ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DPOD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymer... 32 1.2
2MSK1_TOBAC (Q40518) Shaggy-related protein kinase NtK-1 (EC 2.7.... 32 1.2
3SKEL_DROME (Q9GPJ1) Protein skeletor 31 2.7
4CHLE_MIMIV (Q5UR02) Probable cholinesterase precursor (EC 3.1.1.... 30 6.0
5KSG7_ARATH (Q39011) Shaggy-related protein kinase eta (EC 2.7.11... 30 6.0
6APTH1_CANAL (Q5AGD1) Acyl-protein thioesterase 1 (EC 3.1.2.-) 30 7.9
7NADK_MOUSE (P58058) NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD ki... 30 7.9
8TOB1_RAT (Q8R5K6) Tob1 protein (Transducer of erbB-2 1) 30 7.9
9SAMD8_MOUSE (Q9DA37) Sphingomyelin synthase-related 1 (Sterile a... 30 7.9

>DPOD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymerase delta|
           subunit p66)
          Length = 462

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -1

Query: 354 EQKPVAKTEQKPKVAGPPKAKSNDMKRNQGKQQQ 253
           EQ PV+ TE  PK+A PP  K +  K   GK QQ
Sbjct: 262 EQPPVSVTE--PKLAAPPAQKKSSRKSEPGKVQQ 293



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>MSK1_TOBAC (Q40518) Shaggy-related protein kinase NtK-1 (EC 2.7.11.1)|
          Length = 409

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 176 LSFLLHSYVVCLLHCCFTGTRSDQCRMYLVCAIEHIP 66
           +  L H  VVCL HC F+ T  D+  +YL   +E++P
Sbjct: 118 MRLLDHPNVVCLKHCFFSTTEKDE--VYLNLVLEYVP 152



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>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
 Frame = -1

Query: 546 WEPRSMV-TPENPKKGQSKKDNASTNQSALKLQGAISLSNNTNDRXXXXXXXXXXXXXXX 370
           W  RS + TP NP  G+S +     +   L+ +G  +  N    R               
Sbjct: 14  WTQRSRLRTPRNPAAGESHRRGTGASARGLRRRGVRTARNQDGIRAAEALEESLLRNPNL 73

Query: 369 XXXKTEQKPVAKTEQKPKV 313
                 Q P+    QKP V
Sbjct: 74  NPNHPNQNPIPNPHQKPNV 92



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>CHLE_MIMIV (Q5UR02) Probable cholinesterase precursor (EC 3.1.1.8)|
           (Acylcholine acylhydrolase)
          Length = 579

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 368 GFFLSGEGDDFFLGTFRSLVLLLRLIAPCSLRADWFVLALSFFDCPFFGFSGVTIDRGSH 547
           G F+SG  +DF +G F  L +  R+I    + A + V A  FF     G S +   RG +
Sbjct: 130 GAFISGSPEDFGVGNFSILAVTKRIII---VAASYRVNAFGFFSSELLGKSQLEA-RGVY 185

Query: 548 G 550
           G
Sbjct: 186 G 186



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>KSG7_ARATH (Q39011) Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta)|
           (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)
          Length = 380

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 161 HSYVVCLLHCCFTGTRSDQCRMYLVCAIEHIP 66
           H  VVCL HC F+ T  D+  ++L   +E++P
Sbjct: 90  HPNVVCLKHCFFSTTSKDE--LFLNLVMEYVP 119



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>APTH1_CANAL (Q5AGD1) Acyl-protein thioesterase 1 (EC 3.1.2.-)|
          Length = 231

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 636 SATSQGNFNYGVGNGGWGWSWMDRWIAARPW--EPRSMVTPENPK 508
           SA +   F +G+G+ G GWSW+ + ++      +P + V P  PK
Sbjct: 14  SAKAAVIFLHGLGDSGDGWSWLPQLVSQSKLINDPINYVFPNAPK 58



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>NADK_MOUSE (P58058) NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase)|
          Length = 439

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 237 SQELQVVAASLGSSSCHSTSPWEGQPPLVSAPFSLLVSAPFSPLVSSCQE 386
           SQEL   +AS   S+CH    W    P+     S  +SA  SP + S +E
Sbjct: 11  SQELSADSASYNCSACHGDETWSYNHPIRGRAKSRSLSA--SPALGSTKE 58



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>TOB1_RAT (Q8R5K6) Tob1 protein (Transducer of erbB-2 1)|
          Length = 365

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = -1

Query: 510 KKGQSKKDNASTNQSALKLQG-AISLSNNTNDRXXXXXXXXXXXXXXXXXXKTEQKPVAK 334
           K G +K  N+  +    +    ++ L+ N ND                    ++Q+P  +
Sbjct: 186 KFGSTKMKNSGRSSKVARTSPISLGLNVNVNDLLKQKAISSSMHSLYGLGLGSQQQPQPQ 245

Query: 333 TEQKPKVAGPPKAKSNDMKRNQGKQQQ 253
            +Q P    PP       +++Q +QQQ
Sbjct: 246 PQQPPSQPPPPPPPPQQQQQHQQQQQQ 272



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>SAMD8_MOUSE (Q9DA37) Sphingomyelin synthase-related 1 (Sterile alpha motif|
           domain-containing 8)
          Length = 478

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 226 KHAAKRLPDAV*YIL*SCLFFYTLMWFVSYIAVLLEQEVTNVE 98
           KH+A+RL       + SC++ + +  F S+I V++ + V +++
Sbjct: 202 KHSARRLDPEYWKTILSCVYVFIVFGFTSFIMVIVHERVPDMQ 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,606,592
Number of Sequences: 219361
Number of extensions: 1605455
Number of successful extensions: 5327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5319
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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