ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 438 e-119
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 216 7e-53
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 216 7e-53
4emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 216 7e-53
5emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306... 157 6e-35
6gb|DQ183089.1| Zea mays clone A-RGA21 resistance gene analog-lik... 111 3e-21
7dbj|AP004972.1| Lotus japonicus genomic DNA, chromosome 3, clone... 64 7e-07
8ref|NM_013159.1| Rattus norvegicus insulin degrading enzyme (Ide... 44 0.62
9emb|X67269.1|RNINSDEGM R.norvegicus mRNA for insuline-degrading ... 44 0.62
10ref|NM_122963.3| Arabidopsis thaliana unknown protein AT5G35730 ... 42 2.4
11ref|XM_954205.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.4
12ref|XM_328913.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.4
13gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 42 2.4
14gb|AY070048.1| Arabidopsis thaliana unknown protein (At5g35730) ... 42 2.4
15emb|BX832491.1|CNS09ZSV Arabidopsis thaliana Full-length cDNA Co... 42 2.4
16emb|BX831502.1|CNS09ZSZ Arabidopsis thaliana Full-length cDNA Co... 42 2.4
17emb|BX829787.1|CNS09ZZQ Arabidopsis thaliana Full-length cDNA Co... 42 2.4
18gb|AY086064.1| Arabidopsis thaliana clone 20919 mRNA, complete s... 42 2.4
19dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.4
20emb|AJ337404.1|HSA337404 Homo sapiens genomic sequence surroundi... 42 2.4
21gb|BT001971.1| Arabidopsis thaliana clone U18818 unknown protein... 42 2.4
22gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 9.6
23ref|XM_464427.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.6
24gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, co... 40 9.6
25gb|AC024211.1| Caenorhabditis elegans cosmid Y76B12C, complete s... 40 9.6
26gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete s... 40 9.6
27emb|AL845289.3| Human DNA sequence from clone RP11-15J6 on chrom... 40 9.6
28emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on ch... 40 9.6
29emb|AL365277.23| Human DNA sequence from clone RP11-69E11 on chr... 40 9.6
30emb|X69955.2|GM4CL16 Glycine max mRNA for 4-coumarate:CoA ligase... 40 9.6
31dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 9.6
32gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, comp... 40 9.6
33gb|AF002258.1| Glycine max 4-coumarate:CoA ligase isoenzyme 3, m... 40 9.6
34gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence 40 9.6
35gb|AC020703.7| Homo sapiens BAC clone RP11-259G7 from 4, complet... 40 9.6
36gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence 40 9.6
37gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, comple... 40 9.6
38ref|NM_067755.3| Caenorhabditis elegans Y76B12C.2 (Y76B12C.2) mR... 40 9.6
39ref|XM_393984.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 9.6
40dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
41gb|AC102496.7| Mus musculus chromosome 18, clone RP24-567O18, co... 40 9.6
42gb|AC027613.6| Homo sapiens BAC clone RP11-166J5 from 4, complet... 40 9.6
43emb|BX829738.1|CNS0A024 Arabidopsis thaliana Full-length cDNA Co... 40 9.6
44emb|BX831256.1|CNS09ZD3 Arabidopsis thaliana Full-length cDNA Co... 40 9.6
45gb|AC105399.3| Homo sapiens BAC clone RP11-715P7 from 2, complet... 40 9.6
46gb|AF002257.1| Glycine max 4-coumarate:CoA ligase isoenzyme 3 (G... 40 9.6
47dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
48dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
49dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.6
50gb|AC024872.1|AC024872 Caenorhabditis elegans clone Y76B12C, com... 40 9.6
51gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p... 40 9.6
52dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
53emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 9.6
54emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 9.6
55emb|AL591977.1| Listeria monocytogenes strain EGD, complete geno... 40 9.6
56gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 9.6
57dbj|AB010001.1| Synechococcus sp. gene for HtpG, complete cds 40 9.6 
>dbj|AK065252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J09, full
            insert sequence
          Length = 1976

 Score =  438 bits (221), Expect = e-119
 Identities = 389/445 (87%)
 Strand = Plus / Minus

                                                                        
Query: 223  ttcatactgtatgactactagactccagtagcctgtctgattctgagggcatgtcggatg 282
            ||||||||||||||||| | || ||||  |||||||||  ||| ||||||||||| ||||
Sbjct: 1691 ttcatactgtatgactatttgaatccaaaagcctgtctccttcagagggcatgtcagatg 1632

                                                                        
Query: 283  acatttcaaaattttgcttggttgtcatcttgttccactcattctcaacgcggaagaaaa 342
            ||||||| | | | ||||||| |||||||||||||||||| ||||| || |||||||| |
Sbjct: 1631 acatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaagaaca 1572

                                                                        
Query: 343  cccactgaaaccgcctcagcatttccaaagctgttatcgcaaacactgtgaggtagttgt 402
            ||||||||||||||||||  |||||||  |||| ||| | ||||||||| ||||||||||
Sbjct: 1571 cccactgaaaccgcctcaatatttccagcgctgctattgtaaacactgtcaggtagttgt 1512

                                                                        
Query: 403  gccgaagatgcgccgacagcttgtacgtccatgtgcagcgaagaatgaggttgctgccta 462
            |||||||||| || || ||||||||||||||||| ||||| || |  || |||||| |||
Sbjct: 1511 gccgaagatgtgctgaaagcttgtacgtccatgtacagcggagcacaagattgctggcta 1452

                                                                        
Query: 463  acacccagtaatacacccagttccgcccataaagaagacttgtccatgtgcttgggcttt 522
            ||||||||||||| |||||| || |||||||||||||  | |||||||| |||||| |||
Sbjct: 1451 acacccagtaatatacccagatctgcccataaagaaggttagtccatgtacttgggtttt 1392

                                                                        
Query: 523  tgaacatgaaaatcctggttaaaatgctcaaatcccaatcacgctttatatcccagtaga 582
            |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 1391 tgaacatgaaaatcctagttaagatgctcaaatcccaatctcgctttatatcccagtaaa 1332

                                                                        
Query: 583  aggaatagagcgaatttataacacccgaaataagccagaggggccggtaaaagctaaccc 642
            ||||||| ||||||||||||||||  || |||||||||||||| || |||||||||||||
Sbjct: 1331 aggaatacagcgaatttataacactggacataagccagaggggtcgataaaagctaaccc 1272

                                     
Query: 643  actgatcagggaatacatgatactt 667
            |||  ||||||||||||||||||||
Sbjct: 1271 acttgtcagggaatacatgatactt 1247
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  216 bits (109), Expect = 7e-53
 Identities = 217/253 (85%)
 Strand = Plus / Plus

                                                                            
Query: 223      ttcatactgtatgactactagactccagtagcctgtctgattctgagggcatgtcggatg 282
                ||||||||||||||||| | || ||||  |||||||||  ||| ||||||||||| ||||
Sbjct: 25009720 ttcatactgtatgactatttgaatccaaaagcctgtctccttcagagggcatgtcagatg 25009779

                                                                            
Query: 283      acatttcaaaattttgcttggttgtcatcttgttccactcattctcaacgcggaagaaaa 342
                ||||||| | | | ||||||| |||||||||||||||||| ||||| || |||||||| |
Sbjct: 25009780 acatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaagaaca 25009839

                                                                            
Query: 343      cccactgaaaccgcctcagcatttccaaagctgttatcgcaaacactgtgaggtagttgt 402
                ||||||||||||||||||  |||||||  |||| ||| | ||||||||| ||||||||||
Sbjct: 25009840 cccactgaaaccgcctcaatatttccagcgctgctattgtaaacactgtcaggtagttgt 25009899

                                                                            
Query: 403      gccgaagatgcgccgacagcttgtacgtccatgtgcagcgaagaatgaggttgctgccta 462
                |||||||||| || || ||||||||||||||||| ||||| || |  || |||||| |||
Sbjct: 25009900 gccgaagatgtgctgaaagcttgtacgtccatgtacagcggagcacaagattgctggcta 25009959

                             
Query: 463      acacccagtaata 475
                |||||||||||||
Sbjct: 25009960 acacccagtaata 25009972



 Score =  157 bits (79), Expect = 6e-35
 Identities = 109/119 (91%)
 Strand = Plus / Plus

                                                                            
Query: 549      ctcaaatcccaatcacgctttatatcccagtagaaggaatagagcgaatttataacaccc 608
                |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  
Sbjct: 25010216 ctcaaatcccaatctcgctttatatcccagtaaaaggaatacagcgaatttataacactg 25010275

                                                                           
Query: 609      gaaataagccagaggggccggtaaaagctaacccactgatcagggaatacatgatactt 667
                || |||||||||||||| || ||||||||||||||||  ||||||||||||||||||||
Sbjct: 25010276 gacataagccagaggggtcgataaaagctaacccacttgtcagggaatacatgatactt 25010334



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 477      acccagttccgcccataaagaagacttgtccatgtgcttgggcttttgaacatgaaaatc 536
                |||||| || |||||||||||||  | |||||||| |||||| |||||||||||||||||
Sbjct: 25010056 acccagatctgcccataaagaaggttagtccatgtacttgggtttttgaacatgaaaatc 25010115

                              
Query: 537      ctggttaaaatgct 550
                || ||||| |||||
Sbjct: 25010116 ctagttaagatgct 25010129
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  216 bits (109), Expect = 7e-53
 Identities = 217/253 (85%)
 Strand = Plus / Plus

                                                                            
Query: 223      ttcatactgtatgactactagactccagtagcctgtctgattctgagggcatgtcggatg 282
                ||||||||||||||||| | || ||||  |||||||||  ||| ||||||||||| ||||
Sbjct: 24937926 ttcatactgtatgactatttgaatccaaaagcctgtctccttcagagggcatgtcagatg 24937985

                                                                            
Query: 283      acatttcaaaattttgcttggttgtcatcttgttccactcattctcaacgcggaagaaaa 342
                ||||||| | | | ||||||| |||||||||||||||||| ||||| || |||||||| |
Sbjct: 24937986 acatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaagaaca 24938045

                                                                            
Query: 343      cccactgaaaccgcctcagcatttccaaagctgttatcgcaaacactgtgaggtagttgt 402
                ||||||||||||||||||  |||||||  |||| ||| | ||||||||| ||||||||||
Sbjct: 24938046 cccactgaaaccgcctcaatatttccagcgctgctattgtaaacactgtcaggtagttgt 24938105

                                                                            
Query: 403      gccgaagatgcgccgacagcttgtacgtccatgtgcagcgaagaatgaggttgctgccta 462
                |||||||||| || || ||||||||||||||||| ||||| || |  || |||||| |||
Sbjct: 24938106 gccgaagatgtgctgaaagcttgtacgtccatgtacagcggagcacaagattgctggcta 24938165

                             
Query: 463      acacccagtaata 475
                |||||||||||||
Sbjct: 24938166 acacccagtaata 24938178



 Score =  157 bits (79), Expect = 6e-35
 Identities = 109/119 (91%)
 Strand = Plus / Plus

                                                                            
Query: 549      ctcaaatcccaatcacgctttatatcccagtagaaggaatagagcgaatttataacaccc 608
                |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  
Sbjct: 24938422 ctcaaatcccaatctcgctttatatcccagtaaaaggaatacagcgaatttataacactg 24938481

                                                                           
Query: 609      gaaataagccagaggggccggtaaaagctaacccactgatcagggaatacatgatactt 667
                || |||||||||||||| || ||||||||||||||||  ||||||||||||||||||||
Sbjct: 24938482 gacataagccagaggggtcgataaaagctaacccacttgtcagggaatacatgatactt 24938540



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 477      acccagttccgcccataaagaagacttgtccatgtgcttgggcttttgaacatgaaaatc 536
                |||||| || |||||||||||||  | |||||||| |||||| |||||||||||||||||
Sbjct: 24938262 acccagatctgcccataaagaaggttagtccatgtacttgggtttttgaacatgaaaatc 24938321

                              
Query: 537      ctggttaaaatgct 550
                || ||||| |||||
Sbjct: 24938322 ctagttaagatgct 24938335
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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  216 bits (109), Expect = 7e-53
 Identities = 217/253 (85%)
 Strand = Plus / Minus

                                                                         
Query: 223   ttcatactgtatgactactagactccagtagcctgtctgattctgagggcatgtcggatg 282
             ||||||||||||||||| | || ||||  |||||||||  ||| ||||||||||| ||||
Sbjct: 97447 ttcatactgtatgactatttgaatccaaaagcctgtctccttcagagggcatgtcagatg 97388

                                                                         
Query: 283   acatttcaaaattttgcttggttgtcatcttgttccactcattctcaacgcggaagaaaa 342
             ||||||| | | | ||||||| |||||||||||||||||| ||||| || |||||||| |
Sbjct: 97387 acatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaagaaca 97328

                                                                         
Query: 343   cccactgaaaccgcctcagcatttccaaagctgttatcgcaaacactgtgaggtagttgt 402
             ||||||||||||||||||  |||||||  |||| ||| | ||||||||| ||||||||||
Sbjct: 97327 cccactgaaaccgcctcaatatttccagcgctgctattgtaaacactgtcaggtagttgt 97268

                                                                         
Query: 403   gccgaagatgcgccgacagcttgtacgtccatgtgcagcgaagaatgaggttgctgccta 462
             |||||||||| || || ||||||||||||||||| ||||| || |  || |||||| |||
Sbjct: 97267 gccgaagatgtgctgaaagcttgtacgtccatgtacagcggagcacaagattgctggcta 97208

                          
Query: 463   acacccagtaata 475
             |||||||||||||
Sbjct: 97207 acacccagtaata 97195



 Score =  157 bits (79), Expect = 6e-35
 Identities = 109/119 (91%)
 Strand = Plus / Minus

                                                                         
Query: 549   ctcaaatcccaatcacgctttatatcccagtagaaggaatagagcgaatttataacaccc 608
             |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  
Sbjct: 96951 ctcaaatcccaatctcgctttatatcccagtaaaaggaatacagcgaatttataacactg 96892

                                                                        
Query: 609   gaaataagccagaggggccggtaaaagctaacccactgatcagggaatacatgatactt 667
             || |||||||||||||| || ||||||||||||||||  ||||||||||||||||||||
Sbjct: 96891 gacataagccagaggggtcgataaaagctaacccacttgtcagggaatacatgatactt 96833



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 477   acccagttccgcccataaagaagacttgtccatgtgcttgggcttttgaacatgaaaatc 536
             |||||| || |||||||||||||  | |||||||| |||||| |||||||||||||||||
Sbjct: 97111 acccagatctgcccataaagaaggttagtccatgtacttgggtttttgaacatgaaaatc 97052

                           
Query: 537   ctggttaaaatgct 550
             || ||||| |||||
Sbjct: 97051 ctagttaagatgct 97038
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>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 121563

 Score =  157 bits (79), Expect = 6e-35
 Identities = 109/119 (91%)
 Strand = Plus / Minus

                                                                          
Query: 549    ctcaaatcccaatcacgctttatatcccagtagaaggaatagagcgaatttataacaccc 608
              |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  
Sbjct: 121263 ctcaaatcccaatctcgctttatatcccagtaaaaggaatacagcgaatttataacactg 121204

                                                                         
Query: 609    gaaataagccagaggggccggtaaaagctaacccactgatcagggaatacatgatactt 667
              || |||||||||||||| || ||||||||||||||||  ||||||||||||||||||||
Sbjct: 121203 gacataagccagaggggtcgataaaagctaacccacttgtcagggaatacatgatactt 121145



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 477    acccagttccgcccataaagaagacttgtccatgtgcttgggcttttgaacatgaaaatc 536
              |||||| || |||||||||||||  | |||||||| |||||| |||||||||||||||||
Sbjct: 121423 acccagatctgcccataaagaaggttagtccatgtacttgggtttttgaacatgaaaatc 121364

                            
Query: 537    ctggttaaaatgct 550
              || ||||| |||||
Sbjct: 121363 ctagttaagatgct 121350



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                      
Query: 420    agcttgtacgtccatgtgcagcgaagaatgaggttgctgcctaacacccagtaata 475
              ||||||||||||||||| ||||| || |  || |||||| ||||||||||||||||
Sbjct: 121562 agcttgtacgtccatgtacagcggagcacaagattgctggctaacacccagtaata 121507
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>gb|DQ183089.1| Zea mays clone A-RGA21 resistance gene analog-like gene, partial
           sequence
          Length = 478

 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Plus

                                                                       
Query: 549 ctcaaatcccaatcacgctttatatcccagtagaaggaatagagcgaatttataacaccc 608
           |||||| ||||||| |||||||||||||||||||||||||| || |||||||  ||||  
Sbjct: 107 ctcaaaccccaatctcgctttatatcccagtagaaggaatacagtgaatttacgacacta 166

                                                       
Query: 609 gaaataagccagaggggccggtaaaagctaacccactgatcagg 652
           || ||||||||| |||||||||| |||| |||||||||||||||
Sbjct: 167 gagataagccaggggggccggtagaagccaacccactgatcagg 210
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>dbj|AP004972.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT41A07, TM0155a,
             complete sequence
          Length = 32123

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 384   aacactgtgaggtagttgtgccgaagatgcgccgacagcttgtacgtccatgtgca 439
             ||||||||||||||||| || |||||||| || || |||||||| |||||||||||
Sbjct: 19107 aacactgtgaggtagttatggcgaagatgggcagatagcttgtatgtccatgtgca 19052
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>ref|NM_013159.1| Rattus norvegicus insulin degrading enzyme (Ide), mRNA
          Length = 4276

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 177 atgaaaagaatgtgatgaatga 198
           ||||||||||||||||||||||
Sbjct: 584 atgaaaagaatgtgatgaatga 605
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>emb|X67269.1|RNINSDEGM R.norvegicus mRNA for insuline-degrading enzyme
          Length = 4276

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 177 atgaaaagaatgtgatgaatga 198
           ||||||||||||||||||||||
Sbjct: 584 atgaaaagaatgtgatgaatga 605
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>ref|NM_122963.3| Arabidopsis thaliana unknown protein AT5G35730 mRNA, complete cds
          Length = 1761

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1529 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1470

                                                 
Query: 369  aaagctgttatcgcaaacactgtgaggtagttgtgcc 405
            |  ||||| || |  ||||| || | |||||||||||
Sbjct: 1469 atcgctgtcattgtgaacaccgttatgtagttgtgcc 1433
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>ref|XM_954205.1| Neurospora crassa OR74A hypothetical protein (NCU08208.1) partial
           mRNA
          Length = 573

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 50  catgctccgcgccaacaatttcagc 74
           |||||||||||||||| ||||||||
Sbjct: 192 catgctccgcgccaaccatttcagc 216
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>ref|XM_328913.1| Neurospora crassa OR74A hypothetical protein (NCU08208.1) partial
           mRNA
          Length = 573

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 50  catgctccgcgccaacaatttcagc 74
           |||||||||||||||| ||||||||
Sbjct: 192 catgctccgcgccaaccatttcagc 216
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      attgctgtttattatttatgt 23
              |||||||||||||||||||||
Sbjct: 923773 attgctgtttattatttatgt 923793
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>gb|AY070048.1| Arabidopsis thaliana unknown protein (At5g35730) mRNA, complete cds
          Length = 1669

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1519 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1460

                                                 
Query: 369  aaagctgttatcgcaaacactgtgaggtagttgtgcc 405
            |  ||||| || |  ||||| || | |||||||||||
Sbjct: 1459 atcgctgtcattgtgaacaccgttatgtagttgtgcc 1423
to top
>emb|BX832491.1|CNS09ZSV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH76ZG03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1683

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1472 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1413

             
Query: 369  a 369
            |
Sbjct: 1412 a 1412
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>emb|BX831502.1|CNS09ZSZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH11ZC01 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1725

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1530 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1471

             
Query: 369  a 369
            |
Sbjct: 1470 a 1470
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>emb|BX829787.1|CNS09ZZQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZB02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1657

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1496 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1437

             
Query: 369  a 369
            |
Sbjct: 1436 a 1436
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>gb|AY086064.1| Arabidopsis thaliana clone 20919 mRNA, complete sequence
          Length = 1717

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1510 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1451

                                                 
Query: 369  aaagctgttatcgcaaacactgtgaggtagttgtgcc 405
            |  ||||| || |  ||||| || | |||||||||||
Sbjct: 1450 atcgctgtcattgtgaacaccgttatgtagttgtgcc 1414
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>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
          Length = 87210

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                         
Query: 309   atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
             |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 42645 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 42586

                                                  
Query: 369   aaagctgttatcgcaaacactgtgaggtagttgtgcc 405
             |  ||||| || |  ||||| || | |||||||||||
Sbjct: 42585 atcgctgtcattgtgaacaccgttatgtagttgtgcc 42549
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>emb|AJ337404.1|HSA337404 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-RM8RS
          Length = 775

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 3   attgctgtttattatttatgt 23
           |||||||||||||||||||||
Sbjct: 461 attgctgtttattatttatgt 481
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>gb|BT001971.1| Arabidopsis thaliana clone U18818 unknown protein (At5g35730) mRNA,
            complete cds
          Length = 1405

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttgttccactcattctcaacgcggaagaaaacccactgaaaccgcctcagcatttcc 368
            |||||||||||||||||||| || | ||| || ||||| ||||| || |||| ||| |||
Sbjct: 1295 atcttgttccactcattctctactctgaaaaatacccattgaaatcgtctcaacatctcc 1236

                                                 
Query: 369  aaagctgttatcgcaaacactgtgaggtagttgtgcc 405
            |  ||||| || |  ||||| || | |||||||||||
Sbjct: 1235 atcgctgtcattgtgaacaccgttatgtagttgtgcc 1199
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 512     gcttgggcttttgaacatga 531
               ||||||||||||||||||||
Sbjct: 2729350 gcttgggcttttgaacatga 2729369
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>ref|XM_464427.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3544

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  tcggatgacatttcaaaatt 295
            ||||||||||||||||||||
Sbjct: 1207 tcggatgacatttcaaaatt 1226
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>gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, complete sequence
          Length = 195116

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 agtagcctgtctgattctga 268
           ||||||||||||||||||||
Sbjct: 473 agtagcctgtctgattctga 454
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>gb|AC024211.1| Caenorhabditis elegans cosmid Y76B12C, complete sequence
          Length = 76485

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    caacaatttcagcttcttct 81
             ||||||||||||||||||||
Sbjct: 23900 caacaatttcagcttcttct 23881
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>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence
          Length = 31404

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    caacaatttcagcttcttct 81
             ||||||||||||||||||||
Sbjct: 27739 caacaatttcagcttcttct 27720
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>emb|AL845289.3| Human DNA sequence from clone RP11-15J6 on chromosome 1 Contains
           the 5' end of the PABPC4 gene for cytoplasmic 4
           (inducible form) poly(A) binding protein, part of a
           novel gene and a CpG island, complete sequence
          Length = 16269

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 578 gtagaaggaatagagcgaatttat 601
           ||||||||||||||| ||||||||
Sbjct: 833 gtagaaggaatagagtgaatttat 856
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>emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on chromosome 13, complete
              sequence
          Length = 161317

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ctcagcatttccaaagctgt 376
              ||||||||||||||||||||
Sbjct: 138490 ctcagcatttccaaagctgt 138471
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>emb|AL365277.23| Human DNA sequence from clone RP11-69E11 on chromosome 1 Contains the 3'
              end of the MACF1 gene for microtubule-actin crosslinking
              factor 1, the BMP8A gene for bone morphogenetic protein 8A,
              a 3-oxoacid CoA transferase 2 (OXCT2) pseudogene, a novel
              gene, a peptidylprolyl isomerase E (cyclophilin E) (PPIE)
              pseudogene, the 3' end of the PABPC4 gene for cytoplasmic 4
              (inducible form) poly(A) binding protein, part of a novel
              gene and two CpG islands, complete sequence
          Length = 115968

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 578    gtagaaggaatagagcgaatttat 601
              ||||||||||||||| ||||||||
Sbjct: 114801 gtagaaggaatagagtgaatttat 114824
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>emb|X69955.2|GM4CL16 Glycine max mRNA for 4-coumarate:CoA ligase (4CL4 gene)
          Length = 1941

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  tgtccatgtgcttgggcttt 522
            ||||||||||||||||||||
Sbjct: 1112 tgtccatgtgcttgggcttt 1131
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 62      caacaatttcagcttcttct 81
               ||||||||||||||||||||
Sbjct: 2432174 caacaatttcagcttcttct 2432155
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>gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, complete sequence
          Length = 158817

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 499   gacttgtccatgtgcttgggcttt 522
             ||||||||||||||| ||||||||
Sbjct: 19626 gacttgtccatgtgcctgggcttt 19649
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>gb|AF002258.1| Glycine max 4-coumarate:CoA ligase isoenzyme 3, mRNA, complete cds
          Length = 1907

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  tgtccatgtgcttgggcttt 522
            ||||||||||||||||||||
Sbjct: 1103 tgtccatgtgcttgggcttt 1122
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>gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence
          Length = 174691

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    cctggttaaaatgctcaaat 555
              ||||||||||||||||||||
Sbjct: 166863 cctggttaaaatgctcaaat 166882
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>gb|AC020703.7| Homo sapiens BAC clone RP11-259G7 from 4, complete sequence
          Length = 201105

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     cattgctgtttattatttat 21
             ||||||||||||||||||||
Sbjct: 30051 cattgctgtttattatttat 30032
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>gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence
          Length = 151321

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   cctggttaaaatgctcaaat 555
             ||||||||||||||||||||
Sbjct: 99079 cctggttaaaatgctcaaat 99060
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>gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, complete sequence
          Length = 188534

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     cattgctgtttattatttat 21
             ||||||||||||||||||||
Sbjct: 75899 cattgctgtttattatttat 75918
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>ref|NM_067755.3| Caenorhabditis elegans Y76B12C.2 (Y76B12C.2) mRNA, complete cds
          Length = 3760

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  caacaatttcagcttcttct 81
           ||||||||||||||||||||
Sbjct: 262 caacaatttcagcttcttct 243
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>ref|XM_393984.2| PREDICTED: Apis mellifera similar to ENSANGP00000019879 (LOC410505),
            mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  agtagcctgtctgattctga 268
            ||||||||||||||||||||
Sbjct: 1073 agtagcctgtctgattctga 1054
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     tcggatgacatttcaaaatt 295
               ||||||||||||||||||||
Sbjct: 5148344 tcggatgacatttcaaaatt 5148363
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>gb|AC102496.7| Mus musculus chromosome 18, clone RP24-567O18, complete sequence
          Length = 139461

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   agtagcctgtctgattctga 268
             ||||||||||||||||||||
Sbjct: 27810 agtagcctgtctgattctga 27791
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>gb|AC027613.6| Homo sapiens BAC clone RP11-166J5 from 4, complete sequence
          Length = 154163

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   aaattttgcttggttgtcat 310
             ||||||||||||||||||||
Sbjct: 76734 aaattttgcttggttgtcat 76753
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>emb|BX829738.1|CNS0A024 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB32ZC10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1566

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  atcttgttccactcattctc 328
            ||||||||||||||||||||
Sbjct: 1483 atcttgttccactcattctc 1464
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>emb|BX831256.1|CNS09ZD3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS72ZB09 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1660

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  atcttgttccactcattctc 328
            ||||||||||||||||||||
Sbjct: 1461 atcttgttccactcattctc 1442
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>gb|AC105399.3| Homo sapiens BAC clone RP11-715P7 from 2, complete sequence
          Length = 172435

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     attgctgtttattatttatg 22
             ||||||||||||||||||||
Sbjct: 18615 attgctgtttattatttatg 18634
to top
>gb|AF002257.1| Glycine max 4-coumarate:CoA ligase isoenzyme 3 (Gm4CL-3) gene,
            complete cds
          Length = 5704

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  tgtccatgtgcttgggcttt 522
            ||||||||||||||||||||
Sbjct: 4458 tgtccatgtgcttgggcttt 4477
to top
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0453H10
          Length = 133464

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tcggatgacatttcaaaatt 295
              ||||||||||||||||||||
Sbjct: 108842 tcggatgacatttcaaaatt 108861
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>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0437H03
          Length = 170173

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   tcggatgacatttcaaaatt 295
             ||||||||||||||||||||
Sbjct: 41797 tcggatgacatttcaaaatt 41816
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>dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMM17
          Length = 80733

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gcattgctgtttattattta 20
             ||||||||||||||||||||
Sbjct: 10694 gcattgctgtttattattta 10713
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>gb|AC024872.1|AC024872 Caenorhabditis elegans clone Y76B12C, complete sequence
          Length = 76485

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    caacaatttcagcttcttct 81
             ||||||||||||||||||||
Sbjct: 23900 caacaatttcagcttcttct 23881
to top
>gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p15.2, complete sequence
          Length = 235141

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      cattgctgtttattatttat 21
              ||||||||||||||||||||
Sbjct: 232128 cattgctgtttattatttat 232109
to top
>dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H24, full
            insert sequence
          Length = 3544

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  tcggatgacatttcaaaatt 295
            ||||||||||||||||||||
Sbjct: 1207 tcggatgacatttcaaaatt 1226
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   gacatttcaaaattttgcttggtt 305
             |||||||||||||||| |||||||
Sbjct: 87878 gacatttcaaaattttacttggtt 87901
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
              complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    gacatttcaaaattttgcttggtt 305
              |||||||||||||||| |||||||
Sbjct: 119807 gacatttcaaaattttacttggtt 119830
to top
>emb|AL591977.1| Listeria monocytogenes strain EGD, complete genome, segment 5/12
          Length = 270050

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 531   aaaatcctggttaaaatgct 550
             ||||||||||||||||||||
Sbjct: 79539 aaaatcctggttaaaatgct 79520
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      caacaatttcagcttcttct 81
               ||||||||||||||||||||
Sbjct: 1884877 caacaatttcagcttcttct 1884896
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>dbj|AB010001.1| Synechococcus sp. gene for HtpG, complete cds
          Length = 2810

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   caacaatttcagcttcttct 81
            ||||||||||||||||||||
Sbjct: 1959 caacaatttcagcttcttct 1940


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,210,371
Number of Sequences: 3902068
Number of extensions: 6210371
Number of successful extensions: 123579
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123364
Number of HSP's gapped (non-prelim): 215
length of query: 704
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 681
effective length of database: 17,143,297,704
effective search space: 11674585736424
effective search space used: 11674585736424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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