| Clone Name | rbags21m22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L23, full insert sequence Length = 1858 Score = 238 bits (120), Expect = 2e-59 Identities = 237/276 (85%) Strand = Plus / Minus Query: 225 gaatcagcctttgaaggagctcagcgctctgataagatgttgatacacttcgatgcccct 284 |||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||| Sbjct: 1372 gaatcaacctttgaaggagctcagtgctctaataatatgttcatacactttgatgcccct 1313 Query: 285 caggaacactttatcctccagaaactcgttatgatcgtgaagcaatattggagtatttat 344 ||||| |||||||||||||||||||| |||| || ||||| ||||| ||||| ||| | Sbjct: 1312 taggaatactttatcctccagaaactcattattgtcatgaagtaatataggagtgtttgt 1253 Query: 345 cattggagaaaacccaagggctggaacacccatctgcctcacgaatcgggcgtccgtggt 404 ||| ||||||||||||||||| |||| |||| |||||| | ||| || | |||||||| Sbjct: 1252 catcggagaaaacccaagggccggaatgcccaactgcctgatgaagcgtgaatccgtggt 1193 Query: 405 tgaagataagatctctggctttgctagttttccacccgaagagatgatagcctgttcaaa 464 ||||||||| ||||| ||||| ||||| |||||||| | ||| ||||||||||||||||| Sbjct: 1192 tgaagataaaatctcaggcttagctagctttccacctgcagatatgatagcctgttcaaa 1133 Query: 465 cacagaccaccatgggtttgacgcattggctggtgt 500 ||||||||||| || ||||| ||||||| |||||| Sbjct: 1132 tacagaccaccaaggatttgatgcattggttggtgt 1097
>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full insert sequence Length = 2131 Score = 238 bits (120), Expect = 2e-59 Identities = 237/276 (85%) Strand = Plus / Minus Query: 225 gaatcagcctttgaaggagctcagcgctctgataagatgttgatacacttcgatgcccct 284 |||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||| Sbjct: 882 gaatcaacctttgaaggagctcagtgctctaataatatgttcatacactttgatgcccct 823 Query: 285 caggaacactttatcctccagaaactcgttatgatcgtgaagcaatattggagtatttat 344 ||||| |||||||||||||||||||| |||| || ||||| ||||| ||||| ||| | Sbjct: 822 taggaatactttatcctccagaaactcattattgtcatgaagtaatataggagtgtttgt 763 Query: 345 cattggagaaaacccaagggctggaacacccatctgcctcacgaatcgggcgtccgtggt 404 ||| ||||||||||||||||| |||| |||| |||||| | ||| || | |||||||| Sbjct: 762 catcggagaaaacccaagggccggaatgcccaactgcctgatgaagcgtgaatccgtggt 703 Query: 405 tgaagataagatctctggctttgctagttttccacccgaagagatgatagcctgttcaaa 464 ||||||||| ||||| ||||| ||||| |||||||| | ||| ||||||||||||||||| Sbjct: 702 tgaagataaaatctcaggcttagctagctttccacctgcagatatgatagcctgttcaaa 643 Query: 465 cacagaccaccatgggtttgacgcattggctggtgt 500 ||||||||||| || ||||| ||||||| |||||| Sbjct: 642 tacagaccaccaaggatttgatgcattggttggtgt 607
>dbj|AK060502.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D07, full insert sequence Length = 1629 Score = 238 bits (120), Expect = 2e-59 Identities = 237/276 (85%) Strand = Plus / Minus Query: 225 gaatcagcctttgaaggagctcagcgctctgataagatgttgatacacttcgatgcccct 284 |||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||| Sbjct: 1366 gaatcaacctttgaaggagctcagtgctctaataatatgttcatacactttgatgcccct 1307 Query: 285 caggaacactttatcctccagaaactcgttatgatcgtgaagcaatattggagtatttat 344 ||||| |||||||||||||||||||| |||| || ||||| ||||| ||||| ||| | Sbjct: 1306 taggaatactttatcctccagaaactcattattgtcatgaagtaatataggagtgtttgt 1247 Query: 345 cattggagaaaacccaagggctggaacacccatctgcctcacgaatcgggcgtccgtggt 404 ||| ||||||||||||||||| |||| |||| |||||| | ||| || | |||||||| Sbjct: 1246 catcggagaaaacccaagggccggaatgcccaactgcctgatgaagcgtgaatccgtggt 1187 Query: 405 tgaagataagatctctggctttgctagttttccacccgaagagatgatagcctgttcaaa 464 ||||||||| ||||| ||||| ||||| |||||||| | ||| ||||||||||||||||| Sbjct: 1186 tgaagataaaatctcaggcttagctagctttccacctgcagatatgatagcctgttcaaa 1127 Query: 465 cacagaccaccatgggtttgacgcattggctggtgt 500 ||||||||||| || ||||| ||||||| |||||| Sbjct: 1126 tacagaccaccaaggatttgatgcattggttggtgt 1091
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Minus Query: 322 tgaagcaatattggagtatttatcattggagaaaacccaagggctggaacacccatctgc 381 ||||| ||||| ||||| ||| |||| ||||||||||||||||| |||| |||| |||| Sbjct: 5635844 tgaagtaatataggagtgtttgtcatcggagaaaacccaagggccggaatgcccaactgc 5635785 Query: 382 ctcacgaatcgggcgtccgtggttgaagataagatctctggctttgctagttttccaccc 441 || | ||| || | ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 5635784 ctgatgaagcgtgaatccgtggttgaagataaaatctcaggcttagctagctttccacct 5635725 Query: 442 gaagagatgatagcctgttcaaacacagaccaccatgggtttgacgcattggctggtgt 500 | ||| ||||||||||||||||| ||||||||||| || ||||| ||||||| |||||| Sbjct: 5635724 gcagatatgatagcctgttcaaatacagaccaccaaggatttgatgcattggttggtgt 5635666 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 225 gaatcagcctttgaaggagctcagcgctctgataagatgttgatacacttcgatgcccct 284 |||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||| Sbjct: 5636019 gaatcaacctttgaaggagctcagtgctctaataatatgttcatacactttgatgcccct 5635960 Query: 285 caggaacactttatcctccagaaact 310 ||||| ||||||||||||||||||| Sbjct: 5635959 taggaatactttatcctccagaaact 5635934
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Minus Query: 322 tgaagcaatattggagtatttatcattggagaaaacccaagggctggaacacccatctgc 381 ||||| ||||| ||||| ||| |||| ||||||||||||||||| |||| |||| |||| Sbjct: 27991 tgaagtaatataggagtgtttgtcatcggagaaaacccaagggccggaatgcccaactgc 27932 Query: 382 ctcacgaatcgggcgtccgtggttgaagataagatctctggctttgctagttttccaccc 441 || | ||| || | ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 27931 ctgatgaagcgtgaatccgtggttgaagataaaatctcaggcttagctagctttccacct 27872 Query: 442 gaagagatgatagcctgttcaaacacagaccaccatgggtttgacgcattggctggtgt 500 | ||| ||||||||||||||||| ||||||||||| || ||||| ||||||| |||||| Sbjct: 27871 gcagatatgatagcctgttcaaatacagaccaccaaggatttgatgcattggttggtgt 27813 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 225 gaatcagcctttgaaggagctcagcgctctgataagatgttgatacacttcgatgcccct 284 |||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||| Sbjct: 28166 gaatcaacctttgaaggagctcagtgctctaataatatgttcatacactttgatgcccct 28107 Query: 285 caggaacactttatcctccagaaact 310 ||||| ||||||||||||||||||| Sbjct: 28106 taggaatactttatcctccagaaact 28081
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 319 tcgtgaagcaatattggagtatttatcattg 349 |||||||| ||||||| |||||||||||||| Sbjct: 1103737 tcgtgaaggaatattgaagtatttatcattg 1103767
>ref|XM_483309.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 303 cagaaactcgttatgatcgtgaagcaatattggagtatttatcattggagaaaacccaa 361 ||||||||| || ||||| || |||||||| || || ||| ||||||||||||| |||| Sbjct: 1263 cagaaactcattgtgatcatggagcaatatcggtgtgtttgtcattggagaaaaaccaa 1205
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 319 tcgtgaagcaatattggagtatttatcattg 349 |||||||| ||||||| |||||||||||||| Sbjct: 1105867 tcgtgaaggaatattgaagtatttatcattg 1105897
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 tgaagcaatattggagtattta 343 |||||||||||||||||||||| Sbjct: 1032199 tgaagcaatattggagtattta 1032220
>gb|AF411058.1| Homo sapiens clone BAC_22700 cytotoxic T-lymphocyte-associated protein 4 (CTLA4) and inducible T-cell co-stimulator (ICOS) genes, complete cds; and endogenous virus HERV-H, partial sequence Length = 181654 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 ttccattatttcagaaaaagt 79 ||||||||||||||||||||| Sbjct: 7632 ttccattatttcagaaaaagt 7612
>ref|XM_717475.1| Candida albicans SC5314 hypothetical protein (CaO19_1524), mRNA Length = 1476 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 gatttccattatttcagaaaa 76 ||||||||||||||||||||| Sbjct: 1021 gatttccattatttcagaaaa 1041
>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence Length = 214292 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 tttccattatttcagaaaaag 78 ||||||||||||||||||||| Sbjct: 112214 tttccattatttcagaaaaag 112234
>emb|CR974589.6| Mouse DNA sequence from clone RP23-77B14 on chromosome 12, complete sequence Length = 198849 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 atttcagaaaaagtttattct 86 ||||||||||||||||||||| Sbjct: 117448 atttcagaaaaagtttattct 117428
>gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, complete sequence Length = 196622 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 ttccattatttcagaaaaagt 79 ||||||||||||||||||||| Sbjct: 183445 ttccattatttcagaaaaagt 183425
>gb|AC148307.3| Pan troglodytes BAC clone RP43-44G20 from chromosome 11, complete sequence Length = 199161 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 358 ccaagggctggaacacccatctgcctcac 386 |||||||||||||| ||||||||||||| Sbjct: 171929 ccaagggctggaacctccatctgcctcac 171957
>gb|AC010138.6| Homo sapiens BAC clone RP11-175H4 from 2, complete sequence Length = 160970 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 ttccattatttcagaaaaagt 79 ||||||||||||||||||||| Sbjct: 21549 ttccattatttcagaaaaagt 21529
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 aatacaataatgttacaacttatgt 215 |||| |||||||||||||||||||| Sbjct: 60226 aataaaataatgttacaacttatgt 60202
>gb|BC082515.1| Xenopus tropicalis MGC89261 protein, mRNA (cDNA clone MGC:89261 IMAGE:6976598), complete cds Length = 4456 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gttatgatcgtgaagcaata 331 |||||||||||||||||||| Sbjct: 1832 gttatgatcgtgaagcaata 1851
>gb|AC161534.5| Mus musculus chromosome 1, clone RP24-127D13, complete sequence Length = 137652 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atttccattatttcagaaaa 76 |||||||||||||||||||| Sbjct: 893 atttccattatttcagaaaa 912
>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence Length = 187629 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 177084 aatattggagtatttatcat 177065 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 166231 aatattggagtatttatcat 166212 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 155374 aatattggagtatttatcat 155355 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 144530 aatattggagtatttatcat 144511 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 103113 aatattggagtatttatcat 103132
>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence Length = 175990 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 14003 aatattggagtatttatcat 13984
>ref|XM_992151.1| PREDICTED: Mus musculus H3 histone, family 3B (H3f3b), mRNA Length = 3382 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 2886 tctgtggcttggagcatgttggtt 2909
>ref|XM_915849.1| PREDICTED: Mus musculus H3 histone, family 3B (H3f3b), mRNA Length = 3376 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 2882 tctgtggcttggagcatgttggtt 2905
>ref|XM_895309.1| PREDICTED: Mus musculus H3 histone, family 3B (H3f3b), mRNA Length = 3378 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 2882 tctgtggcttggagcatgttggtt 2905
>gb|AC005166.1| Homo sapiens PAC clone RP5-905M6 from 7, complete sequence Length = 108245 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 atgatcgtgaagcaatattg 334 |||||||||||||||||||| Sbjct: 45636 atgatcgtgaagcaatattg 45617
>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence Length = 209207 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 91747 aatattggagtatttatcat 91728 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 50328 aatattggagtatttatcat 50347
>gb|AC146237.2| Pan troglodytes BAC clone RP43-31L18 from 7, complete sequence Length = 167875 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 atgatcgtgaagcaatattg 334 |||||||||||||||||||| Sbjct: 72668 atgatcgtgaagcaatattg 72649
>emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, complete sequence Length = 136520 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cccaagggctggaacaccca 376 |||||||||||||||||||| Sbjct: 90031 cccaagggctggaacaccca 90012
>gb|AE004307.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 215 of 251 of the complete chromosome Length = 14930 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tggagcatgatggttgtggcatcg 144 |||||||||||| ||||||||||| Sbjct: 8597 tggagcatgatgcttgtggcatcg 8620
>ref|XM_949015.1| Theileria annulata strain Ankara hypothetical protein (TA02830) partial mRNA Length = 1536 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tcagaaaaagtttattctga 88 |||||||||||||||||||| Sbjct: 1303 tcagaaaaagtttattctga 1322
>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence Length = 170201 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 137772 aatattggagtatttatcat 137753 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 126917 aatattggagtatttatcat 126898 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 85507 aatattggagtatttatcat 85526 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 74650 aatattggagtatttatcat 74669 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 63809 aatattggagtatttatcat 63828
>gb|AC142301.1| Pan troglodytes BAC clone RP43-127N2 from Y, complete sequence Length = 108043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 102557 aatattggagtatttatcat 102538 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 91713 aatattggagtatttatcat 91694 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 80857 aatattggagtatttatcat 80838 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 39444 aatattggagtatttatcat 39463 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 28587 aatattggagtatttatcat 28606
>gb|AC139193.1| Pan troglodytes BAC clone RP43-131F11 from Y, complete sequence Length = 36650 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3940 aatattggagtatttatcat 3959
>gb|AC069233.16| Homo sapiens 3 BAC RP11-95H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154204 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 atttccattatttcagaaaa 76 |||||||||||||||||||| Sbjct: 81480 atttccattatttcagaaaa 81461
>gb|AF512556.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2) gene, complete cds Length = 105904 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 423 ctcaggaacactttatcctc 442
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 11297918 aatattggagtatttatcat 11297899 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 11256499 aatattggagtatttatcat 11256518 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3406517 aatattggagtatttatcat 3406498 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3365100 aatattggagtatttatcat 3365119 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3354256 aatattggagtatttatcat 3354275 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3343399 aatattggagtatttatcat 3343418 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3332546 aatattggagtatttatcat 3332565 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3300475 aatattggagtatttatcat 3300494 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3289623 aatattggagtatttatcat 3289642 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3278782 aatattggagtatttatcat 3278801
>dbj|AK022394.1| Homo sapiens cDNA FLJ12332 fis, clone MAMMA1002174 Length = 3190 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 atttccattatttcagaaaa 76 |||||||||||||||||||| Sbjct: 897 atttccattatttcagaaaa 878
>gb|AC022662.6| Homo sapiens chromosome 18, clone RP11-29O13, complete sequence Length = 144192 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggatgagccctaaccagttt 110 |||||||||||||||||||| Sbjct: 41343 ggatgagccctaaccagttt 41362
>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence Length = 174831 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 155445 ctcaggaacactttatcctc 155426
>gb|AC008973.6| Homo sapiens chromosome 5 clone CTD-2380L12, complete sequence Length = 117032 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 102551 ctcaggaacactttatcctc 102532
>dbj|AK020478.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430068D06 product:inferred: H3 histone, family 3B / putative {Mus musculus}, full insert sequence Length = 1151 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 740 tctgtggcttggagcatgttggtt 763
>gb|AC025180.6| Homo sapiens chromosome 5 clone CTD-2175A23, complete sequence Length = 82061 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 807 ctcaggaacactttatcctc 788
>dbj|AK044933.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014G24 product:H3 histone, family 3B, full insert sequence Length = 3305 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 3075 tctgtggcttggagcatgttggtt 3098
>gb|AC034215.4|AC034215 Homo sapiens chromosome 5 clone CTD-2001K4, complete sequence Length = 142116 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tcaggaacactttatcctcc 303 |||||||||||||||||||| Sbjct: 42202 tcaggaacactttatcctcc 42183
>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete sequence Length = 170833 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 129724 aatattggagtatttatcat 129743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 118872 aatattggagtatttatcat 118891 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 108031 aatattggagtatttatcat 108050
>ref|NM_001008189.1| Xenopus tropicalis MGC89261 protein (MGC89261), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gttatgatcgtgaagcaata 331 |||||||||||||||||||| Sbjct: 1832 gttatgatcgtgaagcaata 1851
>gb|AC016106.7| Homo sapiens chromosome 18, clone RP11-26L13, complete sequence Length = 59320 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggatgagccctaaccagttt 110 |||||||||||||||||||| Sbjct: 15808 ggatgagccctaaccagttt 15789
>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence Length = 103356 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 66128 aatattggagtatttatcat 66147
>gb|AC053490.2|AC053490 Homo sapiens BAC clone RP11-140H23 from Y, complete sequence Length = 103432 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 94687 aatattggagtatttatcat 94668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 30873 aatattggagtatttatcat 30892
>dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:26D12, complete sequence Length = 156014 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cccaagggctggaacaccca 376 |||||||||||||||||||| Sbjct: 750 cccaagggctggaacaccca 769
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 3044683 aatattggagtatttatcat 3044664 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 2991705 aatattggagtatttatcat 2991724 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 1419448 aatattggagtatttatcat 1419429 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 1355634 aatattggagtatttatcat 1355653
>gb|AF062039.1|AF062039 Homo sapiens integrin alpha-2 subunit (ITGA2) gene, ITGA2-1 allele, partial cds Length = 3990 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 1994 ctcaggaacactttatcctc 2013
>emb|BX908394.9| Zebrafish DNA sequence from clone DKEY-106H23 in linkage group 18, complete sequence Length = 102817 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tatttcagaaaaagtttatt 84 |||||||||||||||||||| Sbjct: 86859 tatttcagaaaaagtttatt 86878 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tatttcagaaaaagtttatt 84 |||||||||||||||||||| Sbjct: 85340 tatttcagaaaaagtttatt 85359
>emb|BX469936.11| Zebrafish DNA sequence from clone DKEY-32I12 in linkage group 19, complete sequence Length = 141772 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcagatttccattatttcag 72 |||||||||||||||||||| Sbjct: 110242 gcagatttccattatttcag 110261
>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia (DAZ) locus Length = 85674 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 33807 aatattggagtatttatcat 33788
>gb|AC000021.1|HSAC000021 Origins of the DAZ gene cluster on the human Y chromosome: an autosomal gene was transposed, then repeatedly amplified and pruned, complete sequence Length = 40328 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aatattggagtatttatcat 347 |||||||||||||||||||| Sbjct: 5314 aatattggagtatttatcat 5295
>gb|AC132909.14| Mus musculus chromosome 1, clone RP24-298H1, complete sequence Length = 185140 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atttccattatttcagaaaa 76 |||||||||||||||||||| Sbjct: 171418 atttccattatttcagaaaa 171437
>gb|U31518.1|HSU31518 Human integrin alpha 2 subunit (ITGA2) gene, distal 5' regulatory region Length = 2778 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ctcaggaacactttatcctc 302 |||||||||||||||||||| Sbjct: 1907 ctcaggaacactttatcctc 1926
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tctgtggcttggagcatgatggtt 135 |||||||||||||||||| ||||| Sbjct: 37781 tctgtggcttggagcatgttggtt 37758 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,412,111 Number of Sequences: 3902068 Number of extensions: 4412111 Number of successful extensions: 85457 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85239 Number of HSP's gapped (non-prelim): 218 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)