>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 10790302 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 10790243
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 10790242 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 10790189
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 10790685 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 10790626
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 10790625 ttgctcttggt 10790615
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 10790789 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 10790730
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 10790729 caagcagggcgacgagcgcggc 10790708
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 10790860 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 10790815
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0512H04
Length = 151049
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 14025 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 13966
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 13965 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 13912
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 14408 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 14349
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 14348 ttgctcttggt 14338
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 14512 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 14453
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 14452 caagcagggcgacgagcgcggc 14431
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 14583 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 14538
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0085I16
Length = 141701
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 126920 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 126861
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 126860 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 126807
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 127303 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 127244
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 127243 ttgctcttggt 127233
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 127407 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 127348
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 127347 caagcagggcgacgagcgcggc 127326
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 127478 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 127433
>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD
interacting protein 103, complete cds
Length = 2366
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 1611 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 1552
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 1551 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 1498
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1885 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1826
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 1825 ttgctcttggt 1815
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1989 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1930
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 1929 caagcagggcgacgagcgcggc 1908
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 2060 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2015
>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full
insert sequence
Length = 2295
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 1613 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 1554
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 1553 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 1500
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1887 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1828
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 1827 ttgctcttggt 1817
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1991 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1932
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 1931 caagcagggcgacgagcgcggc 1910
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 2062 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2017
>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full
insert sequence
Length = 1352
Score = 147 bits (74), Expect = 6e-32
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 628 gtgctcgggctgcagccttcgctgcttgcttctcagcctgcttcttcttcctttccaaag 687
|||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 689 gtgcacgggctgctgccttcgctgcttgcttctcggccagcttcttcttcctttccaggg 630
Query: 688 caagtttattcttctcgatttcctcctgtctcttgatctctttcaactttgcta 741
||||| |||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 629 caagtctattcttctccatctcctcctgtctcttgatctctttcaacttagcta 576
Score = 101 bits (51), Expect = 3e-18
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 363 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 422
||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 963 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 904
Query: 423 ttggtcttggt 433
||| |||||||
Sbjct: 903 ttgctcttggt 893
Score = 83.8 bits (42), Expect = 8e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 253 tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 312
||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1067 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1008
Query: 313 cgagcagggcgacgagcacggc 334
| ||||||||||||||| ||||
Sbjct: 1007 caagcagggcgacgagcgcggc 986
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 172 gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 219
||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 1138 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 1093
>ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC364.01),
partial mRNA
Length = 963
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gctttcttcctcttcaggatc 404
|||||||||||||||||||||
Sbjct: 336 gctttcttcctcttcaggatc 356
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,807,242
Number of Sequences: 3902068
Number of extensions: 6807242
Number of successful extensions: 173959
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173649
Number of HSP's gapped (non-prelim): 304
length of query: 741
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 718
effective length of database: 17,143,297,704
effective search space: 12308887751472
effective search space used: 12308887751472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)