ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 7e-62
2gb|AY103949.1| Zea mays PCO103424 mRNA sequence 212 1e-51
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 7e-25
4gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 123 7e-25
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
6gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital ... 46 0.14
7gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital... 46 0.14
8gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8)... 46 0.14
9gb|AY611008.1| Bos taurus clone 33E10 repeat region D6Z1 44 0.54
10gb|AC150524.3| Bos taurus BAC CH240-89P8 (Children's Hospital O... 44 0.54
11gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence 44 0.54
12gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence 44 0.54
13gb|DP000008.1| Bos taurus target 1 genomic scaffold 44 0.54
14gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete s... 42 2.1
15emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on ch... 42 2.1
16gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.1
17gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 42 2.1
18emb|AL079336.27|HSJ662M14 Human DNA sequence from clone RP4-662M... 42 2.1
19ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.1
20gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence 42 2.1
21emb|BX820631.1|CNS0AA0U Arabidopsis thaliana Full-length cDNA Co... 42 2.1
22gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, co... 40 8.4
23ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 ... 40 8.4
24gb|AF042836.1| Homo sapiens cystathionine beta-synthase (CBS) ge... 40 8.4
25gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence 40 8.4
26gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
27gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome... 40 8.4
28emb|X95391.1|BTINRA206 B.taurus microsatellite INRA206 DNA 40 8.4
29gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 8.4
30gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.4
31gb|AC131249.43| Medicago truncatula clone mth2-8p18, complete se... 40 8.4
32emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 40 8.4
33emb|AL604002.8| Mouse DNA sequence from clone RP23-386F6 on chro... 40 8.4
34gb|AC008501.5| Homo sapiens chromosome 5 clone CTC-439N6, comple... 40 8.4
35gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, comple... 40 8.4
36gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, comp... 40 8.4
37dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 8.4
38dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 8.4
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
41gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence 40 8.4
42gb|AC008779.5|AC008779 Homo sapiens chromosome 5 clone CTD-2023H... 40 8.4
43gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
44dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
45dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
46dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
47dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22... 40 8.4
48dbj|BS000232.1| Pan troglodytes chromosome 22 clone:PTB-071B01, ... 40 8.4
49emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on ch... 40 8.4
50dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.4
51dbj|AP002085.1| Homo sapiens genomic DNA, chromosome 21, BAC clo... 40 8.4
52dbj|AP001630.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.4
53dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.4
54dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
55dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4 
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full
            insert sequence
          Length = 2797

 Score =  246 bits (124), Expect = 7e-62
 Identities = 220/252 (87%)
 Strand = Plus / Minus

                                                                        
Query: 358  ctggtgctgccacgggcatcgctgcaggttgtgcgtagctctgctgcgggtaggcctggg 417
            ||||||| ||||| | ||| |||| ||||||||| ||| | || || | ||||||||| |
Sbjct: 2481 ctggtgccgccaccgccattgctgaaggttgtgcataggtttgttgtgtgtaggcctgag 2422

                                                                        
Query: 418  cagggtatgtgggaggataggcaccataagcggctgcttgaggagcagattggggcattt 477
            | |||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct: 2421 cggggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcattt 2362

                                                                        
Query: 478  gctggctgtagtcgtaagctccatatgcaggataagcagcctgttgtgcgtaagcagccc 537
            | |||||||||||||||| |||||| ||||||||||  |||||| |||| |||||||| |
Sbjct: 2361 gatggctgtagtcgtaagttccatacgcaggataagtggcctgtggtgcataagcagctc 2302

                                                                        
Query: 538  cccattgctgcgctgatgcttcagaagtcgcaggccaaactgcaggattatgagcatttg 597
            ||||||| ||| | ||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct: 2301 cccattgttgccccgatgcttcagatgtcgctggccaaactggaggattatgagcatttg 2242

                        
Query: 598  gatcagttccca 609
            ||||||||||||
Sbjct: 2241 gatcagttccca 2230



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 304  caggttgctgagggtaagctgctgcaggtgcc 335
            |||||||||||||||||||||| || ||||||
Sbjct: 2523 caggttgctgagggtaagctgccgccggtgcc 2492
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>gb|AY103949.1| Zea mays PCO103424 mRNA sequence
          Length = 1035

 Score =  212 bits (107), Expect = 1e-51
 Identities = 200/231 (86%)
 Strand = Plus / Minus

                                                                       
Query: 378 gctgcaggttgtgcgtagctctgctgcgggtaggcctgggcagggtatgtgggaggatag 437
           |||||||| |||| |||||| || || |  |||||||| |||| |||||| |||||||| 
Sbjct: 634 gctgcaggctgtgggtagctttgttgtgtataggcctgtgcagagtatgttggaggataa 575

                                                                       
Query: 438 gcaccataagcggctgcttgaggagcagattggggcatttgctggctgtagtcgtaagct 497
           |||||||| || ||||||||||||||||  ||||||||||| |||||||||||||||| |
Sbjct: 574 gcaccataggcagctgcttgaggagcaggctggggcatttgatggctgtagtcgtaagtt 515

                                                                       
Query: 498 ccatatgcaggataagcagcctgttgtgcgtaagcagccccccattgctgcgctgatgct 557
           |||||||||||||| |||||||| ||||| |||| ||| |||||||| ||| | ||||||
Sbjct: 514 ccatatgcaggatatgcagcctgctgtgcataagaagctccccattgttgcccagatgct 455

                                                              
Query: 558 tcagaagtcgcaggccaaactgcaggattatgagcatttggatcagttccc 608
           |||||||| ||||||||||| | ||||||   |||||||||||||||||||
Sbjct: 454 tcagaagttgcaggccaaacaggaggattggaagcatttggatcagttccc 404
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 7e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                           
Query: 420     gggtatgtgggaggataggcaccataagcggctgcttgaggagcagattggggcatttgc 479
               |||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||| 
Sbjct: 5729606 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcatttga 5729665

                                                 
Query: 480     tggctgtagtcgtaagctccatatgcaggataag 513
               |||||||||||||||| |||||| ||||||||||
Sbjct: 5729666 tggctgtagtcgtaagttccatacgcaggataag 5729699



 Score =  113 bits (57), Expect = 7e-22
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                           
Query: 517     cctgttgtgcgtaagcagccccccattgctgcgctgatgcttcagaagtcgcaggccaaa 576
               ||||| |||| |||||||| |||||||| ||| | ||||||||||| ||||| |||||||
Sbjct: 5729964 cctgtggtgcataagcagctccccattgttgccccgatgcttcagatgtcgctggccaaa 5730023

                                                
Query: 577     ctgcaggattatgagcatttggatcagttccca 609
               ||| |||||||||||||||||||||||||||||
Sbjct: 5730024 ctggaggattatgagcatttggatcagttccca 5730056



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 304     caggttgctgagggtaagctgctgcaggtgcc 335
               |||||||||||||||||||||| || ||||||
Sbjct: 5729403 caggttgctgagggtaagctgccgccggtgcc 5729434



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 117     ctgctgctgccaaaaaacct 136
               ||||||||||||||||||||
Sbjct: 5352565 ctgctgctgccaaaaaacct 5352546
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score =  123 bits (62), Expect = 7e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                          
Query: 420    gggtatgtgggaggataggcaccataagcggctgcttgaggagcagattggggcatttgc 479
              |||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||| 
Sbjct: 101565 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcatttga 101506

                                                
Query: 480    tggctgtagtcgtaagctccatatgcaggataag 513
              |||||||||||||||| |||||| ||||||||||
Sbjct: 101505 tggctgtagtcgtaagttccatacgcaggataag 101472



 Score =  113 bits (57), Expect = 7e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                          
Query: 517    cctgttgtgcgtaagcagccccccattgctgcgctgatgcttcagaagtcgcaggccaaa 576
              ||||| |||| |||||||| |||||||| ||| | ||||||||||| ||||| |||||||
Sbjct: 101207 cctgtggtgcataagcagctccccattgttgccccgatgcttcagatgtcgctggccaaa 101148

                                               
Query: 577    ctgcaggattatgagcatttggatcagttccca 609
              ||| |||||||||||||||||||||||||||||
Sbjct: 101147 ctggaggattatgagcatttggatcagttccca 101115



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 304    caggttgctgagggtaagctgctgcaggtgcc 335
              |||||||||||||||||||||| || ||||||
Sbjct: 101768 caggttgctgagggtaagctgccgccggtgcc 101737
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 7e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                           
Query: 420     gggtatgtgggaggataggcaccataagcggctgcttgaggagcagattggggcatttgc 479
               |||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||| 
Sbjct: 5728819 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcatttga 5728878

                                                 
Query: 480     tggctgtagtcgtaagctccatatgcaggataag 513
               |||||||||||||||| |||||| ||||||||||
Sbjct: 5728879 tggctgtagtcgtaagttccatacgcaggataag 5728912



 Score =  113 bits (57), Expect = 7e-22
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                           
Query: 517     cctgttgtgcgtaagcagccccccattgctgcgctgatgcttcagaagtcgcaggccaaa 576
               ||||| |||| |||||||| |||||||| ||| | ||||||||||| ||||| |||||||
Sbjct: 5729177 cctgtggtgcataagcagctccccattgttgccccgatgcttcagatgtcgctggccaaa 5729236

                                                
Query: 577     ctgcaggattatgagcatttggatcagttccca 609
               ||| |||||||||||||||||||||||||||||
Sbjct: 5729237 ctggaggattatgagcatttggatcagttccca 5729269



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 304     caggttgctgagggtaagctgctgcaggtgcc 335
               |||||||||||||||||||||| || ||||||
Sbjct: 5728616 caggttgctgagggtaagctgccgccggtgcc 5728647



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 117     ctgctgctgccaaaaaacct 136
               ||||||||||||||||||||
Sbjct: 5351780 ctgctgctgccaaaaaacct 5351761
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>gb|AC149676.2| Bos taurus  BAC CH240-43C16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 168416

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 128   aaaaaacctgcctgccaatgcaa 150
             |||||||||||||||||||||||
Sbjct: 57926 aaaaaacctgcctgccaatgcaa 57948
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>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 128    aaaaaacctgcctgccaatgcaa 150
              |||||||||||||||||||||||
Sbjct: 146001 aaaaaacctgcctgccaatgcaa 146023
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>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 127   caaaaaacctgcctgccaatgca 149
             |||||||||||||||||||||||
Sbjct: 68132 caaaaaacctgcctgccaatgca 68154
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>gb|AY611008.1| Bos taurus clone 33E10 repeat region D6Z1
          Length = 8247

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 128  aaaaaacctgcctgccaatgca 149
            ||||||||||||||||||||||
Sbjct: 5948 aaaaaacctgcctgccaatgca 5969
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>gb|AC150524.3| Bos taurus  BAC CH240-89P8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 189720

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   aaaaaacctgcctgccaatgca 149
             ||||||||||||||||||||||
Sbjct: 33197 aaaaaacctgcctgccaatgca 33176
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>gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence
          Length = 157165

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 128    aaaaaacctgcctgccaatgca 149
              ||||||||||||||||||||||
Sbjct: 156677 aaaaaacctgcctgccaatgca 156656
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>gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence
          Length = 203696

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 128  aaaaaacctgcctgccaatgca 149
            ||||||||||||||||||||||
Sbjct: 9012 aaaaaacctgcctgccaatgca 8991
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 128    aaaaaacctgcctgccaatgca 149
              ||||||||||||||||||||||
Sbjct: 599516 aaaaaacctgcctgccaatgca 599495



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     aacctgcctgccaatgcaaa 151
               ||||||||||||||||||||
Sbjct: 1677175 aacctgcctgccaatgcaaa 1677156
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>gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete sequence
          Length = 82977

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 589   gagcatttggatcagttccca 609
             |||||||||||||||||||||
Sbjct: 33447 gagcatttggatcagttccca 33427
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>emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on chromosome 10 Contains a
             novel gene, gene FLJ32104, a novel gene, the RBP3 gene for
             retinol binding protein 3, the GDF2 gene for growth
             differentiation factor 2, the GDF10 gene for growth
             differentiation factor 10 and three CpG islands, complete
             sequence
          Length = 204512

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tacaactgcagctgctgcaaa 34
             |||||||||||||||||||||
Sbjct: 52819 tacaactgcagctgctgcaaa 52799
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     gctgctgccaaaaaacctgcc 139
               |||||||||||||||||||||
Sbjct: 3798832 gctgctgccaaaaaacctgcc 3798812
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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   cgcctgtgctggggtgggcac 358
             |||||||||||||||||||||
Sbjct: 70123 cgcctgtgctggggtgggcac 70143
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>emb|AL079336.27|HSJ662M14 Human DNA sequence from clone RP4-662M14 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 117077

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   ttgaggagcagattggggcat 475
             |||||||||||||||||||||
Sbjct: 28077 ttgaggagcagattggggcat 28057
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>ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus similar to prolyl
           endopeptidase-like (LOC586521), partial mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 115 gcctgctgctgccaaaaaacc 135
           |||||||||||||||||||||
Sbjct: 3   gcctgctgctgccaaaaaacc 23
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>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   aaaaacctgcctgccaatgca 149
             |||||||||||||||||||||
Sbjct: 81677 aaaaacctgcctgccaatgca 81697
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>emb|BX820631.1|CNS0AA0U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH54ZC08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2933

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 atgcaggataagcagcctgtt 522
           |||||||||||||||||||||
Sbjct: 929 atgcaggataagcagcctgtt 949
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>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    aacctgcctgccaatgcaaa 151
              ||||||||||||||||||||
Sbjct: 112648 aacctgcctgccaatgcaaa 112629
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>ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 protein (LOC457242),
           mRNA
          Length = 1126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 300 acagcaggttgctgagggtaagctgctg 327
           ||||||| |||| |||||||||||||||
Sbjct: 288 acagcagattgcagagggtaagctgctg 315
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>gb|AF042836.1| Homo sapiens cystathionine beta-synthase (CBS) gene, major and minor
             alternative splice products, complete cds
          Length = 28046

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   gctggggtgggcactggtgc 364
             ||||||||||||||||||||
Sbjct: 20358 gctggggtgggcactggtgc 20339
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>gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence
          Length = 183383

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    aacctgcctgccaatgcaaa 151
              ||||||||||||||||||||
Sbjct: 156959 aacctgcctgccaatgcaaa 156940
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>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0008E07, complete sequence
          Length = 146679

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    caggttgctgagggtaagct 323
              ||||||||||||||||||||
Sbjct: 105922 caggttgctgagggtaagct 105941
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>gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome 1, complete sequence
          Length = 201732

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caactgcagctgctgcaaat 35
             ||||||||||||||||||||
Sbjct: 25890 caactgcagctgctgcaaat 25909
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>emb|X95391.1|BTINRA206 B.taurus microsatellite INRA206 DNA
          Length = 508

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 aacctgcctgccaatgcaaa 151
           ||||||||||||||||||||
Sbjct: 445 aacctgcctgccaatgcaaa 464
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>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     caactgcagctgctgcaaat 35
              ||||||||||||||||||||
Sbjct: 146999 caactgcagctgctgcaaat 147018
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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ctgctgctgccaaaaaacct 136
             ||||||||||||||||||||
Sbjct: 58733 ctgctgctgccaaaaaacct 58714
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>gb|AC131249.43| Medicago truncatula clone mth2-8p18, complete sequence
          Length = 104866

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   tatgagcatttggatcagtt 605
             ||||||||||||||||||||
Sbjct: 47512 tatgagcatttggatcagtt 47531
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>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   tgacaacaccaatctagaaatcag 254
             |||||||||| |||||||||||||
Sbjct: 31973 tgacaacaccgatctagaaatcag 31996
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>emb|AL604002.8| Mouse DNA sequence from clone RP23-386F6 on chromosome 11, complete
              sequence
          Length = 142134

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    tgctggggtgggcactggtg 363
              ||||||||||||||||||||
Sbjct: 139153 tgctggggtgggcactggtg 139134
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>gb|AC008501.5| Homo sapiens chromosome 5 clone CTC-439N6, complete sequence
          Length = 176903

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 456    tgaggagcagattggggcat 475
              ||||||||||||||||||||
Sbjct: 130513 tgaggagcagattggggcat 130532
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>gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, complete sequence
          Length = 121272

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   tgaggagcagattggggcat 475
             ||||||||||||||||||||
Sbjct: 77690 tgaggagcagattggggcat 77671
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>gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, complete sequence
          Length = 165604

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   tgaggagcagattggggcat 475
             ||||||||||||||||||||
Sbjct: 84019 tgaggagcagattggggcat 84000
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>dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630064C07 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   caactgcagctgctgcaaat 35
            ||||||||||||||||||||
Sbjct: 1352 caactgcagctgctgcaaat 1333
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>dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630006G22 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   caactgcagctgctgcaaat 35
            ||||||||||||||||||||
Sbjct: 1354 caactgcagctgctgcaaat 1335
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      caggttgctgagggtaagct 323
                ||||||||||||||||||||
Sbjct: 12338444 caggttgctgagggtaagct 12338463
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      caggttgctgagggtaagct 323
                ||||||||||||||||||||
Sbjct: 31963216 caggttgctgagggtaagct 31963235



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      caggttgctgagggtaagct 323
                ||||||||||||||||||||
Sbjct: 10209952 caggttgctgagggtaagct 10209933
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>gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence
          Length = 106143

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   gcaggataagcagcctgttg 523
             ||||||||||||||||||||
Sbjct: 86246 gcaggataagcagcctgttg 86265
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>gb|AC008779.5|AC008779 Homo sapiens chromosome 5 clone CTD-2023H18, complete sequence
          Length = 123275

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    tgaggagcagattggggcat 475
              ||||||||||||||||||||
Sbjct: 119933 tgaggagcagattggggcat 119914
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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ctgctgctgccaaaaaacct 136
             ||||||||||||||||||||
Sbjct: 82880 ctgctgctgccaaaaaacct 82861
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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  caggttgctgagggtaagct 323
            ||||||||||||||||||||
Sbjct: 5030 caggttgctgagggtaagct 5049
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    caggttgctgagggtaagct 323
              ||||||||||||||||||||
Sbjct: 149294 caggttgctgagggtaagct 149313
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>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   caggttgctgagggtaagct 323
             ||||||||||||||||||||
Sbjct: 75266 caggttgctgagggtaagct 75247
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>dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22, map 22, complete
             sequences
          Length = 163962

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gctggggtgggcactggtgc 364
             ||||||||||||||||||||
Sbjct: 27957 gctggggtgggcactggtgc 27976
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>dbj|BS000232.1| Pan troglodytes chromosome 22 clone:PTB-071B01, map 22, complete
              sequences
          Length = 190322

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    gctggggtgggcactggtgc 364
              ||||||||||||||||||||
Sbjct: 161516 gctggggtgggcactggtgc 161535
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>emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on chromosome 9, complete
             sequence
          Length = 50450

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   gtaggtacacatgcccatgc 228
             ||||||||||||||||||||
Sbjct: 21698 gtaggtacacatgcccatgc 21679
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>dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, section 92/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    gctggggtgggcactggtgc 364
              ||||||||||||||||||||
Sbjct: 216634 gctggggtgggcactggtgc 216653
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>dbj|AP002085.1| Homo sapiens genomic DNA, chromosome 21, BAC clone:KB274G10,
             MX1-D21S171 region, complete sequence
          Length = 97015

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gctggggtgggcactggtgc 364
             ||||||||||||||||||||
Sbjct: 42164 gctggggtgggcactggtgc 42183
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>dbj|AP001630.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1151C12, MX1-D21S171
              region, complete sequence
          Length = 151846

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    gctggggtgggcactggtgc 364
              ||||||||||||||||||||
Sbjct: 122211 gctggggtgggcactggtgc 122230
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>dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2007G4, MX1-D21S171
             region, complete sequence
          Length = 148179

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gctggggtgggcactggtgc 364
             ||||||||||||||||||||
Sbjct: 20922 gctggggtgggcactggtgc 20941
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   caggttgctgagggtaagct 323
             ||||||||||||||||||||
Sbjct: 59943 caggttgctgagggtaagct 59962
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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0004B13
          Length = 142268

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    caggttgctgagggtaagct 323
              ||||||||||||||||||||
Sbjct: 134551 caggttgctgagggtaagct 134532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,111,744
Number of Sequences: 3902068
Number of extensions: 5111744
Number of successful extensions: 98222
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97905
Number of HSP's gapped (non-prelim): 317
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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