct: 4 IGSKVNLLDNIQEVIEENVKDDAHVFMDLFSGTGIVGENFKKDYQVLSNDSLYFSYILLK 63 Query: 362 AFVPYNKGDLLNDIHKVGIVERTEYMEN 279 A + N +++ K+GI E Y+EN Sbjct: 64 AKIENNSIPNFSELKKIGIKEPLHYLEN 91
>ENGC_CHLTE (Q8KC52) Probable GTPase engC (EC 3.6.1.-)| Length = 311 Score = 30.0 bits (66), Expect = 6.9 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Frame = -1 Query: 572 VDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKE--EAAKQ---GIICISAMNGDGLEELC 408 VD+ L + + +P L+V NKID D V+E E +Q I +SA +G G+EEL Sbjct: 118 VDRYLVFAESEKLPLLIVVNKID-LDEEGMVEEDLEVYRQLDCNICLVSAEDGRGIEEL- 175 Query: 407 NAIQAKLKDSLVLIEAFVPYNKGDLLN 327 + L+D + K L+N Sbjct: 176 ---RELLRDRVSAFSGHSGVGKSTLIN 199
>ENGA_CHRVO (Q7NS92) GTP-binding protein engA| Length = 469 Score = 30.0 bits (66), Expect = 6.9 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = -1 Query: 662 RATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLR 483 + TL+ + E+ +V LVD L Q ++ L++LD P + NK + + + Sbjct: 74 KQTLQAVDEADAVVFLVDGRAGLTPQDKIIANR-LRQLDR---PVFLAVNKAEGMKHAIA 129 Query: 482 VKE--EAAKQGIICISAMNGDGLEELCNAIQAKLKDSL 375 E E A + ISA +GDG+ EL + D + Sbjct: 130 GAEFHELALGEPLVISAAHGDGVRELMELVLEGFPDEV 167
>SELB_METJA (Q57918) Selenocysteine-specific elongation factor (SelB| translation factor) Length = 469 Score = 29.6 bits (65), Expect = 9.0 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = -1 Query: 551 LDIDSVPKLVVWNKID-NTDNPLRVKEEAAKQ-----------GIICISAMNGDGLEELC 408 LD+ ++P +VV NKID D ++ E KQ II ISA G+G+ EL Sbjct: 111 LDLLNIPTIVVINKIDIANDEEIKRTEMFMKQILNSTINLKNSKIIKISAKTGEGIGELK 170 Query: 407 NAIQAKLKDSL 375 ++ L DSL Sbjct: 171 KELK-NLLDSL 180
>NIFE_KLEPN (P08737) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 457 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 449 CISAMNGDGLEELCNAIQAKLKDSLVLIEAFVPYNKGDLLN 327 C+ AM GD LE +C A Q ++ I+A Y +L N Sbjct: 124 CVPAMEGDDLEAVCQAAQTATGVPVIAIDAAGFYGSKNLGN 164
>ENGB_BRUSU (P64067) Probable GTP-binding protein engB| Length = 241 Score = 29.6 bits (65), Expect = 9.0 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Frame = -1 Query: 617 LVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-----------NPLRVKEE 471 L+D H + + +VL LD +V +V KID + L K Sbjct: 155 LIDARHGIKKNDA----EVLDLLDKAAVSYQIVLTKIDKIKPAGVPRLLEETHKLTYKRA 210 Query: 470 AAKQGIICISAMNGDGLEELCNAIQAKLKD 381 A GII S+ G GL++L AI LK+ Sbjct: 211 ACFPGIIATSSEKGQGLDDLRAAIALLLKE 240
>ENGB_BRUME (P64066) Probable GTP-binding protein engB| Length = 241 Score = 29.6 bits (65), Expect = 9.0 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Frame = -1 Query: 617 LVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-----------NPLRVKEE 471 L+D H + + +VL LD +V +V KID + L K Sbjct: 155 LIDARHGIKKNDA----EVLDLLDKAAVSYQIVLTKIDKIKPAGVPRLLEETHKLTYKRA 210 Query: 470 AAKQGIICISAMNGDGLEELCNAIQAKLKD 381 A GII S+ G GL++L AI LK+ Sbjct: 211 ACFPGIIATSSEKGQGLDDLRAAIALLLKE 240
>ASPG2_HAEIN (P43843) Probable L-asparaginase periplasmic precursor (EC 3.5.1.1)| (L-asparagine amidohydrolase) (L-ASNase) Length = 349 Score = 29.6 bits (65), Expect = 9.0 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Frame = -1 Query: 623 VHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTD-NPLRVKEEAAKQGIIC 447 +H + ++ + + ++ +DS+PK+ + N PL A QGI+ Sbjct: 205 IHNSKVDYERSPESKHTINTPFNVEKLDSLPKVGIIYAYSNAPVEPLNALLNAGYQGIVS 264 Query: 446 ISAMNGDGLEELCNAIQAKLKDSLVLIEAF-VP--YNKGDLLNDIHKVGIV 303 NG+ + ++ KDS+V++ + VP Y D D K G V Sbjct: 265 AGVGNGNVNAAHLDRLEKAAKDSVVVVRSSRVPTGYTTRDAEVDDSKYGFV 315
>ENGA_BIFLO (Q8G6A8) GTP-binding protein engA| Length = 463 Score = 29.6 bits (65), Expect = 9.0 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Frame = -1 Query: 641 SESSIIVHLVDISHQLAQQQIGAV---DKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEE 471 S++ + V L D + Q+G ++++K L P ++ NKID+ + + E Sbjct: 97 SQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQASEY-LAAE 155 Query: 470 AAKQGI---ICISAMNGDGLEELCNAIQAKLKDS 378 K G+ ISAM+G G+ +L + KLK + Sbjct: 156 FWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQA 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,079,393 Number of Sequences: 219361 Number of extensions: 1804657 Number of successful extensions: 4941 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4940 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
