ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22b23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_686620.1| PREDICTED: Danio rerio similar to Lon protease ... 42 0.15
2emb|Z99494.1|MLCB57 Mycobacterium leprae cosmid B57 38 2.3
3emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete ... 38 2.3
4gb|L04666.1|MSGB1935CS M. leprae genomic sequence, cosmid b1935 38 2.3
5gb|AC096915.2| Homo sapiens chromosome 3 clone RP11-24H1, comple... 36 9.1
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.1
7gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell P... 36 9.1
8dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D... 36 9.1
9ref|XM_314993.2| Anopheles gambiae str. PEST ENSANGP00000021379 ... 36 9.1

>ref|XM_686620.1| PREDICTED: Danio rerio similar to Lon protease homolog,
           mitochondrial precursor (Lon protease-like protein)
           (LONP) (LONHs) (LOC563257), mRNA
          Length = 2274

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  cccgcctcacgctaggcagca 31
           |||||||||||||||||||||
Sbjct: 86  cccgcctcacgctaggcagca 106



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>emb|Z99494.1|MLCB57 Mycobacterium leprae cosmid B57
          Length = 38029

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    gcagcacgaagtacataaagaat 48
             ||||||||||| |||||||||||
Sbjct: 11256 gcagcacgaagaacataaagaat 11278



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>emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete genome; segment 8/10
          Length = 342300

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 26     gcagcacgaagtacataaagaat 48
              ||||||||||| |||||||||||
Sbjct: 199665 gcagcacgaagaacataaagaat 199643



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>gb|L04666.1|MSGB1935CS M. leprae genomic sequence, cosmid b1935
          Length = 40085

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    gcagcacgaagtacataaagaat 48
             ||||||||||| |||||||||||
Sbjct: 32675 gcagcacgaagaacataaagaat 32697



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>gb|AC096915.2| Homo sapiens chromosome 3 clone RP11-24H1, complete sequence
          Length = 170162

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ttcttatttcccgcctca 19
             ||||||||||||||||||
Sbjct: 33515 ttcttatttcccgcctca 33532



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                      
Query: 1        attcttatttcccgcctcacgc 22
                ||||||||||||| ||||||||
Sbjct: 24530999 attcttatttccctcctcacgc 24530978



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>gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184447

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      ttcttatttcccgcctca 19
              ||||||||||||||||||
Sbjct: 173863 ttcttatttcccgcctca 173880



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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1014_H03
          Length = 132696

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     attcttatttcccgcctcacgc 22
             ||||||||||||| ||||||||
Sbjct: 45100 attcttatttccctcctcacgc 45079



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>ref|XM_314993.2| Anopheles gambiae str. PEST ENSANGP00000021379 (ENSANGG00000018890),
            partial mRNA
          Length = 5277

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   gcagcacgaagtacataa 43
            ||||||||||||||||||
Sbjct: 4483 gcagcacgaagtacataa 4466


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,714
Number of Sequences: 3902068
Number of extensions: 259714
Number of successful extensions: 11166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11153
Number of HSP's gapped (non-prelim): 13
length of query: 62
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 41
effective length of database: 17,151,101,840
effective search space: 703195175440
effective search space used: 703195175440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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