>LRRK2_HUMAN (Q5S007) Leucine-rich repeat serine/threonine-protein kinase 2 (EC|
           2.7.11.1) (Dardarin)
          Length = 2527

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +1

Query: 223 FEKLLVPNQLHEEIVSAVQYDPPR*PIQLASLPI*LALVTELHF 354
           F  +LV N++HE +V AVQ  P    +Q+++L   LAL+TE  F
Sbjct: 282 FFNILVLNEVHEFVVKAVQQYPENAALQISALSC-LALLTETIF 324

>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen
           240 kDa protein) (Mi2-alpha) (Zinc-finger helicase)
           (hZFH)
          Length = 2000

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 367 LSKKGNAALLQVLVRWGDLPAELATWED 284
           + KKGN      LV+W DLP + +TWE+
Sbjct: 641 VDKKGN---YHYLVKWRDLPYDQSTWEE 665

>Y2042_SYNY3 (P73079) Hypothetical protein slr2042|
          Length = 275

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 337 QVLVRWGDLPAELATWED-HTALQKRFPHAADWGQAA 230
           Q+++ WG +  +L  W+D H  +   F H  D G  A
Sbjct: 151 QLILAWGTIAWDLERWQDGHNVIFHEFAHQLDMGDGA 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,111,023
Number of Sequences: 219361
Number of extensions: 1833513
Number of successful extensions: 4334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4330
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)