ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1NUSG_THET8 (P35872) Transcription antitermination protein nusG 60 6e-09
2NUSG_AQUAE (O67757) Transcription antitermination protein nusG 55 2e-07
3NUSG_TREPA (O83264) Transcription antitermination protein nusG 50 5e-06
4NUSG_DEIRA (Q9RSS6) Transcription antitermination protein nusG 50 8e-06
5NUSG_PSEAE (Q9HWC4) Transcription antitermination protein nusG 49 2e-05
6NUSG_BACSU (Q06795) Transcription antitermination protein nusG 49 2e-05
7NUSG_VIBCH (Q9KV35) Transcription antitermination protein nusG 48 3e-05
8NUSG_BUCBP (Q89B15) Transcription antitermination protein nusG 48 3e-05
9NUSG_VIBPA (Q87KP9) Transcription antitermination protein nusG 47 4e-05
10NUSG_SYNY3 (P36265) Transcription antitermination protein nusG 47 5e-05
11NUSG_YERPE (Q8ZAP0) Transcription antitermination protein nusG 47 5e-05
12NUSG_SHIFL (P0AFG2) Transcription antitermination protein nusG 47 5e-05
13NUSG_SALTY (P0AA02) Transcription antitermination protein nusG 47 5e-05
14NUSG_SALTI (P0AA03) Transcription antitermination protein nusG 47 5e-05
15NUSG_ECOLI (P0AFG0) Transcription antitermination protein nusG 47 5e-05
16NUSG_ECOL6 (P0AA01) Transcription antitermination protein nusG 47 5e-05
17NUSG_ECO57 (P0AFG1) Transcription antitermination protein nusG 47 5e-05
18NUSG_STAAW (P0A097) Transcription antitermination protein nusG 47 5e-05
19NUSG_STAAU (P0A098) Transcription antitermination protein nusG 47 5e-05
20NUSG_STAAS (Q6GBV1) Transcription antitermination protein nusG 47 5e-05
21NUSG_STAAR (Q6GJD2) Transcription antitermination protein nusG 47 5e-05
22NUSG_STAAN (P0A096) Transcription antitermination protein nusG 47 5e-05
23NUSG_STAAM (P0A095) Transcription antitermination protein nusG 47 5e-05
24NUSG_STAAC (Q5HID9) Transcription antitermination protein nusG 47 5e-05
25NUSG_NEIMB (P65592) Transcription antitermination protein nusG 47 5e-05
26NUSG_NEIMA (P65591) Transcription antitermination protein nusG 47 5e-05
27NUSG_VIBVU (Q8DD25) Transcription antitermination protein nusG 46 9e-05
28NUSG_BUCAI (P57151) Transcription antitermination protein nusG 46 9e-05
29NUSG_STACA (P36264) Transcription antitermination protein nusG 46 9e-05
30NUSG_BUCAP (Q8KA65) Transcription antitermination protein nusG 46 1e-04
31NUSG_BACHD (Q9KGE7) Transcription antitermination protein nusG 46 1e-04
32NUSG_STAES (Q8CQ85) Transcription antitermination protein nusG 46 1e-04
33NUSG_STAEQ (Q5HRL6) Transcription antitermination protein nusG 46 1e-04
34NUSG_PASMU (Q9CK84) Transcription antitermination protein nusG 44 4e-04
35NUSG_XYLFT (Q87A27) Transcription antitermination protein nusG 43 8e-04
36NUSG_HAEIN (P43916) Transcription antitermination protein nusG 43 8e-04
37NUSG_HELPJ (Q9ZK20) Transcription antitermination protein nusG 42 0.001
38NUSG_STRGR (P36260) Transcription antitermination protein nusG 42 0.002
39NUSG_STRCO (P36266) Transcription antitermination protein nusG 42 0.002
40NUSG_MYCLE (Q9CBK0) Transcription antitermination protein nusG 42 0.002
41NUSG_THEMA (P29397) Transcription antitermination protein nusG 42 0.002
42NUSG_XYLFA (Q9PA81) Transcription antitermination protein nusG 42 0.002
43NUSG_MYCTU (P65589) Transcription antitermination protein nusG 41 0.003
44NUSG_MYCBO (P65590) Transcription antitermination protein nusG 41 0.003
45NUSG_STRVG (P27309) Transcription antitermination protein nusG (... 41 0.003
46NUSG_HELPY (P55976) Transcription antitermination protein nusG 41 0.003
47NUSG_LIBAS (P36262) Transcription antitermination protein nusG (... 41 0.004
48NUSG_RICCN (Q92J91) Transcription antitermination protein nusG 39 0.011
49NUSG_BORBU (O51355) Transcription antitermination protein nusG 39 0.015
50NUSG_RICPR (P50056) Transcription antitermination protein nusG 39 0.015
51NUSG_STRGB (P52852) Transcription antitermination protein nusG 37 0.043
52NUSG_CHLTR (O84322) Transcription antitermination protein nusG 37 0.073
53NUSG_CHLMU (Q9PK75) Transcription antitermination protein nusG 37 0.073
54NUSG_LACLA (Q9CDV7) Transcription antitermination protein nusG 36 0.12
55NUSG_CAMJE (Q9PI36) Transcription antitermination protein nusG 35 0.21
56RL24_ARCFU (O28365) 50S ribosomal protein L24P 32 2.4
57HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.... 31 3.1
58VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1) 30 9.0
59ALBD2_BACSU (Q8RKH4) Antilisterial bacteriocin subtilosin biosyn... 30 9.0
60ALBD1_BACSU (P71008) Antilisterial bacteriocin subtilosin biosyn... 30 9.0 
>NUSG_THET8 (P35872) Transcription antitermination protein nusG|
          Length = 184

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = -1

Query: 608 KKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQI 429
           K+ P A    R G  V V+SGPFA FTG++ E+  +  KV V +T+FG+E+ V+LDF Q+
Sbjct: 122 KEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQV 181
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>NUSG_AQUAE (O67757) Transcription antitermination protein nusG|
          Length = 248

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = -1

Query: 602 VPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEA 423
           V P+      G  V V+ GPF  FTG++ EV  + +K+TV +++FG+ + V+LDFDQ+E 
Sbjct: 188 VKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK 247

Query: 422 L 420
           +
Sbjct: 248 I 248
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>NUSG_TREPA (O83264) Transcription antitermination protein nusG|
          Length = 185

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)
 Frame = -1

Query: 620 EINFKKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLD 441
           EI   + P        G  V ++ GPFA F+G + EV+ +  KV V +T+FG+ + V+L+
Sbjct: 119 EIKGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELE 178

Query: 440 FDQIEAL 420
             Q+EAL
Sbjct: 179 LVQVEAL 185
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>NUSG_DEIRA (Q9RSS6) Transcription antitermination protein nusG|
          Length = 190

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%)
 Frame = -1

Query: 608 KKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQI 429
           ++ P     L++G  V V SGPFA F+G + EV     KV V +++FG+E+ V+LDF Q+
Sbjct: 129 EEAPRIKVDLKAGDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETPVELDFSQV 188
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>NUSG_PSEAE (Q9HWC4) Transcription antitermination protein nusG|
          Length = 177

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G +V V+ GPFA F G + EV  +  ++ V + +FG+ + V+L+F Q+E
Sbjct: 118 PKPKTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVE 175
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>NUSG_BACSU (Q06795) Transcription antitermination protein nusG|
          Length = 177

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = -1

Query: 566 SVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           +V V+ GPFA FTGS+ E+     KV V + +FG+E+ V+L+F QI+ L
Sbjct: 129 TVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
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>NUSG_VIBCH (Q9KV35) Transcription antitermination protein nusG|
          Length = 181

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = -1

Query: 605 KVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           + P   T+  +G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E
Sbjct: 119 EAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVE 178

Query: 425 ALN 417
            L+
Sbjct: 179 KLD 181
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>NUSG_BUCBP (Q89B15) Transcription antitermination protein nusG|
          Length = 181

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = -1

Query: 638 DQETGQEIN-FKKV---PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTL 471
           DQE    IN  K+V   P   TL   G +V V  GPF+ F G + EV  +  ++ V +++
Sbjct: 105 DQEVNTIINKLKQVGDKPRPKTLFEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSI 164

Query: 470 FGKESFVDLDFDQIE 426
           FG+ + V+LDF Q++
Sbjct: 165 FGRSTPVELDFSQVK 179
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>NUSG_VIBPA (Q87KP9) Transcription antitermination protein nusG|
          Length = 181

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = -1

Query: 605 KVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           + P   T+  +G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E
Sbjct: 119 EAPRPRTMYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVE 178

Query: 425 ALN 417
            L+
Sbjct: 179 KLD 181
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>NUSG_SYNY3 (P36265) Transcription antitermination protein nusG|
          Length = 205

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 417
           G  + VLSGPF  F G ++EV  +  K+   +++FG+E+ V+L+F Q+E  N
Sbjct: 154 GDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQVEKQN 205
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>NUSG_YERPE (Q8ZAP0) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SHIFL (P0AFG2) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SALTY (P0AA02) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SALTI (P0AA03) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECOLI (P0AFG0) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECOL6 (P0AA01) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECO57 (P0AFG1) Transcription antitermination protein nusG|
          Length = 180

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 121 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_STAAW (P0A097) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAU (P0A098) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAS (Q6GBV1) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAR (Q6GJD2) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAN (P0A096) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAM (P0A095) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAC (Q5HID9) Transcription antitermination protein nusG|
          Length = 182

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 581 LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           L  G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 129 LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_NEIMB (P65592) Transcription antitermination protein nusG|
          Length = 178

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 417
           G  V V  GPFA F G + EV  +  K+ V + +FG+E+ V+L+F Q+E +N
Sbjct: 127 GQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKIN 178
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>NUSG_NEIMA (P65591) Transcription antitermination protein nusG|
          Length = 178

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 417
           G  V V  GPFA F G + EV  +  K+ V + +FG+E+ V+L+F Q+E +N
Sbjct: 127 GQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKIN 178
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>NUSG_VIBVU (Q8DD25) Transcription antitermination protein nusG|
          Length = 181

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 22/63 (34%), Positives = 38/63 (60%)
 Frame = -1

Query: 605 KVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           + P   T+   G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E
Sbjct: 119 EAPRPRTMYEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVE 178

Query: 425 ALN 417
            L+
Sbjct: 179 KLD 181
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>NUSG_BUCAI (P57151) Transcription antitermination protein nusG|
          Length = 181

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  + V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 122 PRPKTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVE 179
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>NUSG_STACA (P36264) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 22/51 (43%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 132 GEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_BUCAP (Q8KA65) Transcription antitermination protein nusG|
          Length = 181

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P   TL   G  + V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 122 PRPKTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVE 179
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>NUSG_BACHD (Q9KGE7) Transcription antitermination protein nusG|
          Length = 178

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = -1

Query: 566 SVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           SV V  GPFA F G++ E+    +K+ V + +FG+E+ V+L+F QIE +
Sbjct: 130 SVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178
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>NUSG_STAES (Q8CQ85) Transcription antitermination protein nusG|
          Length = 182

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 132 GEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAEQ (Q5HRL6) Transcription antitermination protein nusG|
          Length = 182

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 132 GEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_PASMU (Q9CK84) Transcription antitermination protein nusG|
          Length = 183

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 33/52 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 417
           G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E  N
Sbjct: 132 GEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEKTN 183
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>NUSG_XYLFT (Q87A27) Transcription antitermination protein nusG|
          Length = 185

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P    L   G  V V+ GPF  F G + EV  +  ++ V + +FG+ + VDLDF Q++
Sbjct: 126 PRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQVQ 183
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>NUSG_HAEIN (P43916) Transcription antitermination protein nusG|
          Length = 185

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 19/52 (36%), Positives = 34/52 (65%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 417
           G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E ++
Sbjct: 134 GEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKIH 185
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>NUSG_HELPJ (Q9ZK20) Transcription antitermination protein nusG|
          Length = 176

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/68 (25%), Positives = 40/68 (58%)
 Frame = -1

Query: 623 QEINFKKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDL 444
           +++N +  P        G  V V+ GPFA FT ++ E   +++K+ + +++FG+ + +++
Sbjct: 108 EKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEI 167

Query: 443 DFDQIEAL 420
            + Q+E +
Sbjct: 168 LYSQVEKI 175
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>NUSG_STRGR (P36260) Transcription antitermination protein nusG|
          Length = 294

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -1

Query: 626 GQEINFKKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVD 447
           G+    +KV         G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+
Sbjct: 226 GKPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 285

Query: 446 LDFDQIE 426
           L FDQI+
Sbjct: 286 LSFDQIQ 292
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>NUSG_STRCO (P36266) Transcription antitermination protein nusG|
          Length = 300

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+L FDQI+
Sbjct: 250 GDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVELSFDQIQ 298
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>NUSG_MYCLE (Q9CBK0) Transcription antitermination protein nusG|
          Length = 228

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/51 (37%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 178 GESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFSQVSKI 228
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>NUSG_THEMA (P29397) Transcription antitermination protein nusG|
          Length = 353

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -1

Query: 623 QEINFKKVPPATTL-LRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVD 447
           +E   KK P    L  + G  V ++SGPF  F G + E+  + +++ V +T+FG+E+ V 
Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343

Query: 446 LDFDQIEAL 420
           L   ++E +
Sbjct: 344 LHVSEVEKI 352
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>NUSG_XYLFA (Q9PA81) Transcription antitermination protein nusG|
          Length = 185

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           P    L   G  V V+ GPF  F G + EV  +  ++ V + +FG+ + VDL+F Q++
Sbjct: 126 PRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQVQ 183
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>NUSG_MYCTU (P65589) Transcription antitermination protein nusG|
          Length = 238

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/51 (37%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 188 GESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238
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>NUSG_MYCBO (P65590) Transcription antitermination protein nusG|
          Length = 238

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/51 (37%), Positives = 33/51 (64%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 188 GESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238
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>NUSG_STRVG (P27309) Transcription antitermination protein nusG (Butanolide|
           receptor)
          Length = 299

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+L FDQI+
Sbjct: 249 GDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQIQ 297
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>NUSG_HELPY (P55976) Transcription antitermination protein nusG|
          Length = 176

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 17/68 (25%), Positives = 39/68 (57%)
 Frame = -1

Query: 623 QEINFKKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDL 444
           +++N +  P        G  V V+ GPFA FT ++ E   +++K+ + +++FG+ + +++
Sbjct: 108 EKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEI 167

Query: 443 DFDQIEAL 420
              Q+E +
Sbjct: 168 LHSQVEKI 175
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>NUSG_LIBAS (P36262) Transcription antitermination protein nusG (Fragment)|
          Length = 70

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = -1

Query: 599 PPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           P ++     G  V V  GPFA F G +  V  +  +V V++ +FG+ + V+L ++Q+E +
Sbjct: 10  PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 69
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>NUSG_RICCN (Q92J91) Transcription antitermination protein nusG|
          Length = 192

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/53 (32%), Positives = 33/53 (62%)
 Frame = -1

Query: 584 LLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           L   G  V V  GPF  F G++ E+ ++  ++ V + +FGK + ++L+F+Q++
Sbjct: 137 LYEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVK 189
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>NUSG_BORBU (O51355) Transcription antitermination protein nusG|
          Length = 184

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 420
           G  V +  GPF  F G +  +  + KK+ V + +FG+ + V++DF  IE +
Sbjct: 134 GERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIEKI 184
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>NUSG_RICPR (P50056) Transcription antitermination protein nusG|
          Length = 192

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = -1

Query: 605 KVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           KV   + L   G  V V  GPF  F G++  + +   ++ V +++FGK + ++L+F+Q++
Sbjct: 130 KVAKNSKLYEVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVK 189
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>NUSG_STRGB (P52852) Transcription antitermination protein nusG|
          Length = 309

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           GASV V  GPFA    ++ E+   +KKV   + +FG E+ V+L FDQI+
Sbjct: 260 GASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSFDQIQ 307
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>NUSG_CHLTR (O84322) Transcription antitermination protein nusG|
          Length = 182

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFV-DLDFDQIE 426
           G+ V +  G F  F G + EV     +++V +++FG+E+ V DL+F Q+E
Sbjct: 124 GSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVE 173
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>NUSG_CHLMU (Q9PK75) Transcription antitermination protein nusG|
          Length = 182

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFV-DLDFDQIE 426
           G+ V +  G F  F G + EV     +++V +++FG+E+ V DL+F Q+E
Sbjct: 124 GSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVE 173
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>NUSG_LACLA (Q9CDV7) Transcription antitermination protein nusG|
          Length = 185

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -1

Query: 572 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 426
           G  V ++ G F+GF   + E+     K+T+ + +FG+ + V+LD  QIE
Sbjct: 135 GKRVRIVDGAFSGFEAPITEI--NGDKLTLTVDMFGRATPVELDMHQIE 181
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>NUSG_CAMJE (Q9PI36) Transcription antitermination protein nusG|
          Length = 177

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = -1

Query: 623 QEINFKKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDL 444
           ++++ +  P        G +V +  GPFA FT  + E       + + +++FG+ + V++
Sbjct: 109 EKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEI 168

Query: 443 DFDQIEAL 420
            + Q+E +
Sbjct: 169 LYSQVEKI 176
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>RL24_ARCFU (O28365) 50S ribosomal protein L24P|
          Length = 120

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 608 KKVPPATTLLRSGASVHVLSGPFAGFTGSLLEVIRKNKKVTV 483
           KK       +R G  V ++ G FAG  G +LEV  K  ++TV
Sbjct: 39  KKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITV 80
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>HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 368

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 160 PSRRFPVEPILVRKNQRFQTLARGLMFTVAHRLTILLCLSPN 285
           P+R    EP+ +R+NQ F      ++  V+ R  I+   SPN
Sbjct: 132 PARACGAEPVFIRRNQDFSLNPEKILEAVSPRTKIIFLCSPN 173
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>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +3

Query: 147 ETLATKSAISC*TNPGPQKP-AFPNTCQGLNVYCGS---QANYSVVFVTQSGGLQQIHIP 314
           +T+++ +A S   +P  Q P A  +T    ++Y  S     N  +   +QSG    I +P
Sbjct: 110 QTVSSTAAGSAIVSPMMQSPKALQSTLSSTSMYLDSFQRSPNNILGIPSQSGS---IPLP 166

Query: 315 QVLYSYLQGPTDKTSESISTNKTTDTVRLCLALSI 419
           Q   S  Q  + K   ++ TN + D  +LC  +S+
Sbjct: 167 QSRQSQQQSQSQKNDPNMGTNFSQDINQLCSWISM 201
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>ALBD2_BACSU (Q8RKH4) Antilisterial bacteriocin subtilosin biosynthesis protein|
           albD
          Length = 436

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 601 CLQQRHFYARVPVFMFSPGLLQASLALFW 515
           CL++  F+  +P+F+F  G L  +  LFW
Sbjct: 108 CLRRTLFFFILPLFLFGNGTLSGAQTLFW 136
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>ALBD1_BACSU (P71008) Antilisterial bacteriocin subtilosin biosynthesis protein|
           albD
          Length = 436

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 601 CLQQRHFYARVPVFMFSPGLLQASLALFW 515
           CL++  F+  +P+F+F  G L  +  LFW
Sbjct: 108 CLRRTLFFFILPLFLFGNGTLSGAQTLFW 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,860,889
Number of Sequences: 219361
Number of extensions: 1890626
Number of successful extensions: 4108
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 4008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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