ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1878 Score = 186 bits (94), Expect = 5e-44 Identities = 196/230 (85%) Strand = Plus / Minus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| ||||| Sbjct: 1576 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 1517 Query: 376 ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 435 ||||||||||||||| || ||||| ||||||||||| || || ||||| ||||||||||| Sbjct: 1516 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 1457 Query: 436 aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 495 ||||||||| |||||| ||||||| |||| || ||||||||||| || | | || || Sbjct: 1456 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 1397 Query: 496 tgccgtgaagccttgtggcacgccggccattgctactggttgataagaag 545 ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| Sbjct: 1396 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaag 1347 Score = 48.1 bits (24), Expect = 0.032 Identities = 50/58 (86%), Gaps = 3/58 (5%) Strand = Plus / Minus Query: 50 ttacattaatcaatcgcagattcacattaaa---aatacatccgttactctgttaagg 104 ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||| Sbjct: 1845 ttacattgatcaatcgcaaattcacattccatcaaatacatctgttactctgttaagg 1788
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 186 bits (94), Expect = 5e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| ||||| Sbjct: 25852113 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 25852172 Query: 376 ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 435 ||||||||||||||| || ||||| ||||||||||| || || ||||| ||||||||||| Sbjct: 25852173 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 25852232 Query: 436 aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 495 ||||||||| |||||| ||||||| |||| || ||||||||||| || | | || || Sbjct: 25852233 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 25852292 Query: 496 tgccgtgaagccttgtggcacgccggccattgctactggttgataagaag 545 ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| Sbjct: 25852293 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaag 25852342 Score = 48.1 bits (24), Expect = 0.032 Identities = 50/58 (86%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 50 ttacattaatcaatcgcagattcacattaaa---aatacatccgttactctgttaagg 104 ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||| Sbjct: 25851844 ttacattgatcaatcgcaaattcacattccatcaaatacatctgttactctgttaagg 25851901
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 186 bits (94), Expect = 5e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| ||||| Sbjct: 37900 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 37959 Query: 376 ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 435 ||||||||||||||| || ||||| ||||||||||| || || ||||| ||||||||||| Sbjct: 37960 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 38019 Query: 436 aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 495 ||||||||| |||||| ||||||| |||| || ||||||||||| || | | || || Sbjct: 38020 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 38079 Query: 496 tgccgtgaagccttgtggcacgccggccattgctactggttgataagaag 545 ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| Sbjct: 38080 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaag 38129 Score = 48.1 bits (24), Expect = 0.032 Identities = 50/58 (86%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 50 ttacattaatcaatcgcagattcacattaaa---aatacatccgttactctgttaagg 104 ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||| Sbjct: 37631 ttacattgatcaatcgcaaattcacattccatcaaatacatctgttactctgttaagg 37688
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 186 bits (94), Expect = 5e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| ||||| Sbjct: 124324 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 124383 Query: 376 ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 435 ||||||||||||||| || ||||| ||||||||||| || || ||||| ||||||||||| Sbjct: 124384 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 124443 Query: 436 aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 495 ||||||||| |||||| ||||||| |||| || ||||||||||| || | | || || Sbjct: 124444 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 124503 Query: 496 tgccgtgaagccttgtggcacgccggccattgctactggttgataagaag 545 ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| Sbjct: 124504 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaag 124553 Score = 48.1 bits (24), Expect = 0.032 Identities = 50/58 (86%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 50 ttacattaatcaatcgcagattcacattaaa---aatacatccgttactctgttaagg 104 ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||| Sbjct: 124055 ttacattgatcaatcgcaaattcacattccatcaaatacatctgttactctgttaagg 124112
>dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full insert sequence Length = 1877 Score = 186 bits (94), Expect = 5e-44 Identities = 196/230 (85%) Strand = Plus / Minus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| ||||| Sbjct: 1575 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 1516 Query: 376 ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 435 ||||||||||||||| || ||||| ||||||||||| || || ||||| ||||||||||| Sbjct: 1515 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 1456 Query: 436 aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 495 ||||||||| |||||| ||||||| |||| || ||||||||||| || | | || || Sbjct: 1455 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 1396 Query: 496 tgccgtgaagccttgtggcacgccggccattgctactggttgataagaag 545 ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| Sbjct: 1395 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaag 1346 Score = 48.1 bits (24), Expect = 0.032 Identities = 50/58 (86%), Gaps = 3/58 (5%) Strand = Plus / Minus Query: 50 ttacattaatcaatcgcagattcacattaaa---aatacatccgttactctgttaagg 104 ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||| Sbjct: 1844 ttacattgatcaatcgcaaattcacattccatcaaatacatctgttactctgttaagg 1787
>gb|AY103766.1| Zea mays PCO100830 mRNA sequence Length = 1823 Score = 161 bits (81), Expect = 3e-36 Identities = 185/219 (84%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 316 ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 375 ||||||||||||||| |||||||| || || | ||||||||||||||| ||||| ||||| Sbjct: 1531 ctagttgtagtacataagctgctgggctgatgactggttcgggtagccatcgtagagggc 1472 Query: 376 ctgggagccagcagcg---agtagccccgcggatacctggcccgcgaggccgtgctggcc 432 ||| || |||||||| || || || || || ||||| |||||||| || |||||||| Sbjct: 1471 ctgagaaccagcagcagcaagaagacctgcagaaacctgacccgcgagaccatgctggcc 1412 Query: 433 agcaatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctc 492 |||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||| || Sbjct: 1411 agcaatctgccctgctgcagcctggcttaaggcaagctgcctctggtaagcaagaagttc 1352 Query: 493 ggctgccgtgaagccttgtggcacgccggccattgctac 531 |||||| ||||| |||||||| || || | ||||||||| Sbjct: 1351 ggctgctgtgaaaccttgtgggacacctgacattgctac 1313 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/58 (86%), Gaps = 2/58 (3%) Strand = Plus / Minus Query: 45 gagcattacattaatcaatcgcagattcacattaaaaatacatccgttactctgttaa 102 |||||||||||||||||||||| | |||||| | |||||||| |||||||||||| Sbjct: 1751 gagcattacattaatcaatcgcgaagtcacat--agaatacatctcttactctgttaa 1696
>ref|NM_101598.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G17370 mRNA, complete cds Length = 1772 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1466 gtagtacatgagctgctgcgc 1446
>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23, complete sequence Length = 158509 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 aacagtacagtacagtaatga 161 ||||||||||||||||||||| Sbjct: 72353 aacagtacagtacagtaatga 72373
>emb|BX817200.1|CNS0AD35 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH92ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1554 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1337 gtagtacatgagctgctgcgc 1317
>emb|BX815458.1|CNS0ACZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS61ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1488 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1371 gtagtacatgagctgctgcgc 1351
>emb|BX815461.1|CNS0ACRK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1573 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1338 gtagtacatgagctgctgcgc 1318
>emb|BX814983.1|CNS0ACXV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1504 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1299 gtagtacatgagctgctgcgc 1279
>gb|AY085705.1| Arabidopsis thaliana clone 17210 mRNA, complete sequence Length = 1629 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 1374 gtagtacatgagctgctgcgc 1354
>gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28G4 genomic sequence, complete sequence Length = 84974 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 63767 gtagtacatgagctgctgcgc 63747
>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I, complete sequence Length = 127968 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtagtacatgagctgctgcgc 342 ||||||||||||||||||||| Sbjct: 5590 gtagtacatgagctgctgcgc 5610
>emb|CR735113.6| Zebrafish DNA sequence from clone CH211-232J17 in linkage group 19, complete sequence Length = 55980 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 tgtcaacagtacagtacagta 157 ||||||||||||||||||||| Sbjct: 54769 tgtcaacagtacagtacagta 54749
>gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, complete sequence Length = 164396 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 acaagcaaatgaaaagctct 210 |||||||||||||||||||| Sbjct: 11716 acaagcaaatgaaaagctct 11697
>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete genome Length = 10189 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 acgccggccattgctactgg 534 |||||||||||||||||||| Sbjct: 8212 acgccggccattgctactgg 8231
>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome Length = 184427 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cgaggccgtgctggccagca 436 |||||||||||||||||||| Sbjct: 18860 cgaggccgtgctggccagca 18841 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,307,626 Number of Sequences: 3902068 Number of extensions: 4307626 Number of successful extensions: 77767 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77704 Number of HSP's gapped (non-prelim): 56 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
