| Clone Name | rbags21o03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 287 ctcccaggtagccaattcagctggca 312 |||||||||||||||||||| ||||| Sbjct: 6916712 ctcccaggtagccaattcagttggca 6916737 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 ccattgtcagtggtttgggga 430 ||||||||||||||||||||| Sbjct: 3952069 ccattgtcagtggtttgggga 3952049
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0668C05 Length = 142081 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 287 ctcccaggtagccaattcagctggca 312 |||||||||||||||||||| ||||| Sbjct: 40527 ctcccaggtagccaattcagttggca 40552
>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_B03 Length = 108992 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 287 ctcccaggtagccaattcagctggca 312 |||||||||||||||||||| ||||| Sbjct: 72967 ctcccaggtagccaattcagttggca 72992
>gb|DQ125487.1| Toxoplasma gondii structural maintenance of chromosome 4 (SMC4) gene, complete cds Length = 15840 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 ttctcctgtcttcttcatctt 162 ||||||||||||||||||||| Sbjct: 7443 ttctcctgtcttcttcatctt 7423
>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7, complete sequence Length = 194826 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 acttgtaacagagctgcattt 353 ||||||||||||||||||||| Sbjct: 167828 acttgtaacagagctgcattt 167848
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 ccattgtcagtggtttgggga 430 ||||||||||||||||||||| Sbjct: 191181 ccattgtcagtggtttgggga 191161
>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1656_E11 Length = 116211 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 ccattgtcagtggtttgggga 430 ||||||||||||||||||||| Sbjct: 54795 ccattgtcagtggtttgggga 54775
>gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, complete cds Length = 2187 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 attgtcagtggtttggggata 432 ||||||||||||||||||||| Sbjct: 498 attgtcagtggtttggggata 478
>ref|NM_024256.2| Mus musculus beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) (B3gat3), mRNA Length = 1599 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1395 gagaagctgcttgtccccaa 1376
>gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delta locus from bases 501613 to 752736 (section 3 of 5) of the Complete Nucleotide Sequence Length = 251124 Score = 40.1 bits (20), Expect = 7.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 137 ctctgttctcctgtcttcttcatctttc 164 |||||||||||||||||| ||||||||| Sbjct: 177 ctctgttctcctgtcttc-tcatctttc 203
>gb|BC004038.1| Mus musculus beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), mRNA (cDNA clone MGC:7663 IMAGE:3496170), complete cds Length = 1599 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1395 gagaagctgcttgtccccaa 1376
>gb|BC012930.1| Mus musculus beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), mRNA (cDNA clone MGC:21378 IMAGE:4500993), complete cds Length = 1585 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1384 gagaagctgcttgtccccaa 1365
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence Length = 178077 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ccacacttagccactctgttctcc 147 ||||||||| |||||||||||||| Sbjct: 116856 ccacacttacccactctgttctcc 116879
>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence Length = 186195 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ctgaagactggagtatggtc 455 |||||||||||||||||||| Sbjct: 62172 ctgaagactggagtatggtc 62191
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 ccaatcttctccaagatctg 549 |||||||||||||||||||| Sbjct: 262026 ccaatcttctccaagatctg 262007
>gb|AC130819.4| Mus musculus BAC clone RP23-118O2 from chromosome 19, complete sequence Length = 223575 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 212422 gagaagctgcttgtccccaa 212441
>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete sequence Length = 175796 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 159846 gagaagctgcttgtccccaa 159827
>gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 ccacacttagccactctgttctcc 147 ||||||||| |||||||||||||| Sbjct: 7612 ccacacttacccactctgttctcc 7589
>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12 Contains the PPIAL gene for peptidylprolyl isomerase A (cyclophilin A)-like pseudogene, the 5' end of the PTPRT gene for protein tyrosine phosphatase receptor type T, a novel gene and two CpG Islands, complete sequence Length = 177562 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 tgtaaatcttcagtgtccat 413 |||||||||||||||||||| Sbjct: 106103 tgtaaatcttcagtgtccat 106122
>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete Sequence, complete sequence Length = 220143 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 70141 gagaagctgcttgtccccaa 70160
>ref|NM_001000504.1| Rattus norvegicus olfactory receptor 37 (Olr37), mRNA Length = 966 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcctgtcttcttcatctttc 164 |||||||||||||||||||| Sbjct: 90 tcctgtcttcttcatctttc 109
>ref|NM_001000935.1| Rattus norvegicus olfactory receptor 36 (predicted) (Olr36_predicted), mRNA Length = 981 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcctgtcttcttcatctttc 164 |||||||||||||||||||| Sbjct: 90 tcctgtcttcttcatctttc 109
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tttacctggctctgcagcac 185 |||||||||||||||||||| Sbjct: 72671 tttacctggctctgcagcac 72652
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 tcttcttcatctttcatttacctg 173 |||||||||||||||||| ||||| Sbjct: 1028609 tcttcttcatctttcattaacctg 1028632
>dbj|AK144402.1| Mus musculus 8 days neonate male testis cDNA, RIKEN full-length enriched library, clone:G630055H14 product:beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), full insert sequence Length = 1604 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1417 gagaagctgcttgtccccaa 1398
>dbj|AK146264.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730044B11 product:beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), full insert sequence Length = 1498 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1310 gagaagctgcttgtccccaa 1291
>gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section 124 of 201 of the complete genome Length = 13561 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 gttgcttgagctgggactgg 483 |||||||||||||||||||| Sbjct: 10658 gttgcttgagctgggactgg 10677
>gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete sequence Length = 96628 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tggtttggggatagatctga 439 |||||||||||||||||||| Sbjct: 13869 tggtttggggatagatctga 13888
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctcccaggtagccaattcag 306 |||||||||||||||||||| Sbjct: 5939559 ctcccaggtagccaattcag 5939578
>gb|BC002103.1| Mus musculus beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), mRNA (cDNA clone MGC:6591 IMAGE:3485805), complete cds Length = 1473 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gagaagctgcttgtccccaa 245 |||||||||||||||||||| Sbjct: 1262 gagaagctgcttgtccccaa 1243
>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete sequence Length = 166183 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 ttgtaagctgctggaccaat 534 |||||||||||||||||||| Sbjct: 70004 ttgtaagctgctggaccaat 70023
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete sequence Length = 258789 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 ccacacttagccactctgttctcc 147 ||||||||| |||||||||||||| Sbjct: 193369 ccacacttacccactctgttctcc 193346
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctcccaggtagccaattcag 306 |||||||||||||||||||| Sbjct: 82796 ctcccaggtagccaattcag 82815
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 7.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 137 ctctgttctcctgtcttcttcatctttc 164 |||||||||||||||||| ||||||||| Sbjct: 501789 ctctgttctcctgtcttc-tcatctttc 501815 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,999,089 Number of Sequences: 3902068 Number of extensions: 4999089 Number of successful extensions: 91807 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 91675 Number of HSP's gapped (non-prelim): 134 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)