ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110932.1| Zea mays CL34612_1 mRNA sequence 246 8e-62
2gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 226 7e-56
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 226 7e-56
4dbj|AK059645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
5ref|NM_129740.2| Arabidopsis thaliana unknown protein AT2G41760 ... 52 0.002
6ref|NM_129741.1| Arabidopsis thaliana unknown protein AT2G41770 ... 52 0.002
7gb|AY056269.1| Arabidopsis thaliana unknown protein (At2g41770) ... 52 0.002
8gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map... 52 0.002
9emb|BX819743.1|CNS0AAFI Arabidopsis thaliana Full-length cDNA Co... 52 0.002
10ref|NM_115602.3| Arabidopsis thaliana unknown protein AT3G57420 ... 48 0.036
11gb|BT015820.1| Arabidopsis thaliana At3g57420 gene, complete cds 48 0.036
12emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.036
13emb|AJ617230.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, cl... 48 0.036
14emb|BX823502.1|CNS0A7UO Arabidopsis thaliana Full-length cDNA Co... 48 0.036
15gb|BT021114.1| Arabidopsis thaliana At3g57420 mRNA, complete cds 48 0.036
16gb|AC062032.5| Homo sapiens BAC clone RP11-515K12 from 2, comple... 46 0.14
17gb|AC160147.6| Mus musculus 10 BAC RP24-576A6 (Roswell Park Canc... 44 0.55
18gb|AC165356.5| Mus musculus BAC clone RP23-142E18 from chromosom... 42 2.2
19gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, com... 42 2.2
20gb|AC135640.5| Mus musculus BAC clone RP23-362A12 from chromosom... 42 2.2
21gb|AC122003.2| Mus musculus BAC clone RP24-336G3 from 6, complet... 42 2.2
22gb|AC102472.7| Mus musculus, clone RP24-380G1, complete sequence 42 2.2
23gb|AC182629.3| Mus musculus BAC clone RP24-573O8 from chromosome... 42 2.2
24emb|BX511173.6| Zebrafish DNA sequence from clone DKEY-278K10, c... 42 2.2
25gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chrom... 42 2.2
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
27gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park C... 42 2.2
28dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
29emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromo... 42 2.2
30gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 42 2.2
31gb|AC136372.13| Mus musculus chromosome 15, clone RP23-232G24, c... 40 8.7
32gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, co... 40 8.7
33gb|BC010284.1| Homo sapiens ferredoxin 1, mRNA (cDNA clone MGC:5... 40 8.7
34gb|AY571339.1| Psephurus gladius mitochondrion, complete genome 40 8.7
35gb|AC138715.3| Mus musculus BAC clone RP23-283E23 from chromosom... 40 8.7
36gb|AC161828.9| Mus musculus 10 BAC RP23-262J2 (Roswell Park Canc... 40 8.7
37emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chro... 40 8.7
38emb|AL354777.16| Human DNA sequence from clone RP11-33K8 on chro... 40 8.7
39emb|AL645843.14| Mouse DNA sequence from clone RP23-338K15 on ch... 40 8.7
40emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chr... 40 8.7
41emb|CR626036.1| full-length cDNA clone CS0DI074YK05 of Placenta ... 40 8.7
42emb|CR611214.1| full-length cDNA clone CS0DE011YP10 of Placenta ... 40 8.7
43emb|CR607314.1| full-length cDNA clone CS0DJ015YA23 of T cells (... 40 8.7
44ref|NM_004109.3| Homo sapiens ferredoxin 1 (FDX1), nuclear gene ... 40 8.7
45ref|XM_696573.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 8.7
46gb|AC156015.2| Mus musculus BAC clone RP24-345H1 from chromosome... 40 8.7
47gb|AC073288.27| Homo sapiens 3 BAC RP11-543D10 (Roswell Park Can... 40 8.7
48gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Ca... 40 8.7
49gb|AC023672.9| Homo sapiens BAC clone RP11-499I20 from 2, comple... 40 8.7
50gb|AC004674.1| Homo sapiens X BAC GSHB-600G8 (Genome Systems Hum... 40 8.7
51gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Ca... 40 8.7
52gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, compl... 40 8.7
53emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in... 40 8.7
54dbj|AP000924.7| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.7
55gb|AC151343.2| Xenopus tropicalis clone ISB-373E17, complete seq... 40 8.7
56gb|J03548.1|HUMADD Human adrenodoxin mRNA, complete cds 40 8.7
57gb|M23668.1|HUMADRDO04 Homo sapiens adrenodoxin gene, exon 4 40 8.7
58gb|M34786.1|HUMFRDXB2 Human ferredoxin gene, exon 4 40 8.7
59gb|M34785.1|HUMFRDXA2 Human ferredoxin gene, exon 4 40 8.7 
>gb|AY110932.1| Zea mays CL34612_1 mRNA sequence
          Length = 1215

 Score =  246 bits (124), Expect = 8e-62
 Identities = 247/288 (85%)
 Strand = Plus / Minus

                                                                       
Query: 348 tttataccaactccatcagaagagggtctcccttggacatcagccgaattacctttatga 407
           |||| ||||||||||||||||| ||||||||  ||||||| |||||||| ||||||||||
Sbjct: 834 tttaaaccaactccatcagaagtgggtctcctatggacattagccgaatcacctttatga 775

                                                                       
Query: 408 aatcaatctcgttcatcactttaactgggaaaacagcaggtgactgcgctgtataaatat 467
           |||||||||| ||||| ||||| || ||||||||||||||||  || |||||||||||| 
Sbjct: 774 aatcaatctcattcataactttcacagggaaaacagcaggtgcttgagctgtataaatag 715

                                                                       
Query: 468 ttgcgaaagtctcattggctgccaagttggtcttgaaaactgttccggccagagcttccg 527
             | ||| ||| |||| |||| ||| |  | |||||| |||||||| |||||||| || |
Sbjct: 714 acgagaacgtcgcattagctggcaactgtggcttgaacactgttccagccagagcatcag 655

                                                                       
Query: 528 aatcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgat 587
           | ||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 654 agtcaaaattttgagtcgagtccattgccaagaagaacattgggaccgcaatcttgtgat 595

                                                           
Query: 588 gcagatccaaattgccaacgagactcacaagatcaccaaagtcctcaa 635
           ||| |||||||| ||| || |||| |||||||||||||||||| ||||
Sbjct: 594 gcaaatccaaatcgccgacaagacccacaagatcaccaaagtcttcaa 547



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 137  ctttccttcagcaggacagccggaccgagctgaaccccagtaacctt 183
            ||||| |||||||||||| | ||||||||| || ||| |||||||||
Sbjct: 1044 ctttctttcagcaggacaactggaccgagcagatcccaagtaacctt 998
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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
             complete sequence
          Length = 164709

 Score =  226 bits (114), Expect = 7e-56
 Identities = 246/290 (84%)
 Strand = Plus / Plus

                                                                         
Query: 346   tatttataccaactccatcagaagagggtctcccttggacatcagccgaattacctttat 405
             |||||||||||||||||| ||||||||||||||| ||||||| | |||||| | ||||||
Sbjct: 17124 tatttataccaactccattagaagagggtctcccgtggacataacccgaataagctttat 17183

                                                                         
Query: 406   gaaatcaatctcgttcatcactttaactgggaaaacagcaggtgactgcgctgtataaat 465
              |||||||||||||||   ||||| |||||||||||||||||||  || |||||||||||
Sbjct: 17184 aaaatcaatctcgttctgtactttcactgggaaaacagcaggtgcgtgagctgtataaat 17243

                                                                         
Query: 466   atttgcgaaagtctcattggctgccaagttggtcttgaaaactgttccggccagagcttc 525
             | ||| ||||||||| ||| |  |||||||| || |||| |||||||| |||||||| ||
Sbjct: 17244 acttgagaaagtctcgttgcccaccaagttgctcctgaacactgttccagccagagcatc 17303

                                                                         
Query: 526   cgaatcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatg 585
              || |||||||||| |||||| |||||||||| ||||||||||||||| ||||  || ||
Sbjct: 17304 agagtcaaaatttttaggcgagtccatcgccaggaagaacatcgggacagcaactttgtg 17363

                                                               
Query: 586   atgcagatccaaattgccaacgagactcacaagatcaccaaagtcctcaa 635
              ||||  ||||||| ||| || || | |||||| |||||||| |||||||
Sbjct: 17364 gtgcaattccaaatcgccgacaagtcccacaaggtcaccaaaatcctcaa 17413



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                         
Query: 233   acagaataaatgcaattacaaca---gagaacctcctgaaaactcaaaactatcgctgtc 289
             |||||||||||| ||||||||||   ||||||| |||||||||  ||| |||| ||||||
Sbjct: 17011 acagaataaatgaaattacaacaatggagaaccccctgaaaacagaaatctatggctgtc 17070

                       
Query: 290   tactctgtcc 299
             ||||||||||
Sbjct: 17071 tactctgtcc 17080
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  226 bits (114), Expect = 7e-56
 Identities = 246/290 (84%)
 Strand = Plus / Plus

                                                                            
Query: 346      tatttataccaactccatcagaagagggtctcccttggacatcagccgaattacctttat 405
                |||||||||||||||||| ||||||||||||||| ||||||| | |||||| | ||||||
Sbjct: 18849746 tatttataccaactccattagaagagggtctcccgtggacataacccgaataagctttat 18849805

                                                                            
Query: 406      gaaatcaatctcgttcatcactttaactgggaaaacagcaggtgactgcgctgtataaat 465
                 |||||||||||||||   ||||| |||||||||||||||||||  || |||||||||||
Sbjct: 18849806 aaaatcaatctcgttctgtactttcactgggaaaacagcaggtgcgtgagctgtataaat 18849865

                                                                            
Query: 466      atttgcgaaagtctcattggctgccaagttggtcttgaaaactgttccggccagagcttc 525
                | ||| ||||||||| ||| |  |||||||| || |||| |||||||| |||||||| ||
Sbjct: 18849866 acttgagaaagtctcgttgcccaccaagttgctcctgaacactgttccagccagagcatc 18849925

                                                                            
Query: 526      cgaatcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatg 585
                 || |||||||||| |||||| |||||||||| ||||||||||||||| ||||  || ||
Sbjct: 18849926 agagtcaaaatttttaggcgagtccatcgccaggaagaacatcgggacagcaactttgtg 18849985

                                                                  
Query: 586      atgcagatccaaattgccaacgagactcacaagatcaccaaagtcctcaa 635
                 ||||  ||||||| ||| || || | |||||| |||||||| |||||||
Sbjct: 18849986 gtgcaattccaaatcgccgacaagtcccacaaggtcaccaaaatcctcaa 18850035



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                            
Query: 233      acagaataaatgcaattacaaca---gagaacctcctgaaaactcaaaactatcgctgtc 289
                |||||||||||| ||||||||||   ||||||| |||||||||  ||| |||| ||||||
Sbjct: 18849633 acagaataaatgaaattacaacaatggagaaccccctgaaaacagaaatctatggctgtc 18849692

                          
Query: 290      tactctgtcc 299
                ||||||||||
Sbjct: 18849693 tactctgtcc 18849702
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>dbj|AK059645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C01, full
            insert sequence
          Length = 1605

 Score =  226 bits (114), Expect = 7e-56
 Identities = 246/290 (84%)
 Strand = Plus / Minus

                                                                        
Query: 346  tatttataccaactccatcagaagagggtctcccttggacatcagccgaattacctttat 405
            |||||||||||||||||| ||||||||||||||| ||||||| | |||||| | ||||||
Sbjct: 1373 tatttataccaactccattagaagagggtctcccgtggacataacccgaataagctttat 1314

                                                                        
Query: 406  gaaatcaatctcgttcatcactttaactgggaaaacagcaggtgactgcgctgtataaat 465
             |||||||||||||||   ||||| |||||||||||||||||||  || |||||||||||
Sbjct: 1313 aaaatcaatctcgttctgtactttcactgggaaaacagcaggtgcgtgagctgtataaat 1254

                                                                        
Query: 466  atttgcgaaagtctcattggctgccaagttggtcttgaaaactgttccggccagagcttc 525
            | ||| ||||||||| ||| |  |||||||| || |||| |||||||| |||||||| ||
Sbjct: 1253 acttgagaaagtctcgttgcccaccaagttgctcctgaacactgttccagccagagcatc 1194

                                                                        
Query: 526  cgaatcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatg 585
             || |||||||||| |||||| |||||||||| ||||||||||||||| ||||  || ||
Sbjct: 1193 agagtcaaaatttttaggcgagtccatcgccaggaagaacatcgggacagcaactttgtg 1134

                                                              
Query: 586  atgcagatccaaattgccaacgagactcacaagatcaccaaagtcctcaa 635
             ||||  ||||||| ||| || || | |||||| |||||||| |||||||
Sbjct: 1133 gtgcaattccaaatcgccgacaagtcccacaaggtcaccaaaatcctcaa 1084



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 60/70 (85%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                        
Query: 233  acagaataaatgcaattacaaca---gagaacctcctgaaaactcaaaactatcgctgtc 289
            |||||||||||| ||||||||||   ||||||| |||||||||  ||| |||  ||||||
Sbjct: 1486 acagaataaatgaaattacaacaatggagaaccccctgaaaacagaaatctaaggctgtc 1427

                      
Query: 290  tactctgtcc 299
            ||||||||||
Sbjct: 1426 tactctgtcc 1417
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>ref|NM_129740.2| Arabidopsis thaliana unknown protein AT2G41760 mRNA, complete cds
          Length = 1493

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacat 567
            |||||||| |||||||||||||| | ||||||||||||
Sbjct: 1232 tcaaaattctgaggcgaatccatagacaagaagaacat 1269



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 351  ataccaactccatcagaagagggtctccct 380
            ||||||||||||||||||| ||||| ||||
Sbjct: 1056 ataccaactccatcagaagcgggtcgccct 1085
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>ref|NM_129741.1| Arabidopsis thaliana unknown protein AT2G41770 mRNA, complete cds
          Length = 2747

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacat 567
            |||||||| |||||||||||||| | ||||||||||||
Sbjct: 2378 tcaaaattctgaggcgaatccatagacaagaagaacat 2341



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 351  ataccaactccatcagaagagggtctccct 380
            ||||||||||||||||||| ||||| ||||
Sbjct: 2554 ataccaactccatcagaagcgggtcgccct 2525
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>gb|AY056269.1| Arabidopsis thaliana unknown protein (At2g41770) mRNA, complete cds
          Length = 2764

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacat 567
            |||||||| |||||||||||||| | ||||||||||||
Sbjct: 2378 tcaaaattctgaggcgaatccatagacaagaagaacat 2341



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 351  ataccaactccatcagaagagggtctccct 380
            ||||||||||||||||||| ||||| ||||
Sbjct: 2554 ataccaactccatcagaagcgggtcgccct 2525
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>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete
             sequence
          Length = 91071

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 530   tcaaaattttgaggcgaatccatcgccaagaagaacat 567
             |||||||| |||||||||||||| | ||||||||||||
Sbjct: 55809 tcaaaattctgaggcgaatccatagacaagaagaacat 55772



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 351   ataccaactccatcagaagagggtctccct 380
             ||||||||||||||||||| ||||| ||||
Sbjct: 55985 ataccaactccatcagaagcgggtcgccct 55956
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>emb|BX819743.1|CNS0AAFI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS21ZF06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2697

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacat 567
            |||||||| |||||||||||||| | ||||||||||||
Sbjct: 2325 tcaaaattctgaggcgaatccatagacaagaagaacat 2288



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 351  ataccaactccatcagaagagggtctccct 380
            ||||||||||||||||||| ||||| ||||
Sbjct: 2501 ataccaactccatcagaagcgggtcgccct 2472
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>ref|NM_115602.3| Arabidopsis thaliana unknown protein AT3G57420 mRNA, complete cds
          Length = 2645

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgatgc 589
            |||||||| ||||||||||||||||  | ||||||||| || || ||||  || | ||||
Sbjct: 2281 tcaaaattctgaggcgaatccatcgataggaagaacataggcacagcaactttgtaatgc 2222

                                            
Query: 590  agatccaaattgccaacgagactcacaagatc 621
            | ||||| ||  ||||||||| | ||||||||
Sbjct: 2221 aaatccatatcaccaacgagattaacaagatc 2190
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>gb|BT015820.1| Arabidopsis thaliana At3g57420 gene, complete cds
          Length = 2575

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgatgc 589
            |||||||| ||||||||||||||||  | ||||||||| || || ||||  || | ||||
Sbjct: 2273 tcaaaattctgaggcgaatccatcgataggaagaacataggcacagcaactttgtaatgc 2214

                                            
Query: 590  agatccaaattgccaacgagactcacaagatc 621
            | ||||| ||  ||||||||| | ||||||||
Sbjct: 2213 aaatccatatcaccaacgagattaacaagatc 2182
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>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10
          Length = 87503

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                        
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgatgc 589
            |||||||| ||||||||||||||||  | ||||||||| || || ||||  || | ||||
Sbjct: 6619 tcaaaattctgaggcgaatccatcgataggaagaacataggcacagcaactttgtaatgc 6678

                                            
Query: 590  agatccaaattgccaacgagactcacaagatc 621
            | ||||| ||  ||||||||| | ||||||||
Sbjct: 6679 aaatccatatcaccaacgagattaacaagatc 6710
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>emb|AJ617230.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np478
          Length = 215

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 527 gaatcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatga 586
           ||||||||||| || || |||||||||||||  || ||||| || || |||| |||||||
Sbjct: 66  gaatcaaaattctgcggagaatccatcgccataaaaaacattggcactgcaaccttatga 7

               
Query: 587 tgca 590
           ||||
Sbjct: 6   tgca 3
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>emb|BX823502.1|CNS0A7UO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS44ZG07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2611

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgatgc 589
            |||||||| ||||||||||||||||  | ||||||||| || || ||||  || | ||||
Sbjct: 2289 tcaaaattctgaggcgaatccatcgataggaagaacataggcacagcaactttgtaatgc 2230

                                            
Query: 590  agatccaaattgccaacgagactcacaagatc 621
            | ||||| ||  ||||||||| | ||||||||
Sbjct: 2229 aaatccatatcaccaacgagattaacaagatc 2198
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>gb|BT021114.1| Arabidopsis thaliana At3g57420 mRNA, complete cds
          Length = 2298

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 530  tcaaaattttgaggcgaatccatcgccaagaagaacatcgggaccgcaatcttatgatgc 589
            |||||||| ||||||||||||||||  | ||||||||| || || ||||  || | ||||
Sbjct: 2120 tcaaaattctgaggcgaatccatcgataggaagaacataggcacagcaactttgtaatgc 2061

                                            
Query: 590  agatccaaattgccaacgagactcacaagatc 621
            | ||||| ||  ||||||||| | ||||||||
Sbjct: 2060 aaatccatatcaccaacgagattaacaagatc 2029
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>gb|AC062032.5| Homo sapiens BAC clone RP11-515K12 from 2, complete sequence
          Length = 182147

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 215    cctttgaaatggacagctacagaataa 241
              ||||||||||||||||| |||||||||
Sbjct: 143348 cctttgaaatggacagcaacagaataa 143374
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>gb|AC160147.6| Mus musculus 10 BAC RP24-576A6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 145198

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 519   gagcttccgaatcaaaattttgaggcgaat 548
             ||||||||||||||||||||| ||| ||||
Sbjct: 25777 gagcttccgaatcaaaattttaaggagaat 25748
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>gb|AC165356.5| Mus musculus BAC clone RP23-142E18 from chromosome 7, complete sequence
          Length = 207936

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 51     atctgtactataatcaaccaccaaa 75
              ||||||||||||| |||||||||||
Sbjct: 175118 atctgtactataaacaaccaccaaa 175094
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>gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, complete sequence
          Length = 176493

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    cacctttgaaatggacagcta 233
              |||||||||||||||||||||
Sbjct: 149565 cacctttgaaatggacagcta 149585
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>gb|AC135640.5| Mus musculus BAC clone RP23-362A12 from chromosome 7, complete sequence
          Length = 205974

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 51     atctgtactataatcaaccaccaaa 75
              ||||||||||||| |||||||||||
Sbjct: 120210 atctgtactataaacaaccaccaaa 120186
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>gb|AC122003.2| Mus musculus BAC clone RP24-336G3 from 6, complete sequence
          Length = 165969

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 240   aaatgcaattacaacagagaa 260
             |||||||||||||||||||||
Sbjct: 81726 aaatgcaattacaacagagaa 81706
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>gb|AC102472.7| Mus musculus, clone RP24-380G1, complete sequence
          Length = 187010

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    cacctttgaaatggacagcta 233
              |||||||||||||||||||||
Sbjct: 170604 cacctttgaaatggacagcta 170584
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>gb|AC182629.3| Mus musculus BAC clone RP24-573O8 from chromosome 7, complete sequence
          Length = 168009

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 51     atctgtactataatcaaccaccaaa 75
              ||||||||||||| |||||||||||
Sbjct: 142052 atctgtactataaacaaccaccaaa 142028
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>emb|BX511173.6| Zebrafish DNA sequence from clone DKEY-278K10, complete sequence
          Length = 163074

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 194  gatacaacacaatatacaaca 214
            |||||||||||||||||||||
Sbjct: 6817 gatacaacacaatatacaaca 6837
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>gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chromosome 2, complete
             sequence
          Length = 159910

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    ccaccaaaactcttgcaaaac 88
             |||||||||||||||||||||
Sbjct: 21683 ccaccaaaactcttgcaaaac 21663
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 226      gacagctacagaataaatgcaatta 250
                ||||||||| |||||||||||||||
Sbjct: 20098244 gacagctactgaataaatgcaatta 20098268
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>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 202478

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 413   atctcgttcatcactttaact 433
             |||||||||||||||||||||
Sbjct: 34614 atctcgttcatcactttaact 34594
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1068H08
          Length = 152794

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 226   gacagctacagaataaatgcaatta 250
             ||||||||| |||||||||||||||
Sbjct: 86518 gacagctactgaataaatgcaatta 86542
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>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence
          Length = 241053

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 51     atctgtactataatcaaccaccaaa 75
              |||||||| ||||||||||||||||
Sbjct: 108147 atctgtaccataatcaaccaccaaa 108123
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 251     caacagagaacctcctgaaaactcaaaac 279
               |||| ||||||||||||||||||| ||||
Sbjct: 2378331 caacggagaacctcctgaaaactccaaac 2378359
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>gb|AC136372.13| Mus musculus chromosome 15, clone RP23-232G24, complete sequence
          Length = 201204

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tactataatcaaccaccaaa 75
             ||||||||||||||||||||
Sbjct: 26419 tactataatcaaccaccaaa 26438
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>gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, complete sequence
          Length = 167088

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 352    taccaactccatcagaagagggtc 375
              ||||| ||||||||||||||||||
Sbjct: 119235 taccacctccatcagaagagggtc 119212
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>gb|BC010284.1| Homo sapiens ferredoxin 1, mRNA (cDNA clone MGC:5249 IMAGE:3048743),
            complete cds
          Length = 3138

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1316 cttccgaatcaaaattttga 1297
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>gb|AY571339.1| Psephurus gladius mitochondrion, complete genome
          Length = 16483

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  tacacaaatgaatatttata 353
            ||||||||||||||||||||
Sbjct: 1126 tacacaaatgaatatttata 1145
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>gb|AC138715.3| Mus musculus BAC clone RP23-283E23 from chromosome 15, complete
             sequence
          Length = 164806

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tactataatcaaccaccaaa 75
             ||||||||||||||||||||
Sbjct: 64605 tactataatcaaccaccaaa 64586
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>gb|AC161828.9| Mus musculus 10 BAC RP23-262J2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 163044

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tactataatcaaccaccaaa 75
             ||||||||||||||||||||
Sbjct: 69242 tactataatcaaccaccaaa 69223
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>emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chromosome 13, complete
            sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  aaatggacagctacagaata 240
            ||||||||||||||||||||
Sbjct: 6262 aaatggacagctacagaata 6281
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>emb|AL354777.16| Human DNA sequence from clone RP11-33K8 on chromosome 9, complete
             sequence
          Length = 152748

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   aacagagaacctcctgaaaa 271
             ||||||||||||||||||||
Sbjct: 67383 aacagagaacctcctgaaaa 67364
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>emb|AL645843.14| Mouse DNA sequence from clone RP23-338K15 on chromosome 11 Contains a
            eukaryotic translation elongation factor 2 (Eef2)
            pseudogene, complete sequence
          Length = 141245

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   tactataatcaaccaccaaa 75
            ||||||||||||||||||||
Sbjct: 1219 tactataatcaaccaccaaa 1200
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>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete
              sequence
          Length = 201815

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tactataatcaaccaccaaa 75
              ||||||||||||||||||||
Sbjct: 201034 tactataatcaaccaccaaa 201015
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>emb|CR626036.1| full-length cDNA clone CS0DI074YK05 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1702

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1333 cttccgaatcaaaattttga 1314
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>emb|CR611214.1| full-length cDNA clone CS0DE011YP10 of Placenta of Homo sapiens
            (human)
          Length = 1445

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1335 cttccgaatcaaaattttga 1316
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>emb|CR607314.1| full-length cDNA clone CS0DJ015YA23 of T cells (Jurkat cell line) Cot
            10-normalized of Homo sapiens (human)
          Length = 1496

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1345 cttccgaatcaaaattttga 1326
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>ref|NM_004109.3| Homo sapiens ferredoxin 1 (FDX1), nuclear gene encoding mitochondrial
            protein, mRNA
          Length = 3236

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1414 cttccgaatcaaaattttga 1395
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>ref|XM_696573.1| PREDICTED: Danio rerio hypothetical protein LOC554875 (LOC554875),
           mRNA
          Length = 2807

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 tccttcagcaggacagccgg 159
           ||||||||||||||||||||
Sbjct: 815 tccttcagcaggacagccgg 796
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>gb|AC156015.2| Mus musculus BAC clone RP24-345H1 from chromosome 16, complete sequence
          Length = 154624

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    ctcattggctgccaagttgg 497
              ||||||||||||||||||||
Sbjct: 126764 ctcattggctgccaagttgg 126745
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>gb|AC073288.27| Homo sapiens 3 BAC RP11-543D10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174025

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    gctgccaagttggtcttgaa 504
              ||||||||||||||||||||
Sbjct: 140504 gctgccaagttggtcttgaa 140485
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>gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 127836

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tttcagctacacaaatgaat 346
             ||||||||||||||||||||
Sbjct: 64450 tttcagctacacaaatgaat 64469
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>gb|AC023672.9| Homo sapiens BAC clone RP11-499I20 from 2, complete sequence
          Length = 127266

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ccaccaaaactcttgcaaaa 87
             ||||||||||||||||||||
Sbjct: 23447 ccaccaaaactcttgcaaaa 23466
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>gb|AC004674.1| Homo sapiens X BAC GSHB-600G8 (Genome Systems Human BAC library)
             complete sequence
          Length = 158886

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   acagaataaatgcaattaca 252
             ||||||||||||||||||||
Sbjct: 64657 acagaataaatgcaattaca 64676
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>gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 161838

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tctatcctttctttccttca 146
             ||||||||||||||||||||
Sbjct: 99100 tctatcctttctttccttca 99081
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>gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, complete sequence
          Length = 155332

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   ctcattggctgccaagttgg 497
             ||||||||||||||||||||
Sbjct: 12488 ctcattggctgccaagttgg 12469
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>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19,
              complete sequence
          Length = 169802

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tccttcagcaggacagccgg 159
              ||||||||||||||||||||
Sbjct: 144024 tccttcagcaggacagccgg 144043
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>dbj|AP000924.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-758F15, complete
             sequence
          Length = 172274

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   cttccgaatcaaaattttga 541
             ||||||||||||||||||||
Sbjct: 96178 cttccgaatcaaaattttga 96159
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>gb|AC151343.2| Xenopus tropicalis clone ISB-373E17, complete sequence
          Length = 88775

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   tgctttgcatttcagctaca 337
             ||||||||||||||||||||
Sbjct: 13455 tgctttgcatttcagctaca 13474
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>gb|J03548.1|HUMADD Human adrenodoxin mRNA, complete cds
          Length = 1463

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  cttccgaatcaaaattttga 541
            ||||||||||||||||||||
Sbjct: 1292 cttccgaatcaaaattttga 1273
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>gb|M23668.1|HUMADRDO04 Homo sapiens adrenodoxin gene, exon 4
          Length = 1457

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 522 cttccgaatcaaaattttga 541
           ||||||||||||||||||||
Sbjct: 785 cttccgaatcaaaattttga 766
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>gb|M34786.1|HUMFRDXB2 Human ferredoxin gene, exon 4
          Length = 1269

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 522 cttccgaatcaaaattttga 541
           ||||||||||||||||||||
Sbjct: 754 cttccgaatcaaaattttga 735
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>gb|M34785.1|HUMFRDXA2 Human ferredoxin gene, exon 4
          Length = 1260

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 522 cttccgaatcaaaattttga 541
           ||||||||||||||||||||
Sbjct: 755 cttccgaatcaaaattttga 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,444,100
Number of Sequences: 3902068
Number of extensions: 6444100
Number of successful extensions: 123563
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123330
Number of HSP's gapped (non-prelim): 230
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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