ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags21o07 |
|---|---|
| Clone Library Name | barley_pub |
>YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I| Length = 1888 Score = 31.6 bits (70), Expect = 0.47 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 322 HTHTLLLCTFWMAKEE---TDRKVPALKLIFGLLCKQRLTNSTSYLFPSDSLVSDVYDLQ 152 HTHTLL+C +W A E + ++ + ++ K RL + ++L ++ + D + Sbjct: 1097 HTHTLLICLYWAAPENCRPSLNRIRDIVIVDNSHLKARLISLKAWLHLMKYVIKEGTDYE 1156 Query: 151 TAFWKSW 131 A W Sbjct: 1157 LAQGMEW 1163
>SEN1_SCHPO (Q92355) Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1)| Length = 1687 Score = 28.5 bits (62), Expect = 4.0 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 13/126 (10%) Frame = -2 Query: 340 WICCSRHTHTLLLCTFWMAKEETDRKVPALKLIFGLLCKQRLTNSTS-----YLFPSDSL 176 W C T + FW A +ET P+ K + +RL + TS Y ++SL Sbjct: 23 WFCSGLLTQYIQPTFFWFAHDET----PSFKWVLNAY-HERLRSCTSCIQAYYELRNESL 77 Query: 175 VSDVY--------DLQTAFWKSWGVFMGVN*ATKILEDGKHPRTRMLK*KNLVSFVMYTF 20 Y DLQ W W + ++LED K + +L + T Sbjct: 78 AKGSYSFTGFSITDLQEK-WNKWDII-------RVLEDFKALEDETIDFTSLPCLIFETL 129 Query: 19 LISVLF 2 L LF Sbjct: 130 LNPKLF 135
>MCAR1_HUMAN (Q9H1U9) Mitochondrial carrier triple repeat 1| Length = 297 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +2 Query: 77 VFSIFQDFRCLIYTHENAPTLPESGLKII 163 +F +++D CL++ H +AP SG+ + Sbjct: 98 MFGLYEDLSCLLHKHVSAPEFATSGVAAV 126
>P3C2B_HUMAN (O00750) Phosphatidylinositol-4-phosphate 3-kinase C2| domain-containing beta polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-beta) (PtdIns-3-kinase C2 beta) (PI3K-C2beta) (C2-PI3K) Length = 1634 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Frame = +1 Query: 256 LEPSCRFPLSPS---KKCIVEECEYGESN 333 L SCR PLSPS K + +C Y SN Sbjct: 1032 LNGSCRLPLSPSLLVKGIVPRDCSYFNSN 1060
>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1156 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -2 Query: 295 FWMAKEETDRKVPALKLIFGLLCKQRLTNSTSYLFPSDSLVSDVYD 158 F+ KEE ++ + L + L+ +++ + F +DSL+ D YD Sbjct: 826 FFRIKEEANKFIEKLNIKINLISERKEIQNPLPPFTTDSLLMDAYD 871
>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor| Length = 569 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%) Frame = +1 Query: 88 LPRFSLPNLHP*KRPNSSRKRF-------EDHIHR*P 177 L RF+L +LH K+P SS F DHIHR P Sbjct: 16 LRRFTLHHLHLSKKPLSSSSLFLCSAAKMNDHIHRVP 52
>CTL1_HUMAN (Q8WWI5) Choline transporter-like protein 1 (Solute carrier family| 44 member 1) (CD92 antigen) (CDw92) Length = 657 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 192 SRVIVWLAMYMIFKPLSGRVGAFSWV*IRQRKSWK 88 SRV+VW+ ++ G G W+ +QR+S K Sbjct: 237 SRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPK 271
>CTL1_MOUSE (Q6X893) Choline transporter-like protein 1 (Solute carrier family| 44 member 1) (CD92 antigen) (CDw92) Length = 653 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 192 SRVIVWLAMYMIFKPLSGRVGAFSWV*IRQRKSWK 88 SRV+VW+ ++ G G W+ +QR+S K Sbjct: 236 SRVLVWILTVLVILGSLGGTGVLWWLYAKQRRSPK 270
>TOR1_SCHPO (O14356) Phosphatidylinositol 3-kinase tor1 (EC 2.7.1.137)| (PtdIns-3-kinase tor1) (PI3-kinase tor1) (PI3K tor1) Length = 2335 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 223 QRLTNSTSYLFPS-DSLVSDVYDLQTAFWKS 134 Q+LT TS + P+ VSD+++L FW+S Sbjct: 869 QQLTTLTSIIGPNIRDYVSDIFNLSKVFWES 899
>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 982 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 143 LEELGRFHGCKLGNENLGRWKTPTDTDVKVEEPSFL 36 + +GRFH LG++ G WKT ++EP L Sbjct: 506 IHHMGRFHN--LGSQPSGPWKTLLHLPTLLQEPRLL 539
>CTL1_RAT (Q8VII6) Choline transporter-like protein 1 (Solute carrier family| 44 member 1) (CD92 antigen) (CDw92) Length = 656 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 192 SRVIVWLAMYMIFKPLSGRVGAFSWV*IRQRKSWK 88 SRV+VW+ ++ G G W+ +QR+S K Sbjct: 236 SRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPK 270
>BXE_CLOBU (P30995) Botulinum neurotoxin type E precursor (EC 3.4.24.69)| (BoNT/E) (Bontoxilysin E) [Contains: Botulinum neurotoxin E light chain; Botulinum neurotoxin E heavy chain] Length = 1250 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 159 SYTSLTKLSLGNKYDVEFVRRCLQSKPKISL-RAGTFLSVSSFA 287 SYT K L NKYD+E + L K I++ FL+ SS + Sbjct: 724 SYTLEEKNELTNKYDIEQIENELNQKVSIAMNNIDRFLTESSIS 767 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,515,438 Number of Sequences: 219361 Number of extensions: 1207238 Number of successful extensions: 2977 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2977 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
