ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags21n09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 4e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 250 agcttccagtcgaagtggtacacgagattggctagcatgatttcaatggcggcaatggcg 309 |||| |||||| ||| ||||||| | ||| ||||||||||| || |||| |||||| || Sbjct: 12595974 agctcccagtcaaagcggtacaccaaatttgctagcatgatctcgatggtggcaattgca 12595915 Query: 310 aagtttataccggggcatatcctccgccccgtcccgaacggca 352 ||||||||||| ||||| ||||||||||| ||||||| |||| Sbjct: 12595914 aagtttatacctgggcagatcctccgcccgctcccgaatggca 12595872 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 163 gggacaaggaggagcttgtccttgcggtgcac 194 |||| |||||||||||| |||||||||||||| Sbjct: 12596064 gggataaggaggagcttctccttgcggtgcac 12596033 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggcag 353 |||||||| |||| |||||||| |||||||||||| Sbjct: 24148621 ccggggcagatccgccgccccgacccgaacggcag 24148655 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 166 acaaggaggagcttgtccttgcggtgcacgg 196 |||||||||||||| ||||| |||||||||| Sbjct: 12570876 acaaggaggagcttttccttacggtgcacgg 12570846 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacgg 350 |||||||| | ||||||||||| ||||||||| Sbjct: 17519943 ccggggcacagcctccgccccgacccgaacgg 17519974
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 77.8 bits (39), Expect = 4e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 250 agcttccagtcgaagtggtacacgagattggctagcatgatttcaatggcggcaatggcg 309 |||| |||||| ||| ||||||| | ||| ||||||||||| || |||| |||||| || Sbjct: 78287 agctcccagtcaaagcggtacaccaaatttgctagcatgatctcgatggtggcaattgca 78228 Query: 310 aagtttataccggggcatatcctccgccccgtcccgaacggca 352 ||||||||||| ||||| ||||||||||| ||||||| |||| Sbjct: 78227 aagtttatacctgggcagatcctccgcccgctcccgaatggca 78185 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 163 gggacaaggaggagcttgtccttgcggtgcac 194 |||| |||||||||||| |||||||||||||| Sbjct: 78377 gggataaggaggagcttctccttgcggtgcac 78346 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 166 acaaggaggagcttgtccttgcggtgcacgg 196 |||||||||||||| ||||| |||||||||| Sbjct: 53189 acaaggaggagcttttccttacggtgcacgg 53159
>gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochrome P450 mRNA, complete cds Length = 1865 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 412 cgctcaggcaggaactcctccgcgctctcccagctgctgg 451 |||||||||| |||||||||||| |||||||||||||||| Sbjct: 1310 cgctcaggcacgaactcctccgctctctcccagctgctgg 1271 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 247 ggcagcttccagtcgaagtggtacacgagattggctagcatgatttcaatggcggcaatg 306 ||||||| ||||||||||||||| | ||||||||| || ||||| || | || | || Sbjct: 1475 ggcagctcccagtcgaagtggtatatgagattggccaggatgatctcgaaggtgagcgtg 1416 Query: 307 gcgaagtttataccggggcatatcctccgccccgtcccgaacggcag 353 |||||||||||||| ||||| ||||| || || | |||||||||||| Sbjct: 1415 gcgaagtttatacctgggcacatccttcgtccagacccgaacggcag 1369 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 163 gggacaaggaggagcttgtccttgcggtgcac 194 |||||||||||||| || ||||| |||||||| Sbjct: 1553 gggacaaggaggaggttctccttccggtgcac 1522
>ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1605 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 280 gctagcatgatttcaatggcggcaatggcgaagtttataccggggcatatcctccgcccc 339 |||||||||| || |||||||| || |||||||| ||||| |||||||||||||| || Sbjct: 1472 gctagcatgacctcgatggcggcgatcgcgaagttcatacctgggcatatcctccgacca 1413 Query: 340 gtcccgaacggca 352 || ||||| |||| Sbjct: 1412 gttccgaatggca 1400 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 163 gggacaaggaggagcttgtccttgcggtg 191 ||||||||||||||||| |||||| |||| Sbjct: 1592 gggacaaggaggagcttctccttgaggtg 1564
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 280 gctagcatgatttcaatggcggcaatggcgaagtttataccggggcatatcctccgcccc 339 |||||||||| || |||||||| || |||||||| ||||| |||||||||||||| || Sbjct: 282564 gctagcatgacctcgatggcggcgatcgcgaagttcatacctgggcatatcctccgacca 282623 Query: 340 gtcccgaacggca 352 || ||||| |||| Sbjct: 282624 gttccgaatggca 282636 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 280 gctagcatgatttcaatggcggcaatggcgaagtttataccggggcatatcctccgccc 338 ||||||||||| || |||| |||||| || || ||||| || ||||||||||||||||| Sbjct: 290475 gctagcatgatctcgatggtggcaatagcaaaatttatgcccgggcatatcctccgccc 290533 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 250 agcttccagtcgaagtggtacacgagattggctagcatgatttcaatggcggcaatggcg 309 |||||||| |||||| | ||||| || | ||||||||||| || |||| || || ||| Sbjct: 287127 agcttccaatcgaagcgatacacaaggcttgctagcatgatctcgatggtggtgatcgcg 287186 Query: 310 aagtttataccggggcatatcct 332 ||||||||||| ||||||||||| Sbjct: 287187 aagtttatacctgggcatatcct 287209 Score = 44.1 bits (22), Expect = 0.51 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 161 gagggacaaggaggagcttgtccttgcggtgcacggtgagcccaaa 206 |||| |||||||||||||| ||||| ||||||||||| || ||||| Sbjct: 290354 gaggaacaaggaggagcttctcctt-cggtgcacggtcagtccaaa 290398 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 163 gggacaaggaggagcttgtccttgcggtg 191 ||||||||||||||||| |||||| |||| Sbjct: 282444 gggacaaggaggagcttctccttgaggtg 282472
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 280 gctagcatgatttcaatggcggcaatggcgaagtttataccggggcatatcctccgcccc 339 |||||||||| || |||||||| || |||||||| ||||| |||||||||||||| || Sbjct: 48990 gctagcatgacctcgatggcggcgatcgcgaagttcatacctgggcatatcctccgacca 49049 Query: 340 gtcccgaacggca 352 || ||||| |||| Sbjct: 49050 gttccgaatggca 49062 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 280 gctagcatgatttcaatggcggcaatggcgaagtttataccggggcatatcctccgccc 338 ||||||||||| || |||| |||||| || || ||||| || ||||||||||||||||| Sbjct: 56901 gctagcatgatctcgatggtggcaatagcaaaatttatgcccgggcatatcctccgccc 56959 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 250 agcttccagtcgaagtggtacacgagattggctagcatgatttcaatggcggcaatggcg 309 |||||||| |||||| | ||||| || | ||||||||||| || |||| || || ||| Sbjct: 53553 agcttccaatcgaagcgatacacaaggcttgctagcatgatctcgatggtggtgatcgcg 53612 Query: 310 aagtttataccggggcatatcct 332 ||||||||||| ||||||||||| Sbjct: 53613 aagtttatacctgggcatatcct 53635 Score = 44.1 bits (22), Expect = 0.51 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 161 gagggacaaggaggagcttgtccttgcggtgcacggtgagcccaaa 206 |||| |||||||||||||| ||||| ||||||||||| || ||||| Sbjct: 56780 gaggaacaaggaggagcttctcctt-cggtgcacggtcagtccaaa 56824 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 163 gggacaaggaggagcttgtccttgcggtg 191 ||||||||||||||||| |||||| |||| Sbjct: 48870 gggacaaggaggagcttctccttgaggtg 48898
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggcagg 354 |||||||| |||| |||||||| ||||||||||||| Sbjct: 1406 ccggggcagatccgccgccccgacccgaacggcagg 1371
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggcagg 354 |||||||| |||| |||||||| ||||||||||||| Sbjct: 35476926 ccggggcagatccgccgccccgacccgaacggcagg 35476891 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 cctccgccccgtcccgaacggcagg 354 ||||||||||| ||||||||||||| Sbjct: 704912 cctccgccccgacccgaacggcagg 704936
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggcagg 354 |||||||| |||| |||||||| ||||||||||||| Sbjct: 35566998 ccggggcagatccgccgccccgacccgaacggcagg 35566963 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 cctccgccccgtcccgaacggcagg 354 ||||||||||| ||||||||||||| Sbjct: 704910 cctccgccccgacccgaacggcagg 704934
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggcagg 354 |||||||| |||| |||||||| ||||||||||||| Sbjct: 10700 ccggggcagatccgccgccccgacccgaacggcagg 10735
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggcagg 354 |||||||| |||| |||||||| ||||||||||||| Sbjct: 9889 ccggggcagatccgccgccccgacccgaacggcagg 9854
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggcag 353 |||||||| |||| |||||||| |||||||||||| Sbjct: 82079 ccggggcagatccgccgccccgacccgaacggcag 82113
>ref|XM_472908.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1530 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggca 352 ||||||||| |||||||||| |||||||||||| Sbjct: 1349 ccggggcatctcctccgcccgatcccgaacggca 1316
>gb|AC123686.11| Mus musculus chromosome 5, clone RP23-301L9, complete sequence Length = 212246 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 agggacaaggaggagcttgtcc 183 |||||||||||||||||||||| Sbjct: 115535 agggacaaggaggagcttgtcc 115514
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggca 352 ||||||||| |||||||||| |||||||||||| Sbjct: 21611 ccggggcatctcctccgcccgatcccgaacggca 21644
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggca 352 ||||||||| |||||||||| |||||||||||| Sbjct: 24024632 ccggggcatctcctccgcccgatcccgaacggca 24024665
>dbj|AK121175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082O06, full insert sequence Length = 1733 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacggca 352 ||||||||| |||||||||| |||||||||||| Sbjct: 1408 ccggggcatctcctccgcccgatcccgaacggca 1375
>emb|X81828.1|ZMCP71C1G Z.mays CYP71C1 gene for cytochrome P-450 Length = 4352 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Minus Query: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528 |||||||||||||| || |||| || |||||||||||||| || |||||||| Sbjct: 3461 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 3408
>emb|X81827.1|ZMCYP71C1 Z.mays CYP71C1 mRNA for cytochrome P-450 Length = 1890 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Minus Query: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528 |||||||||||||| || |||| || |||||||||||||| || |||||||| Sbjct: 1337 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 1284
>dbj|AK063679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E04, full insert sequence Length = 737 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacggca 352 ||||||||| |||||||||| |||||||||||| Sbjct: 95 ccggggcatctcctccgcccgatcccgaacggca 128
>gb|AY105992.1| Zea mays PCO117584 mRNA sequence Length = 2038 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Minus Query: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528 |||||||||||||| || |||| || |||||||||||||| || |||||||| Sbjct: 1518 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 1465
>gb|AF004210.1|AF004210 Zea mays cytochrome P-450 (CYP71C1) mRNA, partial cds Length = 1185 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Minus Query: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528 |||||||||||||| || |||| || |||||||||||||| || |||||||| Sbjct: 700 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 647
>ref|NM_188578.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1737 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cggtggcagcttccagtcgaagtggtaca 271 |||||||| || ||||||||||||||||| Sbjct: 1614 cggtggcaactcccagtcgaagtggtaca 1586
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1557 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 ggcagcttccagtcgaagtggtaca 271 ||||||| ||||||||||||||||| Sbjct: 1436 ggcagctcccagtcgaagtggtaca 1412
>gb|BT018846.1| Zea mays clone EL01N0555A04.d mRNA sequence Length = 1672 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 308 cgaagtttataccggggcatatcctccgccccgtcccgaacggca 352 ||||||| || |||||||| ||||||| ||| | ||||||||||| Sbjct: 1449 cgaagttgatcccggggcacatcctcctcccagccccgaacggca 1405
>gb|AC093195.2| Drosophila melanogaster clone BACR16J09, complete sequence Length = 178863 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 5860 ccgctgatcccggtggcagct 5880
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 caatggcggcaatggcgaagt 313 ||||||||||||||||||||| Sbjct: 3267156 caatggcggcaatggcgaagt 3267176
>gb|AC068648.16| Homo sapiens 12 BAC RP11-331C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126325 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ttgaagtccaaaagcccaaga 60 ||||||||||||||||||||| Sbjct: 43039 ttgaagtccaaaagcccaaga 43059
>ref|NM_164757.1| Drosophila melanogaster Slowpoke binding protein CG6772-RC, transcript variant C (Slob), mRNA Length = 2543 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 521 ccgctgatcccggtggcagct 501
>ref|NM_164756.1| Drosophila melanogaster Slowpoke binding protein CG6772-RB, transcript variant B (Slob), mRNA Length = 2751 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 729 ccgctgatcccggtggcagct 709
>ref|NM_058001.2| Drosophila melanogaster Slowpoke binding protein CG6772-RA, transcript variant A (Slob), mRNA Length = 2479 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 457 ccgctgatcccggtggcagct 437
>ref|NM_001038792.1| Drosophila melanogaster Slowpoke binding protein CG6772-RD, transcript variant D (Slob), mRNA Length = 2449 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 457 ccgctgatcccggtggcagct 437
>gb|AC092219.1|AC092219 Drosophila melanogaster, chromosome 2L, region 28A-28B, BAC clone BACR13D17, complete sequence Length = 177130 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 17848 ccgctgatcccggtggcagct 17828
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 247 ggcagcttccagtcgaagtggtaca 271 ||||||| ||||||||||||||||| Sbjct: 15564099 ggcagctcccagtcgaagtggtaca 15564123 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cggtggcagcttccagtcgaagtggtaca 271 |||||||| || ||||||||||||||||| Sbjct: 7055066 cggtggcaactcccagtcgaagtggtaca 7055038
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 cctccgccccgtcccgaacggcagg 354 ||||||||||| ||||||||||||| Sbjct: 457 cctccgccccgacccgaacggcagg 481
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 cctccgccccgtcccgaacggcagg 354 ||||||||||| ||||||||||||| Sbjct: 90793 cctccgccccgacccgaacggcagg 90817
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cggtggcagcttccagtcgaagtggtaca 271 |||||||| || ||||||||||||||||| Sbjct: 42646 cggtggcaactcccagtcgaagtggtaca 42618
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 247 ggcagcttccagtcgaagtggtaca 271 ||||||| ||||||||||||||||| Sbjct: 121608 ggcagctcccagtcgaagtggtaca 121632
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 247 ggcagcttccagtcgaagtggtaca 271 ||||||| ||||||||||||||||| Sbjct: 1996 ggcagctcccagtcgaagtggtaca 2020
>dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034H03, full insert sequence Length = 1890 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cggtggcagcttccagtcgaagtggtaca 271 |||||||| || ||||||||||||||||| Sbjct: 1583 cggtggcaactcccagtcgaagtggtaca 1555
>gb|BT021228.1| Drosophila melanogaster RH44914 full insert cDNA Length = 2466 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 458 ccgctgatcccggtggcagct 438
>gb|AE003618.3| Drosophila melanogaster chromosome 2L, section 27 of 83 of the complete sequence Length = 268661 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 103854 ccgctgatcccggtggcagct 103874
>gb|AC005834.1|AC005834 Drosophila melanogaster DNA sequence (P1s DS01589 (D279), DS01529 (D280), and DS02501 (D281)), complete sequence Length = 207672 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ccgctgatcccggtggcagct 253 ||||||||||||||||||||| Sbjct: 51756 ccgctgatcccggtggcagct 51736
>ref|NM_113540.4| Arabidopsis thaliana CYP71B37; heme binding / iron ion binding / monooxygenase/ oxygen binding AT3G26330 (CYP71B37) mRNA, complete cds Length = 1619 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 ttccagtcgaagtggtacacgagattggctag 284 |||||||| || ||||||| |||||||||||| Sbjct: 1439 ttccagtcaaaatggtacaagagattggctag 1408
>gb|AC007138.1| Arabidopsis thaliana BAC T7B11 from chromosome IV near 10 cM, complete sequence Length = 120185 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagaattgaagtccaaaagc 54 |||||||||||||||||||| Sbjct: 41896 aagaattgaagtccaaaagc 41877
>gb|AC150775.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0048P17,complete sequence Length = 137127 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tccgccccgtcccgaacggc 351 |||||||||||||||||||| Sbjct: 106926 tccgccccgtcccgaacggc 106907
>ref|XM_955733.1| Neurospora crassa OR74A hypothetical protein (NCU01289.1) partial mRNA Length = 1959 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ccgcagcactgccgccttgc 405 |||||||||||||||||||| Sbjct: 1506 ccgcagcactgccgccttgc 1525
>ref|XM_326781.1| Neurospora crassa OR74A hypothetical protein (NCU01289.1) partial mRNA Length = 1959 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ccgcagcactgccgccttgc 405 |||||||||||||||||||| Sbjct: 1506 ccgcagcactgccgccttgc 1525
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tagtaaagaatggggtgtcc 102 |||||||||||||||||||| Sbjct: 5003421 tagtaaagaatggggtgtcc 5003402
>emb|AJ748296.1| Sulfolobus islandicus rudivirus 1 variant XX, complete genome Length = 33641 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atagatagtaaagaatgggg 97 |||||||||||||||||||| Sbjct: 13330 atagatagtaaagaatgggg 13311
>emb|AJ414696.1|SVI414696 Sulfolobus virus SIRV-1 complete viral genome Length = 32308 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atagatagtaaagaatgggg 97 |||||||||||||||||||| Sbjct: 13090 atagatagtaaagaatgggg 13071
>ref|XM_848165.1| PREDICTED: Canis familiaris similar to Cytochrome b561 (Cytochrome b-561) (LOC610631), mRNA Length = 1142 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gcgctctcccagctgctggg 452 |||||||||||||||||||| Sbjct: 55 gcgctctcccagctgctggg 74
>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence Length = 115339 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tccgccccgtcccgaacggc 351 |||||||||||||||||||| Sbjct: 29799 tccgccccgtcccgaacggc 29780
>ref|XM_967032.1| PREDICTED: Tribolium castaneum hypothetical protein LOC660829 (LOC660829), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 aatggcggcaatggcgaagtttat 317 ||||||||||||||||| |||||| Sbjct: 468 aatggcggcaatggcgatgtttat 445
>gb|AC104325.28| Mus musculus strain C57BL/6J clone rp23-204m3 map 15, complete sequence Length = 224086 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cttgtgtgcacaacactttg 125 |||||||||||||||||||| Sbjct: 111674 cttgtgtgcacaacactttg 111693
>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 210385 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gagagggacaaggaggagct 178 |||||||||||||||||||| Sbjct: 24587 gagagggacaaggaggagct 24568
>emb|BX294016.1|NCB9K17 Neurospora crassa DNA linkage group V BAC clone B9K17 Length = 71774 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ccgcagcactgccgccttgc 405 |||||||||||||||||||| Sbjct: 25849 ccgcagcactgccgccttgc 25830
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagaattgaagtccaaaagc 54 |||||||||||||||||||| Sbjct: 27249 aagaattgaagtccaaaagc 27230
>gb|AC131867.4| Rattus norvegicus 1 BAC CH230-397C2 (Children's Hospital Oakland Research Institute) complete sequence Length = 133470 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gagagggacaaggaggagct 178 |||||||||||||||||||| Sbjct: 113247 gagagggacaaggaggagct 113228
>gb|AC142245.14| Mus musculus chromosome 15, clone RP23-82J20, complete sequence Length = 242954 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tgaagtccaaaagcccaaga 60 |||||||||||||||||||| Sbjct: 141106 tgaagtccaaaagcccaaga 141125
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tccgccccgtcccgaacggc 351 |||||||||||||||||||| Sbjct: 1031517 tccgccccgtcccgaacggc 1031498
>emb|BX824027.1|CNS0A6XQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZE01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1547 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 ttccagtcgaagtggtacacgagattggctag 284 |||||||| || ||||||| |||||||||||| Sbjct: 1385 ttccagtcaaaatggtacaagagattggctag 1354
>gb|AC093110.4| Homo sapiens BAC clone RP11-564H16 from 2, complete sequence Length = 168550 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaagcgctcaggcaggaac 426 |||||||||||||||||||| Sbjct: 91992 tgaagcgctcaggcaggaac 91973
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacgg 350 |||||||| | ||||||||||| ||||||||| Sbjct: 150984 ccggggcacagcctccgccccgacccgaacgg 151015
>dbj|AP005472.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075M17 Length = 91422 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 319 ccggggcatatcctccgccccgtcccgaacgg 350 |||||||| | ||||||||||| ||||||||| Sbjct: 24389 ccggggcacagcctccgccccgacccgaacgg 24420
>dbj|AP001298.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F20C19 Length = 71184 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 253 ttccagtcgaagtggtacacgagattggctag 284 |||||||| || ||||||| |||||||||||| Sbjct: 10763 ttccagtcaaaatggtacaagagattggctag 10794
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 295 atggcggcaatggcgaagtttataccggggcatatcctccgccc 338 |||| |||||| || || ||||| || ||||||||||||||||| Sbjct: 4 atggtggcaatagcaaaatttatgcccgggcatatcctccgccc 47
>dbj|AK106229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A12, full insert sequence Length = 1679 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 319 ccggggcatatcctccgccccgtcccgaacgg 350 |||||||| | ||||||||||| ||||||||| Sbjct: 1402 ccggggcacagcctccgccccgacccgaacgg 1371
>gb|DQ206547.1| Leucosolenia sp. AR-2003 isolate TOA6 eukaryotic translation initiation factor 2 mRNA, partial cds Length = 363 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 catgatttcaatggcggcaa 304 |||||||||||||||||||| Sbjct: 120 catgatttcaatggcggcaa 101
>gb|AC105358.7| Mus musculus chromosome 15, clone RP24-291F2, complete sequence Length = 179508 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cttgtgtgcacaacactttg 125 |||||||||||||||||||| Sbjct: 16902 cttgtgtgcacaacactttg 16883
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tccgccccgtcccgaacggc 351 |||||||||||||||||||| Sbjct: 1029238 tccgccccgtcccgaacggc 1029219 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,516,544 Number of Sequences: 3902068 Number of extensions: 3516544 Number of successful extensions: 71125 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70680 Number of HSP's gapped (non-prelim): 445 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
