ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21n06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAH2_CHLRE (P24258) Carbonic anhydrase 2 precursor (EC 4.2.1.1) ... 32 1.7
2RL12_HALVO (P41197) 50S ribosomal protein L12P ('A' type) 30 6.6
3CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homo... 30 8.6

>CAH2_CHLRE (P24258) Carbonic anhydrase 2 precursor (EC 4.2.1.1) (Carbonate|
           dehydratase 2) (CA2) [Contains: Carbonic anhydrase 2
           large chain; Carbonic anhydrase 2 small chain]
          Length = 380

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 359 HHRHPYRRLLHNHLH 403
           HH H +RRLLHNH H
Sbjct: 310 HHHHHHRRLLHNHAH 324



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>RL12_HALVO (P41197) 50S ribosomal protein L12P ('A' type)|
          Length = 113

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 485 KQMIKEKKIIDVLLSAETAEAQFFLF*GGDDYAEVVYRDDDDEMDSTEMRGSGIGEAMGG 306
           K ++   + +D+  + ETA A      GG    EV   DDDDE D+ E      G+  G 
Sbjct: 39  KALVAALEDVDIEEAIETAAAAPAPAAGGSAGGEVEAADDDDEEDAEEEAADEGGDDDGD 98

Query: 305 DE 300
           D+
Sbjct: 99  DD 100



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>CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)|
           (hPc2)
          Length = 558

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 353 PSHHRHPYRRLLHNHLHPRKEKIELQLS 436
           PSHH HP+    H+H H     + L LS
Sbjct: 378 PSHHPHPHPHHHHHHHHHHHHAVGLNLS 405


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,707,450
Number of Sequences: 219361
Number of extensions: 1386497
Number of successful extensions: 4521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4499
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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