| Clone Name | rbags21n02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191481.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1266 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 364 tgatcacaagtatctcccaagcccagttgcccgtgctctccccagccccaagtgtacaag 423 |||||||||||||||||||| || || || || ||||||||||| ||||| ||| | | Sbjct: 1088 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaaccccaggtgaagact 1029 Query: 424 gctccgctgtctgttatcatagcagaatgttcagtgccggctgctat 470 | ||| | ||||||| | |||||||||||||||||| || ||||| Sbjct: 1028 gttcctttatctgttaccgaagcagaatgttcagtgccagcagctat 982
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 364 tgatcacaagtatctcccaagcccagttgcccgtgctctccccagcccca 413 |||||||||||||||||||| || || || || ||||||||||| ||||| Sbjct: 32922577 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaacccca 32922626
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413G02 Length = 155633 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 364 tgatcacaagtatctcccaagcccagttgcccgtgctctccccagcccca 413 |||||||||||||||||||| || || || || ||||||||||| ||||| Sbjct: 143982 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaacccca 144031
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 ttactagtgttcacctttctcacata 195 |||||||||||||| ||||||||||| Sbjct: 3952248 ttactagtgttcacgtttctcacata 3952223
>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030G02 Length = 187265 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 ttactagtgttcacctttctcacata 195 |||||||||||||| ||||||||||| Sbjct: 150719 ttactagtgttcacgtttctcacata 150694
>ref|XM_313138.2| Anopheles gambiae str. PEST ENSANGP00000012845 (ENSANGG00000010356), partial mRNA Length = 4254 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 ctccccagccccaagtgtacaa 422 |||||||||||||||||||||| Sbjct: 3040 ctccccagccccaagtgtacaa 3019
>ref|XM_455796.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F15906g predicted mRNA Length = 1050 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 ccgtgctctccccagccccaa 414 ||||||||||||||||||||| Sbjct: 902 ccgtgctctccccagccccaa 882
>ref|XM_504012.1| Yarrowia lipolytica CLIB122, YALI0E16236g predicted mRNA Length = 1998 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 526 gatgattcatgatgtgtactgcttgttgt 554 ||||||| |||||| |||||||||||||| Sbjct: 1314 gatgattgatgatgggtactgcttgttgt 1286
>emb|AL355338.33| Human DNA sequence from clone RP11-12G12 on chromosome 13 Contains the gene for zinc finger protein of the cerebellum 5 (ZIC5), the ZIC2 gene for Zic family member 2 (odd-paired homolog Drosophila), a 13kDa differentiation-associated protein (DAP13) pseudogene, an asparagine synthetase (ASNS) pseudogene, the 5' end of the PCCA gene for propionyl Coenzyme A carboxylase alpha polypeptide and seven CpG islands, complete sequence Length = 153762 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tgtgtggaaacacaacgaaaa 217 ||||||||||||||||||||| Sbjct: 33832 tgtgtggaaacacaacgaaaa 33852
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 ccgtgctctccccagccccaa 414 ||||||||||||||||||||| Sbjct: 1472561 ccgtgctctccccagccccaa 1472581
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 agccaggttcacggcgatggt 281 ||||||||||||||||||||| Sbjct: 105007 agccaggttcacggcgatggt 105027
>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence Length = 233171 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 agatgattcatgatgtgtact 545 ||||||||||||||||||||| Sbjct: 210418 agatgattcatgatgtgtact 210398
>gb|AC157793.6| Mus musculus chromosome 1, clone RP24-175H22, complete sequence Length = 130354 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 agatgattcatgatgtgtact 545 ||||||||||||||||||||| Sbjct: 69178 agatgattcatgatgtgtact 69198
>gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, complete sequence Length = 182551 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 agatgattcatgatgtgtact 545 ||||||||||||||||||||| Sbjct: 60707 agatgattcatgatgtgtact 60727
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 526 gatgattcatgatgtgtactgcttgttgt 554 ||||||| |||||| |||||||||||||| Sbjct: 1926731 gatgattgatgatgggtactgcttgttgt 1926759
>gb|AC163272.6| Mus musculus chromosome 3, clone RP24-388P8, complete sequence Length = 143565 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tctgaggaaccacctgatca 369 |||||||||||||||||||| Sbjct: 4307 tctgaggaaccacctgatca 4326
>ref|XM_420738.1| PREDICTED: Gallus gallus similar to Nedd4 binding protein 2; BCL-3 binding protein (LOC422786), mRNA Length = 5579 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gattgcacacacacggagcaaatc 121 |||||||||||||| ||||||||| Sbjct: 3514 gattgcacacacacagagcaaatc 3537
>emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 on chromosome 22, complete sequence Length = 129389 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gtgctctccccagccccaag 415 |||||||||||||||||||| Sbjct: 57616 gtgctctccccagccccaag 57635
>dbj|AB189036.1| Streptomyces septatus ssmp gene for metalloendoprotease, complete cds Length = 3278 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 caaatccttgttgcgcccct 135 |||||||||||||||||||| Sbjct: 1156 caaatccttgttgcgcccct 1175
>dbj|AK093429.1| Homo sapiens cDNA FLJ36110 fis, clone TESTI2021939 Length = 1686 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tctgaggaaccacctgatca 369 |||||||||||||||||||| Sbjct: 698 tctgaggaaccacctgatca 717
>gb|AC068234.8| Homo sapiens chromosome 17, clone RP11-290H9, complete sequence Length = 174566 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tctgaggaaccacctgatca 369 |||||||||||||||||||| Sbjct: 66138 tctgaggaaccacctgatca 66157
>gb|AC007599.6| Homo sapiens chromosome 16 clone RP11-177N22, complete sequence Length = 182101 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccaacagcattacaagaaaa 166 |||||||||||||||||||| Sbjct: 138205 ccaacagcattacaagaaaa 138186
>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence Length = 159371 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tctgaggaaccacctgatca 369 |||||||||||||||||||| Sbjct: 19805 tctgaggaaccacctgatca 19786
>dbj|AK177025.1| Mus musculus cDNA, clone:Y0G0101F07, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000044779, based on BLAT search Length = 412 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 cgtgctctccccagccccaa 414 |||||||||||||||||||| Sbjct: 170 cgtgctctccccagccccaa 151
>gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_474B12, complete sequence Length = 153053 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccaacagcattacaagaaaa 166 |||||||||||||||||||| Sbjct: 1836 ccaacagcattacaagaaaa 1817
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete sequences Length = 215225 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gctctccccagccccaagtg 417 |||||||||||||||||||| Sbjct: 210111 gctctccccagccccaagtg 210130
>gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, complete cds Length = 89549 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gctctccccagccccaagtg 417 |||||||||||||||||||| Sbjct: 46639 gctctccccagccccaagtg 46620
>emb|AL627408.13| Mouse DNA sequence from clone RP23-279G21 on chromosome X, complete sequence Length = 98324 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tccaacagcattacaagaaa 165 |||||||||||||||||||| Sbjct: 2714 tccaacagcattacaagaaa 2695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,185,847 Number of Sequences: 3902068 Number of extensions: 5185847 Number of successful extensions: 102199 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102062 Number of HSP's gapped (non-prelim): 137 length of query: 641 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 618 effective length of database: 17,143,297,704 effective search space: 10594557981072 effective search space used: 10594557981072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)