ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191481.1| Oryza sativa (japonica cultivar-group), predic... 54 6e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
5dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
6ref|XM_313138.2| Anopheles gambiae str. PEST ENSANGP00000012845 ... 44 0.56
7ref|XM_455796.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F15906g ... 42 2.2
8ref|XM_504012.1| Yarrowia lipolytica CLIB122, YALI0E16236g predi... 42 2.2
9emb|AL355338.33| Human DNA sequence from clone RP11-12G12 on chr... 42 2.2
10emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.2
11gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 2.2
12gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, com... 42 2.2
13gb|AC157793.6| Mus musculus chromosome 1, clone RP24-175H22, com... 42 2.2
14gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, co... 42 2.2
15emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 42 2.2
16gb|AC163272.6| Mus musculus chromosome 3, clone RP24-388P8, comp... 40 8.7
17ref|XM_420738.1| PREDICTED: Gallus gallus similar to Nedd4 bindi... 40 8.7
18emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 ... 40 8.7
19dbj|AB189036.1| Streptomyces septatus ssmp gene for metalloendop... 40 8.7
20dbj|AK093429.1| Homo sapiens cDNA FLJ36110 fis, clone TESTI2021939 40 8.7
21gb|AC068234.8| Homo sapiens chromosome 17, clone RP11-290H9, com... 40 8.7
22gb|AC007599.6| Homo sapiens chromosome 16 clone RP11-177N22, com... 40 8.7
23gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, com... 40 8.7
24dbj|AK177025.1| Mus musculus cDNA, clone:Y0G0101F07, strand:minu... 40 8.7
25gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_... 40 8.7
26dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.7
27gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, compl... 40 8.7
28emb|AL627408.13| Mouse DNA sequence from clone RP23-279G21 on ch... 40 8.7

>ref|NM_191481.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1266

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 87/107 (81%)
 Strand = Plus / Minus

                                                                        
Query: 364  tgatcacaagtatctcccaagcccagttgcccgtgctctccccagccccaagtgtacaag 423
            |||||||||||||||||||| || || || || ||||||||||| ||||| ||| | |  
Sbjct: 1088 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaaccccaggtgaagact 1029

                                                           
Query: 424  gctccgctgtctgttatcatagcagaatgttcagtgccggctgctat 470
            | |||  | ||||||| |  |||||||||||||||||| || |||||
Sbjct: 1028 gttcctttatctgttaccgaagcagaatgttcagtgccagcagctat 982



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 364      tgatcacaagtatctcccaagcccagttgcccgtgctctccccagcccca 413
                |||||||||||||||||||| || || || || ||||||||||| |||||
Sbjct: 32922577 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaacccca 32922626



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>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0413G02
          Length = 155633

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 364    tgatcacaagtatctcccaagcccagttgcccgtgctctccccagcccca 413
              |||||||||||||||||||| || || || || ||||||||||| |||||
Sbjct: 143982 tgatcacaagtatctcccaaaccaagctgtccatgctctccccaacccca 144031



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 170     ttactagtgttcacctttctcacata 195
               |||||||||||||| |||||||||||
Sbjct: 3952248 ttactagtgttcacgtttctcacata 3952223



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>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030G02
          Length = 187265

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 170    ttactagtgttcacctttctcacata 195
              |||||||||||||| |||||||||||
Sbjct: 150719 ttactagtgttcacgtttctcacata 150694



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>ref|XM_313138.2| Anopheles gambiae str. PEST ENSANGP00000012845 (ENSANGG00000010356),
            partial mRNA
          Length = 4254

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 401  ctccccagccccaagtgtacaa 422
            ||||||||||||||||||||||
Sbjct: 3040 ctccccagccccaagtgtacaa 3019



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>ref|XM_455796.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F15906g predicted mRNA
          Length = 1050

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 394 ccgtgctctccccagccccaa 414
           |||||||||||||||||||||
Sbjct: 902 ccgtgctctccccagccccaa 882



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>ref|XM_504012.1| Yarrowia lipolytica CLIB122, YALI0E16236g predicted mRNA
          Length = 1998

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 526  gatgattcatgatgtgtactgcttgttgt 554
            ||||||| |||||| ||||||||||||||
Sbjct: 1314 gatgattgatgatgggtactgcttgttgt 1286



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>emb|AL355338.33| Human DNA sequence from clone RP11-12G12 on chromosome 13 Contains the
             gene for zinc finger protein of the cerebellum 5 (ZIC5),
             the ZIC2 gene for Zic family member 2 (odd-paired homolog
             Drosophila), a 13kDa differentiation-associated protein
             (DAP13) pseudogene, an asparagine synthetase (ASNS)
             pseudogene, the 5' end of the PCCA gene for propionyl
             Coenzyme A carboxylase alpha polypeptide and seven CpG
             islands, complete sequence
          Length = 153762

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   tgtgtggaaacacaacgaaaa 217
             |||||||||||||||||||||
Sbjct: 33832 tgtgtggaaacacaacgaaaa 33852



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 394     ccgtgctctccccagccccaa 414
               |||||||||||||||||||||
Sbjct: 1472561 ccgtgctctccccagccccaa 1472581



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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 261    agccaggttcacggcgatggt 281
              |||||||||||||||||||||
Sbjct: 105007 agccaggttcacggcgatggt 105027



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>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence
          Length = 233171

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 525    agatgattcatgatgtgtact 545
              |||||||||||||||||||||
Sbjct: 210418 agatgattcatgatgtgtact 210398



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>gb|AC157793.6| Mus musculus chromosome 1, clone RP24-175H22, complete sequence
          Length = 130354

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 525   agatgattcatgatgtgtact 545
             |||||||||||||||||||||
Sbjct: 69178 agatgattcatgatgtgtact 69198



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>gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, complete sequence
          Length = 182551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 525   agatgattcatgatgtgtact 545
             |||||||||||||||||||||
Sbjct: 60707 agatgattcatgatgtgtact 60727



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 526     gatgattcatgatgtgtactgcttgttgt 554
               ||||||| |||||| ||||||||||||||
Sbjct: 1926731 gatgattgatgatgggtactgcttgttgt 1926759



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>gb|AC163272.6| Mus musculus chromosome 3, clone RP24-388P8, complete sequence
          Length = 143565

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  tctgaggaaccacctgatca 369
            ||||||||||||||||||||
Sbjct: 4307 tctgaggaaccacctgatca 4326



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>ref|XM_420738.1| PREDICTED: Gallus gallus similar to Nedd4 binding protein 2; BCL-3
            binding protein (LOC422786), mRNA
          Length = 5579

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   gattgcacacacacggagcaaatc 121
            |||||||||||||| |||||||||
Sbjct: 3514 gattgcacacacacagagcaaatc 3537



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>emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 on chromosome 22, complete
             sequence
          Length = 129389

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   gtgctctccccagccccaag 415
             ||||||||||||||||||||
Sbjct: 57616 gtgctctccccagccccaag 57635



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>dbj|AB189036.1| Streptomyces septatus ssmp gene for metalloendoprotease, complete cds
          Length = 3278

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  caaatccttgttgcgcccct 135
            ||||||||||||||||||||
Sbjct: 1156 caaatccttgttgcgcccct 1175



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>dbj|AK093429.1| Homo sapiens cDNA FLJ36110 fis, clone TESTI2021939
          Length = 1686

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tctgaggaaccacctgatca 369
           ||||||||||||||||||||
Sbjct: 698 tctgaggaaccacctgatca 717



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>gb|AC068234.8| Homo sapiens chromosome 17, clone RP11-290H9, complete sequence
          Length = 174566

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   tctgaggaaccacctgatca 369
             ||||||||||||||||||||
Sbjct: 66138 tctgaggaaccacctgatca 66157



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>gb|AC007599.6| Homo sapiens chromosome 16 clone RP11-177N22, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ccaacagcattacaagaaaa 166
              ||||||||||||||||||||
Sbjct: 138205 ccaacagcattacaagaaaa 138186



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>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence
          Length = 159371

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tctgaggaaccacctgatca 369
             ||||||||||||||||||||
Sbjct: 19805 tctgaggaaccacctgatca 19786



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>dbj|AK177025.1| Mus musculus cDNA, clone:Y0G0101F07, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000044779, based on BLAT search
          Length = 412

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 cgtgctctccccagccccaa 414
           ||||||||||||||||||||
Sbjct: 170 cgtgctctccccagccccaa 151



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>gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_474B12, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ccaacagcattacaagaaaa 166
            ||||||||||||||||||||
Sbjct: 1836 ccaacagcattacaagaaaa 1817



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>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
              sequences
          Length = 215225

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    gctctccccagccccaagtg 417
              ||||||||||||||||||||
Sbjct: 210111 gctctccccagccccaagtg 210130



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>gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, complete cds
          Length = 89549

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   gctctccccagccccaagtg 417
             ||||||||||||||||||||
Sbjct: 46639 gctctccccagccccaagtg 46620



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>emb|AL627408.13| Mouse DNA sequence from clone RP23-279G21 on chromosome X, complete
            sequence
          Length = 98324

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  tccaacagcattacaagaaa 165
            ||||||||||||||||||||
Sbjct: 2714 tccaacagcattacaagaaa 2695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,185,847
Number of Sequences: 3902068
Number of extensions: 5185847
Number of successful extensions: 102199
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102062
Number of HSP's gapped (non-prelim): 137
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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