ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22b10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctgc 663 ||||||||||||||||||||||| |||||||| | |||||||| Sbjct: 103092 ctaccgttatccctttcacggtatctctccctagaccggctgc 103050
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctgc 663 ||||||||||||||||||||||| |||||||| | |||||||| Sbjct: 7897395 ctaccgttatccctttcacggtatctctccctagaccggctgc 7897353
>ref|XM_474910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 9603 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctg 662 ||||||||||||||||||||||| |||||||| | ||||||| Sbjct: 9248 ctaccgttatccctttcacggtatctctccctagaccggctg 9207
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctgc 663 ||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 130596 ctaccgtcatccctttcacggtatctctccctagaccggctgc 130638
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctgc 663 ||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 22675927 ctaccgtcatccctttcacggtatctctccctagaccggctgc 22675969
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 621 ctaccgttatccctttcacggtacctctccctcgcccggctgc 663 ||||||| ||||||||||||||| |||||||| | |||||||| Sbjct: 22688395 ctaccgtcatccctttcacggtatctctccctagaccggctgc 22688437
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 tgaagtactagtagtacatgat 194 |||||||||||||||||||||| Sbjct: 36947 tgaagtactagtagtacatgat 36968
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 tgaagtactagtagtacatgat 194 |||||||||||||||||||||| Sbjct: 25302343 tgaagtactagtagtacatgat 25302364
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 ctcgagcccgaccccggcccg 418 ||||||||||||||||||||| Sbjct: 1579921 ctcgagcccgaccccggcccg 1579901
>gb|AC123048.4| Mus musculus BAC clone RP24-394D5 from chromosome 18, complete sequence Length = 148673 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 266 ccaaaaaggactactgagtagaaga 290 |||||||||||| |||||||||||| Sbjct: 94176 ccaaaaaggacttctgagtagaaga 94200
>gb|AC102622.7| Mus musculus chromosome 3, clone RP23-434O10, complete sequence Length = 237899 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 tgtgttgctgtcacctgcagc 92 ||||||||||||||||||||| Sbjct: 164475 tgtgttgctgtcacctgcagc 164495
>emb|AL683824.8| Mouse DNA sequence from clone RP23-90O18 on chromosome 3, complete sequence Length = 233589 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 tgtgttgctgtcacctgcagc 92 ||||||||||||||||||||| Sbjct: 114962 tgtgttgctgtcacctgcagc 114942
>gb|AY753212.1| Saccharum officinarum D-type cyclin (CycD2.1) mRNA, complete cds Length = 1795 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 596 gcggcttccctcctgctgtgcgcc 619 ||||||||| |||||||||||||| Sbjct: 209 gcggcttccatcctgctgtgcgcc 232
>ref|NM_001012804.1| Gallus gallus protein kinase C, alpha (PRKCA), mRNA Length = 4592 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gatctctctgttttccagtt 131 |||||||||||||||||||| Sbjct: 1903 gatctctctgttttccagtt 1884
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tgttttccagttatataaac 139 |||||||||||||||||||| Sbjct: 234051 tgttttccagttatataaac 234070
>gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete sequence Length = 105222 Score = 40.1 bits (20), Expect = 9.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 310 ctcccatttaccttcccgtctaccgtctcgctctct 345 |||||| |||||||||||||| || ||||| ||||| Sbjct: 64203 ctcccacttaccttcccgtcttccatctcgttctct 64168
>gb|AY292384.1| Deformed wing virus isolate PA, complete genome Length = 10166 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tctgttttccagttatataa 137 |||||||||||||||||||| Sbjct: 6654 tctgttttccagttatataa 6635
>gb|AY224602.1| Deformed wing virus polyprotein mRNA, partial cds Length = 4700 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tctgttttccagttatataa 137 |||||||||||||||||||| Sbjct: 1572 tctgttttccagttatataa 1553
>ref|XM_757417.1| Ustilago maydis 521 hypothetical protein (UM06363.1) partial mRNA Length = 2973 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 ggaaacgacgatggccttga 549 |||||||||||||||||||| Sbjct: 1787 ggaaacgacgatggccttga 1768
>gb|AC132437.3| Mus musculus BAC clone RP23-230M17 from chromosome 5, complete sequence Length = 176825 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gtcacctgcagccaaggtgc 100 |||||||||||||||||||| Sbjct: 133978 gtcacctgcagccaaggtgc 133997
>ref|XM_774098.1| Giardia lamblia ATCC 50803 exodeoxyribonuclease III (GLP_137_24759_23791) partial mRNA Length = 969 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 tcgaactccgggtctcccat 438 |||||||||||||||||||| Sbjct: 428 tcgaactccgggtctcccat 409
>emb|AL139409.9| Human DNA sequence from clone RP11-120D12 on chromosome 1q21.2-22 Contains the 5' end of the gene for Fc receptor-like protein 1 (FCRH1), the CD5L gene for CD5 antigen-like (scavenger receptor cysteine rich family) and a mitochondrial ribosomal protein S21 (MRPS21) pseudogene, complete sequence Length = 63633 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcagtatcattccttccccc 49 |||||||||||||||||||| Sbjct: 46749 gcagtatcattccttccccc 46768
>emb|AJ851529.1| Gallus gallus mRNA for hypothetical protein, clone 5a10 Length = 4592 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gatctctctgttttccagtt 131 |||||||||||||||||||| Sbjct: 1903 gatctctctgttttccagtt 1884
>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence Length = 220137 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gtcacctgcagccaaggtgc 100 |||||||||||||||||||| Sbjct: 39535 gtcacctgcagccaaggtgc 39554
>gb|AC010649.8| Homo sapiens chromosome 19 clone LLNLR-304C3, complete sequence Length = 37492 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catttatggagcatgaagtg 21 |||||||||||||||||||| Sbjct: 33690 catttatggagcatgaagtg 33671
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gatctctctgttttccagtt 131 |||||||||||||||||||| Sbjct: 274854 gatctctctgttttccagtt 274873
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cttcattgcttccgctccca 315 |||||||||||||||||||| Sbjct: 12168389 cttcattgcttccgctccca 12168370
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 agccgccatcgctgccacgg 508 |||||||||||||||||||| Sbjct: 23398025 agccgccatcgctgccacgg 23398044
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cttcattgcttccgctccca 315 |||||||||||||||||||| Sbjct: 2250509 cttcattgcttccgctccca 2250528
>gb|AC133183.3| Mus musculus BAC clone RP24-185O19 from chromosome 12, complete sequence Length = 182948 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 atgtaacactaacactgcagcttt 173 |||||| ||||||||||||||||| Sbjct: 59317 atgtaaaactaacactgcagcttt 59340
>gb|AC087625.12| Homo sapiens chromosome 8, clone RP11-525O22, complete sequence Length = 166763 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcagtatcattccttccccc 49 |||||||||||||||||||| Sbjct: 39188 gcagtatcattccttccccc 39207
>gb|AC087273.5| Homo sapiens chromosome 8, clone RP11-156K13, complete sequence Length = 160835 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gcagtatcattccttccccc 49 |||||||||||||||||||| Sbjct: 23268 gcagtatcattccttccccc 23249
>dbj|AP003612.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0457B11 Length = 144015 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 agccgccatcgctgccacgg 508 |||||||||||||||||||| Sbjct: 116998 agccgccatcgctgccacgg 117017
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 agccgccatcgctgccacgg 508 |||||||||||||||||||| Sbjct: 57580 agccgccatcgctgccacgg 57599
>emb|BX005182.13| Zebrafish DNA sequence from clone CH211-279M23 in linkage group 23, complete sequence Length = 155920 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 aacactgcagctttgaagtactagtagt 187 |||||||||||||| |||||| |||||| Sbjct: 123859 aacactgcagctttaaagtaccagtagt 123832
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cttcattgcttccgctccca 315 |||||||||||||||||||| Sbjct: 37458 cttcattgcttccgctccca 37477
>dbj|AB070959.1| Kakugo virus genomic RNA, complete genome Length = 10152 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tctgttttccagttatataa 137 |||||||||||||||||||| Sbjct: 6671 tctgttttccagttatataa 6652
>ref|XM_556645.1| Anopheles gambiae str. PEST ENSANGP00000027257 (ENSANGG00000021870), partial mRNA Length = 426 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 cctcgtagccgccatcgctgccac 506 ||||||||||||| |||||||||| Sbjct: 187 cctcgtagccgccctcgctgccac 164
>ref|XM_556644.1| Anopheles gambiae str. PEST ENSANGP00000025695 (ENSANGG00000024548), partial mRNA Length = 507 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 cctcgtagccgccatcgctgccac 506 ||||||||||||| |||||||||| Sbjct: 178 cctcgtagccgccctcgctgccac 155
>ref|XM_316012.2| Anopheles gambiae str. PEST ENSANGP00000022438 (ENSANGG00000020531), partial mRNA Length = 522 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 cctcgtagccgccatcgctgccac 506 ||||||||||||| |||||||||| Sbjct: 193 cctcgtagccgccctcgctgccac 170
>emb|AJ489744.2|DWI489744 Deformed Wing Virus gene for polyprotein, genomic RNA Length = 10140 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tctgttttccagttatataa 137 |||||||||||||||||||| Sbjct: 6659 tctgttttccagttatataa 6640
>emb|AL929209.17| Mouse DNA sequence from clone RP23-415C3 on chromosome 2, complete sequence Length = 210790 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 626 gttatccctttcacggtacctctccctc 653 ||||||||||||||||| ||||||||| Sbjct: 57331 gttatccctttcacggtttctctccctc 57358
>dbj|AP006303.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-285B2, complete sequence Length = 167054 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcagtatcattccttccccc 49 |||||||||||||||||||| Sbjct: 83580 gcagtatcattccttccccc 83599
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 650 cctcgcccggctgctggggg 669 |||||||||||||||||||| Sbjct: 370824 cctcgcccggctgctggggg 370843
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cttcattgcttccgctccca 315 |||||||||||||||||||| Sbjct: 12122759 cttcattgcttccgctccca 12122740
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cttcattgcttccgctccca 315 |||||||||||||||||||| Sbjct: 128928 cttcattgcttccgctccca 128947
>gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromosome unknown, complete sequence Length = 231813 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gatctctctgttttccagtt 131 |||||||||||||||||||| Sbjct: 75346 gatctctctgttttccagtt 75365
>dbj|AB020866.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 9/11 Length = 100000 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcagtatcattccttccccc 49 |||||||||||||||||||| Sbjct: 61931 gcagtatcattccttccccc 61950
>dbj|AP003484.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-734C14, complete sequence Length = 206750 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 acatttatggagcatgaagtgata 24 ||||||||||||||||| |||||| Sbjct: 147867 acatttatggagcatgatgtgata 147890 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,602,551 Number of Sequences: 3902068 Number of extensions: 4602551 Number of successful extensions: 85555 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85186 Number of HSP's gapped (non-prelim): 369 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
