ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154226.3| Mus musculus BAC clone RP24-353J14 from chromosom... 42 0.76
2gb|AC154355.1| Mus musculus BAC clone RP23-220N4 from 13, comple... 42 0.76
3emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chr... 42 0.76
4gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome ... 40 3.0
5gb|AC016023.8| Drosophila melanogaster clone BACR16F16, complete... 40 3.0
6emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-... 40 3.0
7gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 11... 40 3.0
8gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosom... 40 3.0

>gb|AC154226.3| Mus musculus BAC clone RP24-353J14 from chromosome 13, complete
             sequence
          Length = 196991

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   atcctgtgtcacaatcaccat 169
             |||||||||||||||||||||
Sbjct: 29464 atcctgtgtcacaatcaccat 29444



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>gb|AC154355.1| Mus musculus BAC clone RP23-220N4 from 13, complete sequence
          Length = 168447

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   atcctgtgtcacaatcaccat 169
             |||||||||||||||||||||
Sbjct: 72829 atcctgtgtcacaatcaccat 72809



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>emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chromosome 13, complete
              sequence
          Length = 199355

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    atcctgtgtcacaatcaccat 169
              |||||||||||||||||||||
Sbjct: 131285 atcctgtgtcacaatcaccat 131265



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>gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome 8, complete sequence
          Length = 240812

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   catggctgtaggtaggaacaaaag 190
             |||||||||||| |||||||||||
Sbjct: 44065 catggctgtagggaggaacaaaag 44088



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>gb|AC016023.8| Drosophila melanogaster clone BACR16F16, complete sequence
          Length = 186404

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    tgttcgttaagcgttctgtgttat 45
             |||||| |||||||||||||||||
Sbjct: 95162 tgttcgctaagcgttctgtgttat 95185



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>emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-510H6, complete sequence
          Length = 188516

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cagatatgacagtgttcttt 86
             ||||||||||||||||||||
Sbjct: 90207 cagatatgacagtgttcttt 90226



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>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the
             complete sequence
          Length = 256818

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    tgttcgttaagcgttctgtgttat 45
             |||||| |||||||||||||||||
Sbjct: 27521 tgttcgctaagcgttctgtgttat 27544



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>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete
             sequence
          Length = 146640

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   cagtccacagacacccctcc 231
             ||||||||||||||||||||
Sbjct: 81221 cagtccacagacacccctcc 81202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,241,763
Number of Sequences: 3902068
Number of extensions: 1241763
Number of successful extensions: 16997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16989
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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