ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 240 4e-60
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 240 4e-60
3dbj|AK104407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
4dbj|AK073425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
5dbj|AK058728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
6gb|AY109873.1| Zea mays CL6571_1 mRNA sequence 143 7e-31
7ref|NM_122634.2| Arabidopsis thaliana binding AT5G27520 mRNA, co... 60 8e-06
8gb|AY122919.1| Arabidopsis thaliana unknown protein (At5g27520) ... 60 8e-06
9gb|AY063892.1| Arabidopsis thaliana unknown protein (At5g27520) ... 60 8e-06
10emb|BX829998.1|CNS0A1G2 Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
11emb|BX829889.1|CNS0A1G8 Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
12emb|BX829755.1|CNS0A18P Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
13emb|BX832081.1|CNS0A16M Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
14gb|AY089043.1| Arabidopsis thaliana clone 20865 mRNA, complete s... 60 8e-06
15gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chro... 60 8e-06
16gb|AC007123.1|AC007123 Arabidopsis thaliana BAC F21A20 from chro... 60 8e-06
17gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complet... 44 0.45
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
19dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
20dbj|AP008223.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
21gb|AC146045.3| Pan troglodytes BAC clone RP43-14B22 from 7, comp... 42 1.8
22gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, com... 42 1.8
23gb|AC027547.8| Homo sapiens chromosome 15, clone RP11-18P13, com... 42 1.8
24gb|BC073206.1| Xenopus laevis MGC80481 protein, mRNA (cDNA clone... 40 7.0
25emb|CR626887.6| Zebrafish DNA sequence from clone DKEY-46I14 in ... 40 7.0
26gb|AC098724.3| Mus musculus BAC clone RP23-3D14 from 4, complete... 40 7.0
27ref|XM_731488.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.0
28gb|AC116385.5| Mus musculus chromosome 5, clone RP23-17A11, comp... 40 7.0
29emb|AL354828.12| Human DNA sequence from clone RP11-274P12 on ch... 40 7.0
30emb|BX571838.9| Zebrafish DNA sequence from clone DKEY-205N7 in ... 40 7.0
31emb|BX537338.9| Zebrafish DNA sequence from clone DKEY-258E8 in ... 40 7.0
32gb|AC087233.6| Mus Musculus Chromosome 17 RP23-476A24, complete ... 40 7.0
33gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, comp... 40 7.0
34gb|AC015502.7| Homo sapiens, clone RP11-21H13, complete sequence 40 7.0
35dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
36gb|AC010146.13| Homo sapiens BAC clone RP11-355I13 from 2, compl... 40 7.0
37gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 40 7.0
38gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 7.0
39dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
40dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
41dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
42emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in... 40 7.0
43emb|AL935335.5| Zebrafish DNA sequence from clone CH211-244M22, ... 40 7.0
44gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosom... 40 7.0
45emb|AL606915.12| Mouse DNA sequence from clone RP23-185C16 on ch... 40 7.0 
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
              complete sequence
          Length = 164709

 Score =  240 bits (121), Expect = 4e-60
 Identities = 184/206 (89%)
 Strand = Plus / Plus

                                                                          
Query: 297    ttatgcactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcga 356
              |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct: 132305 ttatgcactcttgattctcttctgagaaacaaagagatatcgccgcagggcaagcagtga 132364

                                                                          
Query: 357    gatccaggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaac 416
               ||||| || ||  ||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 132365 aatccaagtaaatcttgaaatcttctcctttatcatcagcagcaatgcagaactcaggac 132424

                                                                          
Query: 417    cgnctttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntcca 476
               | ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 132425 agtcttgagtatctgagcatgtaatcctttgaagaagcctgggatgccttccttgctcca 132484

                                        
Query: 477    cattgcatgcatagnacccaacattg 502
              ||| ||||||| ||  ||||||||||
Sbjct: 132485 catggcatgcaaagcgcccaacattg 132510
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  240 bits (121), Expect = 4e-60
 Identities = 184/206 (89%)
 Strand = Plus / Plus

                                                                            
Query: 297      ttatgcactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcga 356
                |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct: 18964927 ttatgcactcttgattctcttctgagaaacaaagagatatcgccgcagggcaagcagtga 18964986

                                                                            
Query: 357      gatccaggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaac 416
                 ||||| || ||  ||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 18964987 aatccaagtaaatcttgaaatcttctcctttatcatcagcagcaatgcagaactcaggac 18965046

                                                                            
Query: 417      cgnctttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntcca 476
                 | ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 18965047 agtcttgagtatctgagcatgtaatcctttgaagaagcctgggatgccttccttgctcca 18965106

                                          
Query: 477      cattgcatgcatagnacccaacattg 502
                ||| ||||||| ||  ||||||||||
Sbjct: 18965107 catggcatgcaaagcgcccaacattg 18965132
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>dbj|AK104407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E01, full
            insert sequence
          Length = 1620

 Score =  240 bits (121), Expect = 4e-60
 Identities = 184/206 (89%)
 Strand = Plus / Minus

                                                                        
Query: 297  ttatgcactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcga 356
            |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1144 ttatgcactcttgattctcttctgagaaacaaagagatatcgccgcagggcaagcagtga 1085

                                                                        
Query: 357  gatccaggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaac 416
             ||||| || ||  ||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 1084 aatccaagtaaatcttgaaatcttctcctttatcatcagcagcaatgcagaactcaggac 1025

                                                                        
Query: 417  cgnctttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntcca 476
             | ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1024 agtcttgagtatctgagcatgtaatcctttgaagaagcctgggatgccttccttgctcca 965

                                      
Query: 477  cattgcatgcatagnacccaacattg 502
            ||| ||||||| ||  ||||||||||
Sbjct: 964  catggcatgcaaagcgcccaacattg 939
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>dbj|AK073425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044H10, full
            insert sequence
          Length = 1501

 Score =  240 bits (121), Expect = 4e-60
 Identities = 184/206 (89%)
 Strand = Plus / Minus

                                                                        
Query: 297  ttatgcactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcga 356
            |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1145 ttatgcactcttgattctcttctgagaaacaaagagatatcgccgcagggcaagcagtga 1086

                                                                        
Query: 357  gatccaggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaac 416
             ||||| || ||  ||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 1085 aatccaagtaaatcttgaaatcttctcctttatcatcagcagcaatgcagaactcaggac 1026

                                                                        
Query: 417  cgnctttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntcca 476
             | ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1025 agtcttgagtatctgagcatgtaatcctttgaagaagcctgggatgccttccttgctcca 966

                                      
Query: 477  cattgcatgcatagnacccaacattg 502
            ||| ||||||| ||  ||||||||||
Sbjct: 965  catggcatgcaaagcgcccaacattg 940
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>dbj|AK058728.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F07, full
            insert sequence
          Length = 1461

 Score =  240 bits (121), Expect = 4e-60
 Identities = 184/206 (89%)
 Strand = Plus / Minus

                                                                        
Query: 297  ttatgcactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcga 356
            |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1292 ttatgcactcttgattctcttctgagaaacaaagagatatcgccgcagggcaagcagtga 1233

                                                                        
Query: 357  gatccaggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaac 416
             ||||| || ||  ||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 1232 aatccaagtaaatcttgaaatcttctcctttatcatcagcagcaatgcagaactcaggac 1173

                                                                        
Query: 417  cgnctttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntcca 476
             | ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1172 agtcttgagtatctgagcatgtaatcctttgaagaagcctgggatgccttccttgctcca 1113

                                      
Query: 477  cattgcatgcatagnacccaacattg 502
            ||| ||||||| ||  ||||||||||
Sbjct: 1112 catggcatgcaaagcgcccaacattg 1087
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>gb|AY109873.1| Zea mays CL6571_1 mRNA sequence
          Length = 1001

 Score =  143 bits (72), Expect = 7e-31
 Identities = 157/186 (84%)
 Strand = Plus / Minus

                                                                       
Query: 302 cactcttgattctcttccgagaaacaaagaggtatcgccgcagggctagcagcgagatcc 361
           |||||||||| |||||| ||||||| || || || ||||||||||| |||||||||| ||
Sbjct: 670 cactcttgatcctcttctgagaaacgaaaagataccgccgcagggcaagcagcgagaccc 611

                                                                       
Query: 362 aggtgaactttgaaatcttctcttttatcatcagcagtaatgcagagctcagaaccgnct 421
           | |||||||| || |||||||| |||||||||||||| || || ||||||||||| |  |
Sbjct: 610 aagtgaacttcgagatcttctcctttatcatcagcagcaaggcggagctcagaactgctt 551

                                                                       
Query: 422 ttagtatctgagcatgtaatcctttgaagaagcctgggatcccttccttgntccacattg 481
           | || ||||||||||  |  ||||||||||||||||| || ||||||||| |||| || |
Sbjct: 550 taaggatctgagcattcaggcctttgaagaagcctggaatgccttccttgctccagatag 491

                 
Query: 482 catgca 487
           ||||||
Sbjct: 490 catgca 485
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>ref|NM_122634.2| Arabidopsis thaliana binding AT5G27520 mRNA, complete cds
          Length = 1309

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 948 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 889

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 888 aagcctttaaagaagcctaagatcccttc 860
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>gb|AY122919.1| Arabidopsis thaliana unknown protein (At5g27520) mRNA, complete cds
          Length = 997

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 887 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 828

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 827 aagcctttaaagaagcctaagatcccttc 799
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>gb|AY063892.1| Arabidopsis thaliana unknown protein (At5g27520) mRNA, complete cds
          Length = 1325

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 948 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 889

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 888 aagcctttaaagaagcctaagatcccttc 860
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>emb|BX829998.1|CNS0A1G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB52ZC09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1229

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 914 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 855

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 854 aagcctttaaagaagcctaagatcccttc 826
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>emb|BX829889.1|CNS0A1G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB43ZG10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1250

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 932 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 873

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 872 aagcctttaaagaagcctaagatcccttc 844
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>emb|BX829755.1|CNS0A18P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB34ZB06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1226

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 924 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 865

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 864 aagcctttaaagaagcctaagatcccttc 836
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>emb|BX832081.1|CNS0A16M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH50ZC01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1239

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 933 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 874

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 873 aagcctttaaagaagcctaagatcccttc 845
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>gb|AY089043.1| Arabidopsis thaliana clone 20865 mRNA, complete sequence
          Length = 1287

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
           ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 947 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 888

                                        
Query: 439 aatcctttgaagaagcctgggatcccttc 467
           || ||||| |||||||||  |||||||||
Sbjct: 887 aagcctttaaagaagcctaagatcccttc 859
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>gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM,
             complete sequence
          Length = 107931

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                         
Query: 379   ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
             ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 24030 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 24089

                                          
Query: 439   aatcctttgaagaagcctgggatcccttc 467
             || ||||| |||||||||  |||||||||
Sbjct: 24090 aagcctttaaagaagcctaagatcccttc 24118
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>gb|AC007123.1|AC007123 Arabidopsis thaliana BAC F21A20 from chromosome V near 61 cM, complete
              sequence
          Length = 133195

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                          
Query: 379    ttctcttttatcatcagcagtaatgcagagctcagaaccgnctttagtatctgagcatgt 438
              ||||| || ||||| || |||||||| ||||||||||| | |||||  |||||||| || 
Sbjct: 116384 ttctccttgatcattagtagtaatgctgagctcagaactgtctttaagatctgagcctgc 116443

                                           
Query: 439    aatcctttgaagaagcctgggatcccttc 467
              || ||||| |||||||||  |||||||||
Sbjct: 116444 aagcctttaaagaagcctaagatcccttc 116472
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>gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complete sequence
          Length = 189627

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 450   gaagcctgggatcccttccttg 471
             ||||||||||||||||||||||
Sbjct: 91290 gaagcctgggatcccttccttg 91311
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 141      gaaaaaacaaatgaatttattc 162
                ||||||||||||||||||||||
Sbjct: 29620827 gaaaaaacaaatgaatttattc 29620806



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 103      ttccattccaagtacatatc 122
                ||||||||||||||||||||
Sbjct: 20302134 ttccattccaagtacatatc 20302115
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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0627E10
          Length = 163388

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 141    gaaaaaacaaatgaatttattc 162
              ||||||||||||||||||||||
Sbjct: 147499 gaaaaaacaaatgaatttattc 147478
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>dbj|AP008223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
            fosmid clone:OSJNOa136M23
          Length = 26449

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 141  gaaaaaacaaatgaatttattc 162
            ||||||||||||||||||||||
Sbjct: 3233 gaaaaaacaaatgaatttattc 3212
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>gb|AC146045.3| Pan troglodytes BAC clone RP43-14B22 from 7, complete sequence
          Length = 151553

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    aaaacaaatgaatttattcag 164
              |||||||||||||||||||||
Sbjct: 120846 aaaacaaatgaatttattcag 120866
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>gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, complete sequence
          Length = 191528

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 107  attccaagtacatatcagatactca 131
            ||||||||||||||| |||||||||
Sbjct: 4469 attccaagtacatattagatactca 4445
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>gb|AC027547.8| Homo sapiens chromosome 15, clone RP11-18P13, complete sequence
          Length = 83003

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 107   attccaagtacatatcagatactca 131
             ||||||||||||||| |||||||||
Sbjct: 53986 attccaagtacatattagatactca 53962
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>gb|BC073206.1| Xenopus laevis MGC80481 protein, mRNA (cDNA clone MGC:80481
            IMAGE:5156566), complete cds
          Length = 2645

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   actaccagaccacaatcaca 60
            ||||||||||||||||||||
Sbjct: 2134 actaccagaccacaatcaca 2115
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>emb|CR626887.6| Zebrafish DNA sequence from clone DKEY-46I14 in linkage group 15,
             complete sequence
          Length = 198090

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   acaattatgcactcttgatt 312
             ||||||||||||||||||||
Sbjct: 65945 acaattatgcactcttgatt 65926
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>gb|AC098724.3| Mus musculus BAC clone RP23-3D14 from 4, complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 204   catgcttctgttcttttgtcattt 227
             ||||||||| ||||||||||||||
Sbjct: 32568 catgcttctattcttttgtcattt 32545
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>ref|XM_731488.1| Plasmodium chabaudi chabaudi hypothetical protein (PC401492.00.0)
           partial mRNA
          Length = 177

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 aaaaaacaaatgaatttatt 161
           ||||||||||||||||||||
Sbjct: 104 aaaaaacaaatgaatttatt 85
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>gb|AC116385.5| Mus musculus chromosome 5, clone RP23-17A11, complete sequence
          Length = 217711

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    atatcagatactcagagcta 137
              ||||||||||||||||||||
Sbjct: 133260 atatcagatactcagagcta 133279
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>emb|AL354828.12| Human DNA sequence from clone RP11-274P12 on chromosome 13 Contains a
             ferritin heavy polypeptide 1 (FTH1) pseudogene and a
             DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 39 (DDX39)
             (DDXL, MGC8471, MGC8203) pseudogene, complete sequence
          Length = 168114

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   tccaggtgaactttgaaatc 378
             ||||||||||||||||||||
Sbjct: 61258 tccaggtgaactttgaaatc 61277
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>emb|BX571838.9| Zebrafish DNA sequence from clone DKEY-205N7 in linkage group 13,
             complete sequence
          Length = 124398

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ttgtgttcttctgcatgctt 210
             ||||||||||||||||||||
Sbjct: 58679 ttgtgttcttctgcatgctt 58698
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>emb|BX537338.9| Zebrafish DNA sequence from clone DKEY-258E8 in linkage group 16,
              complete sequence
          Length = 309004

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    cagagctacacgaaaaaaca 149
              ||||||||||||||||||||
Sbjct: 144185 cagagctacacgaaaaaaca 144204
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>gb|AC087233.6| Mus Musculus Chromosome 17 RP23-476A24, complete sequence
          Length = 165330

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   cagcagtaatgcagagctca 412
             ||||||||||||||||||||
Sbjct: 31711 cagcagtaatgcagagctca 31692
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>gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, complete sequence
          Length = 204177

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tattcagaacattccatggc 177
              ||||||||||||||||||||
Sbjct: 154618 tattcagaacattccatggc 154637
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>gb|AC015502.7| Homo sapiens, clone RP11-21H13, complete sequence
          Length = 174520

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   tattcagaacattccatggc 177
             ||||||||||||||||||||
Sbjct: 62127 tattcagaacattccatggc 62146
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agctacacgaaaaaacaaat 152
             ||||||||||||||||||||
Sbjct: 76928 agctacacgaaaaaacaaat 76909
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>gb|AC010146.13| Homo sapiens BAC clone RP11-355I13 from 2, complete sequence
          Length = 211748

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cctattccatactgtatttc 105
             ||||||||||||||||||||
Sbjct: 59801 cctattccatactgtatttc 59782
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>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    aaaaaacaaatgaatttatt 161
              ||||||||||||||||||||
Sbjct: 469957 aaaaaacaaatgaatttatt 469938
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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tcagatactcagagctacac 140
             ||||||||||||||||||||
Sbjct: 99682 tcagatactcagagctacac 99663
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>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0052O11
          Length = 106467

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ttccattccaagtacatatc 122
             ||||||||||||||||||||
Sbjct: 44745 ttccattccaagtacatatc 44726
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>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0678G09
          Length = 139220

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ttccattccaagtacatatc 122
             ||||||||||||||||||||
Sbjct: 11034 ttccattccaagtacatatc 11015
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agctacacgaaaaaacaaat 152
             ||||||||||||||||||||
Sbjct: 76928 agctacacgaaaaaacaaat 76909
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>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16,
              complete sequence
          Length = 208738

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aaaacaaatgaatttattca 163
              ||||||||||||||||||||
Sbjct: 196804 aaaacaaatgaatttattca 196823
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>emb|AL935335.5| Zebrafish DNA sequence from clone CH211-244M22, complete sequence
          Length = 197549

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   acaattatgcactcttgatt 312
             ||||||||||||||||||||
Sbjct: 44789 acaattatgcactcttgatt 44770
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>gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosome 17, complete
             sequence
          Length = 157621

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   cagcagtaatgcagagctca 412
             ||||||||||||||||||||
Sbjct: 94744 cagcagtaatgcagagctca 94725
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>emb|AL606915.12| Mouse DNA sequence from clone RP23-185C16 on chromosome 4, complete
              sequence
          Length = 182248

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 204    catgcttctgttcttttgtcattt 227
              ||||||||| ||||||||||||||
Sbjct: 147912 catgcttctattcttttgtcattt 147889


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,861,961
Number of Sequences: 3902068
Number of extensions: 4861961
Number of successful extensions: 93951
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93757
Number of HSP's gapped (non-prelim): 194
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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