ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22c18 |
|---|---|
| Clone Library Name | barley_pub |
>YID1_SCHPO (Q9UTD8) Hypothetical protein C227.01c in chromosome I| Length = 373 Score = 69.3 bits (168), Expect = 1e-11 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Frame = -2 Query: 658 VFPDQWVSFYRPLWLISGVINSLYSFYWDIKRDWDLSILTRIFMFKSPSTWTSLLYG--- 488 +F + SF LW S INS YSF+WD+ DW L FK P + + +G Sbjct: 236 IFAKKRFSFLWFLWNTSSAINSTYSFWWDVSMDWSLP------FFKQPLSIQNWKFGVRR 289 Query: 487 --RNWVYYWVLGSNLILRCTWTYKLSAHLRHNYLT----VFAITALEMLRRFQWVFFRVE 326 + + V + +LR W ++ + + T +F + LE+ RR WVFFR+E Sbjct: 290 LFPTFTFAVVSAIDFVLRMAWVVRVLPEHQSAFFTTDFGIFIMQFLEVFRRCVWVFFRIE 349 Query: 325 NEWNKMTTKQNFEMSSDMPS 266 E +K N SD+P+ Sbjct: 350 AEASKSLAYVNISDRSDIPT 369
>YAT5_SCHPO (Q10151) Hypothetical protein C1D4.05c in chromosome I| Length = 387 Score = 61.6 bits (148), Expect(2) = 1e-09 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%) Frame = -2 Query: 622 LWLISGVINSLYSFYWDIKRDWDLSILTRIFMFKSPSTWTSLLYGRNWVYYWVLGS--NL 449 LW++S +++S Y+F WD+ DW + F F S+ + R ++ + +G N Sbjct: 290 LWILSALLSSAYTFLWDVFIDWRIR-----FPFHK-----SINHKRFPMFIYAIGCFINF 339 Query: 448 ILRCTWTYKLSAHLR--HNY-LTVFAITALEMLRRFQWVFFRVE 326 ILR TW+ KL L H Y + +F+ LE+LRRF W+FF ++ Sbjct: 340 ILRVTWSMKLHPRLHQFHEYEMGIFSFEMLEILRRFLWLFFHLD 383 Score = 20.8 bits (42), Expect(2) = 1e-09 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = -1 Query: 704 STAFPVIFLSAL 669 +TA PVI+LSA+ Sbjct: 259 ATALPVIYLSAI 270
>ERD1_KLULA (P41771) Protein ERD1| Length = 384 Score = 60.5 bits (145), Expect = 5e-09 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%) Frame = -2 Query: 598 NSLYSFYWDIKRDWDLSILTRIFMFKSPSTWTS-----------LLYGRNWVYYWVLGSN 452 NS YSF+WD+ DW L + + S + S LLY +N YY + + Sbjct: 267 NSAYSFWWDVTMDWKLELFDFVNGDTSVNNNNSSNKADGLLRSILLYRKNAWYYSAMALD 326 Query: 451 LILRCTWTYK-LSAH-LRHNYLTVFAITALEMLRRFQWVFFRVENEW 317 ILR W ++ +S H + + L +F + LE++RR+ W+FF+VE E+ Sbjct: 327 FILRFVWFWEYISGHSVFYGELNIFWLQILEIIRRWIWLFFKVEVEY 373
>PHO1_ARATH (Q8S403) Putative phosphate transporter 1| Length = 782 Score = 59.3 bits (142), Expect = 1e-08 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Frame = -2 Query: 649 DQWVSFYRPLWLISGVINSLYSFYWDIKRDWDLSILTRIFMFKSPSTWTS---LLYGRNW 479 D W++ L+S V+ ++Y YWD +DW L KS + W +L +N+ Sbjct: 653 DLWLTMV----LVSSVVATIYQLYWDFVKDWGL------LNPKSKNPWLRDNLVLRNKNF 702 Query: 478 VYYWVLGSNLILRCTWT-----YKLSAHLRHNYLTVFAITALEMLRRFQWVFFRVENE 320 YY + NL+LR W +++S H L F + +LE++RR W F+RVENE Sbjct: 703 -YYLSIALNLVLRVAWIETIMRFRVSPVQSH--LLDFFLASLEVIRRGHWNFYRVENE 757
>SYG1_YEAST (P40528) Protein SYG1| Length = 902 Score = 57.4 bits (137), Expect = 4e-08 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 12/132 (9%) Frame = -2 Query: 628 RPLWLISGVINSLYSFYWDIKRDWDLS--------ILTRIFMFKSPSTWT--SLLYGRNW 479 R +++ +NS+ + WD+ DW + +L W S + R Sbjct: 673 RTPFIVCATLNSILTSAWDLVMDWSFAHNTTSYNWLLRDDLYLAGKKNWENGSYSFSRKL 732 Query: 478 VYYWVLGSNLILRCTW-TYKLSAH-LRHNYLTVFAITALEMLRRFQWVFFRVENEWNKMT 305 VYY+ + ++++R W Y ++ ++ + +T F + LE+LRRF W+ FRVENE + Sbjct: 733 VYYFAMIWDILIRFEWIVYAIAPQTIQQSAVTSFILALLEVLRRFVWIIFRVENE--HVA 790 Query: 304 TKQNFEMSSDMP 269 F ++ D P Sbjct: 791 NVHLFRVTGDAP 802
>YQL7_SCHPO (Q9UU86) Hypothetical protein C1827.07c in chromosome III| Length = 682 Score = 53.1 bits (126), Expect = 8e-07 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Frame = -2 Query: 631 YRPLWLISGVINSLYSFYWDIKRDWDLSILTRIFMFKSPSTW---TSLLYGRNWVYYWVL 461 YR L+ I +NSL+S+ WDI DW+L + + W + + W Y + Sbjct: 524 YRVLYTIFAGVNSLFSYTWDILMDWNL-------LVRKDGRWQFREHRILKQLWPYIIAM 576 Query: 460 GSNLILRCTWTYK--LSAHLRHNYLTVFAITALEMLRRFQWVFFRVENE 320 N I+R ++ + H++H+ F +T E++RR W RVE+E Sbjct: 577 ILNFIVRSSFIFYCIFPNHIQHSSGISFFVTLAEIMRRCMWNILRVEHE 625
>ERD1_YEAST (P16151) Protein ERD1| Length = 362 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%) Frame = -2 Query: 604 VINSLYSFYWDIKRDWDLSILTRIFMFKSPSTWTSLLYGRNWVYYWVLGSNLILRCTWTY 425 +INS Y+ +WD++ DW L LT + S S + + +Y+ + + +LR W Sbjct: 258 LINSSYTLFWDVRMDWSLDSLTSL-----RSRSKSAVTLKKKMYHSAILVDFLLRFWW-- 310 Query: 424 KLSAHLRHNYLTVFA----------ITALEMLRRFQWVFFRVENEW 317 L +L N V A + E++RR WV F+++ E+ Sbjct: 311 -LWVYLSQNLKLVAADSDYIFFQGEMQYFEVIRRGIWVVFKLDAEY 355
>DNAS1_HORSE (Q4AEE3) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -2 Query: 601 INSLYSFYWDIKRDWDLSILTRIFMFK------SPSTWTSLLYGRNWVYYWVL 461 I+SLY Y D+++ WD+ + + F + S W S+ RN ++W++ Sbjct: 166 IDSLYDVYLDVQQKWDMEDIMLMGDFNAGCSYVTSSQWPSIRLRRNPAFWWLI 218
>DNAS1_SHEEP (P11937) Deoxyribonuclease-1 (EC 3.1.21.1) (Deoxyribonuclease I)| (DNase I) Length = 260 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -2 Query: 601 INSLYSFYWDIKRDWDLSILTRIFMFK------SPSTWTSLLYGRNWVYYWVL 461 INSLY Y D+++ WDL+ + + F + S W+S+ + + W++ Sbjct: 144 INSLYDVYLDVQQKWDLNDIMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLI 196
>ENV_VILVK (P35954) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 983 Score = 31.2 bits (69), Expect = 3.2 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 448 ILRCTWTYKLSAHLRHNYLTVFAITALEMLRRFQWVFFRVENEWN 314 I R TW ++ RHN+ T+ IT L +L +QW+ EN WN Sbjct: 912 IWRATWWAWKTSPWRHNWRTMPYITLLPILVIWQWM---EENGWN 953
>ENV_VILV (P03379) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 982 Score = 31.2 bits (69), Expect = 3.2 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 448 ILRCTWTYKLSAHLRHNYLTVFAITALEMLRRFQWVFFRVENEWN 314 I R TW ++ RHN+ T+ IT L +L +QW+ EN WN Sbjct: 911 IWRATWWAWKTSPWRHNWRTMPYITLLPILVIWQWM---EENGWN 952
>ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 991 Score = 31.2 bits (69), Expect = 3.2 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 448 ILRCTWTYKLSAHLRHNYLTVFAITALEMLRRFQWVFFRVENEWN 314 I R TW ++ RHN+ T+ IT L +L +QW+ EN WN Sbjct: 920 IWRATWWAWKTSPWRHNWRTMPYITLLPILVIWQWM---EENGWN 961
>ENV_VILV1 (P23422) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 989 Score = 30.8 bits (68), Expect = 4.2 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 448 ILRCTWTYKLSAHLRHNYLTVFAITALEMLRRFQWVFFRVENEWN 314 I R TW ++ RH++ T+ IT L ML +QW+ EN WN Sbjct: 918 IWRATWWAWKTSPWRHSWRTMPYITLLPMLVIWQWM---EENGWN 959
>DPO4_PASMU (Q9CNG4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 355 Score = 30.4 bits (67), Expect = 5.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 575 PVEGIERIYNTRNKPEGPVKANPLIREYMIL*VPIKKSPGM 697 P++ + +I + +NKP G P E+ I +P+KK PG+ Sbjct: 144 PLKFLAKIASEQNKPNGQFVIKPEQIEHFIANLPLKKIPGV 184
>ST1A1_CANFA (Q29476) Sulfotransferase 1A1 (EC 2.8.2.1) (Aryl sulfotransferase)| (Phenol sulfotransferase) (Phenol-sulfating phenol sulfotransferase) (P-PST) Length = 295 Score = 30.0 bits (66), Expect = 7.2 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -2 Query: 682 FYRHSKYHVFPDQWVSFYRPLWLISGVINSLYSFYWDIKRDWDLS 548 FYR +K H PD W SF ++G + S S+Y ++ W+LS Sbjct: 142 FYRMAKVHPDPDTWDSFLEK--FMAGEV-SYGSWYQHVQEWWELS 183
>FAD3D_ARATH (P48622) Temperature-sensitive omega-3 fatty acid desaturase,| chloroplast precursor (EC 1.14.19.-) Length = 435 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -2 Query: 685 FFYRHS-KYHVFPDQWVSFYRPLWLISGVINSLYSFYWDIKRDWDLSILTRIFMFKSPS 512 F+ +H+ + P F PL S ++NS Y FY R+W L++ T + +SPS Sbjct: 17 FYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFY-SKTRNWALNVATPLTTLQSPS 74
>COAA_BRAJA (Q89WM2) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid| kinase) Length = 318 Score = 29.6 bits (65), Expect = 9.4 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 703 RQHSR*FFYRHSKYHVFPDQWVSFYRPLWLISGVINSL 590 R+H R Y H Y + P+QWV +P LI +N L Sbjct: 168 RRHVRAPVYSHLTYDIVPNQWVEIDQPDILIVEGVNVL 205
>DNAS1_CANFA (Q767J3) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 284 Score = 29.6 bits (65), Expect = 9.4 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = -2 Query: 601 INSLYSFYWDIKRDWDLSILTRIFMFK------SPSTWTSLLYGRNWVYYWVL 461 I++LY Y D++ WDL + + F + S W+S+ N + W++ Sbjct: 166 IDALYDVYLDVQHKWDLEDIVLMGDFNAGCSYVAASQWSSIRLRTNPAFQWLI 218
>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)| Length = 2842 Score = 29.6 bits (65), Expect = 9.4 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Frame = +1 Query: 316 STHSQRGRKPTETASAFPKLLSQTL*GSCAEDAPTACTSMCS---------EE*GCCLTP 468 S+ + G+ P TA P + +T+ C ED P C S CS +E GC T Sbjct: 1232 SSAQRNGQTPKGTACKVPSINQETMQTYCVEDTP-ICFSRCSSLSSLSSAEDEIGCDQTT 1290 Query: 469 SNTPSS 486 S+ Sbjct: 1291 QEADSA 1296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,404,288 Number of Sequences: 219361 Number of extensions: 2220609 Number of successful extensions: 5326 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5304 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
