ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21m08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
3dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
7emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial se... 113 6e-22
8gb|AY107397.1| Zea mays PCO076624 mRNA sequence 80 9e-12
9gb|BT016644.1| Zea mays clone Contig477 mRNA sequence 72 2e-09
10gb|BT016818.1| Zea mays clone Contig651 mRNA sequence 72 2e-09
11gb|BT016902.1| Zea mays clone Contig735 mRNA sequence 66 1e-07
12gb|AY105862.1| Zea mays PCO076623 mRNA sequence 66 1e-07
13gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome 46 0.12
14ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 7.3
15ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 7.3
16emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 7.3
17gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosom... 40 7.3
18gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 40 7.3
19gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein... 40 7.3
20emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chr... 40 7.3
21gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, pu... 40 7.3
22dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-1977... 40 7.3
23gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15... 40 7.3

>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 92    gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 151
             |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 87657 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 87598

                              
Query: 152   ccaggtgctttgtcctc 168
             |||||||| ||||||||
Sbjct: 87597 ccaggtgccttgtcctc 87581



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 233   taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 292
             ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 87351 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 87292

                              
Query: 293   ttatcaaattgctccaa 309
             || ||||||||||||||
Sbjct: 87291 ttgtcaaattgctccaa 87275



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 381   catttccgacatagataaaaccatcctcgccattntccaataaata 426
             ||||||| ||||| || | ||||||||| ||||| |||||||||||
Sbjct: 87050 catttcctacataaattagaccatcctcaccattttccaataaata 87005



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 92       gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 151
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16347222 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16347163

                                 
Query: 152      ccaggtgctttgtcctc 168
                |||||||| ||||||||
Sbjct: 16347162 ccaggtgccttgtcctc 16347146



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 233      taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 292
                ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 16346916 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16346857

                                 
Query: 293      ttatcaaattgctccaa 309
                || ||||||||||||||
Sbjct: 16346856 ttgtcaaattgctccaa 16346840



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 381      catttccgacatagataaaaccatcctcgccattntccaataaata 426
                ||||||| ||||| || | ||||||||| ||||| |||||||||||
Sbjct: 16346615 catttcctacataaattagaccatcctcaccattttccaataaata 16346570



to top

>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full
            insert sequence
          Length = 2175

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                        
Query: 92   gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 151
            |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1731 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 1672

                             
Query: 152  ccaggtgctttgtcctc 168
            |||||||| ||||||||
Sbjct: 1671 ccaggtgccttgtcctc 1655



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 233  taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 292
            ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 1590 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 1531

                             
Query: 293  ttatcaaattgctccaa 309
            || ||||||||||||||
Sbjct: 1530 ttgtcaaattgctccaa 1514



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 92       gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 151
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16437201 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16437142

                                 
Query: 152      ccaggtgctttgtcctc 168
                |||||||| ||||||||
Sbjct: 16437141 ccaggtgccttgtcctc 16437125



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 233      taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 292
                ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 16436895 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16436836

                                 
Query: 293      ttatcaaattgctccaa 309
                || ||||||||||||||
Sbjct: 16436835 ttgtcaaattgctccaa 16436819



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 381      catttccgacatagataaaaccatcctcgccattntccaataaata 426
                ||||||| ||||| || | ||||||||| ||||| |||||||||||
Sbjct: 16436594 catttcctacataaattagaccatcctcaccattttccaataaata 16436549



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 6e-22
 Identities = 144/176 (81%)
 Strand = Plus / Plus

                                                                            
Query: 318      gatttggtgcaccagccaaggatgagagaccaaatatttgctccagggnggccgggttca 377
                |||||||| | |||||||| ||||| | ||||||||||||||| |||| ||| ||||| |
Sbjct: 13860971 gatttggtactccagccaaagatgaaacaccaaatatttgctcaagggtggcagggttta 13861030

                                                                            
Query: 378      ccgcatttccgacatagataaaaccatcctcgccattntccaataaataaatcccatcat 437
                | |||||||||||||| | |||||||||||| ||||| ||||| |||||||| |||  ||
Sbjct: 13861031 ctgcatttccgacataaacaaaaccatcctcaccattttccaacaaataaattccaaaat 13861090

                                                                        
Query: 438      cctgnatatnctcactatngagagnaaggggatnnggaataagggaancctcatca 493
                |  |  ||| |||||||| ||| | |||||| |  || ||||||||| | ||||||
Sbjct: 13861091 caagcgtattctcactattgagtgtaagggggtttggtataagggaatcatcatca 13861146



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 88       tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13860418 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13860477

                                           
Query: 148      gccaccaggtgctttgtcctccaccaa 174
                |||||||||||| ||||| || |||||
Sbjct: 13860478 gccaccaggtgccttgtcttcgaccaa 13860504



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                            
Query: 236      gagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgcatta 295
                ||||||||||||||||||||||||||||| |||||||| ||||||||||| | | | |||
Sbjct: 13860731 gagcatctctgtcgccttatttcattcaccacttcatttactttcctggaaagttcgtta 13860790

                                     
Query: 296      tcaaattgctccaatgccaac 316
                ||| ||||||||||| |||||
Sbjct: 13860791 tcatattgctccaataccaac 13860811



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 6e-22
 Identities = 144/176 (81%)
 Strand = Plus / Plus

                                                                            
Query: 318      gatttggtgcaccagccaaggatgagagaccaaatatttgctccagggnggccgggttca 377
                |||||||| | |||||||| ||||| | ||||||||||||||| |||| ||| ||||| |
Sbjct: 13815251 gatttggtactccagccaaagatgaaacaccaaatatttgctcaagggtggcagggttta 13815310

                                                                            
Query: 378      ccgcatttccgacatagataaaaccatcctcgccattntccaataaataaatcccatcat 437
                | |||||||||||||| | |||||||||||| ||||| ||||| |||||||| |||  ||
Sbjct: 13815311 ctgcatttccgacataaacaaaaccatcctcaccattttccaacaaataaattccaaaat 13815370

                                                                        
Query: 438      cctgnatatnctcactatngagagnaaggggatnnggaataagggaancctcatca 493
                |  |  ||| |||||||| ||| | |||||| |  || ||||||||| | ||||||
Sbjct: 13815371 caagcgtattctcactattgagtgtaagggggtttggtataagggaatcatcatca 13815426



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 88       tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13814698 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13814757

                                           
Query: 148      gccaccaggtgctttgtcctccaccaa 174
                |||||||||||| ||||| || |||||
Sbjct: 13814758 gccaccaggtgccttgtcttcgaccaa 13814784



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                            
Query: 236      gagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgcatta 295
                ||||||||||||||||||||||||||||| |||||||| ||||||||||| | | | |||
Sbjct: 13815011 gagcatctctgtcgccttatttcattcaccacttcatttactttcctggaaagttcgtta 13815070

                                     
Query: 296      tcaaattgctccaatgccaac 316
                ||| ||||||||||| |||||
Sbjct: 13815071 tcatattgctccaataccaac 13815091



to top

>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score =  113 bits (57), Expect = 6e-22
 Identities = 144/176 (81%)
 Strand = Plus / Plus

                                                                         
Query: 318   gatttggtgcaccagccaaggatgagagaccaaatatttgctccagggnggccgggttca 377
             |||||||| | |||||||| ||||| | ||||||||||||||| |||| ||| ||||| |
Sbjct: 29774 gatttggtactccagccaaagatgaaacaccaaatatttgctcaagggtggcagggttta 29833

                                                                         
Query: 378   ccgcatttccgacatagataaaaccatcctcgccattntccaataaataaatcccatcat 437
             | |||||||||||||| | |||||||||||| ||||| ||||| |||||||| |||  ||
Sbjct: 29834 ctgcatttccgacataaacaaaaccatcctcaccattttccaacaaataaattccaaaat 29893

                                                                     
Query: 438   cctgnatatnctcactatngagagnaaggggatnnggaataagggaancctcatca 493
             |  |  ||| |||||||| ||| | |||||| |  || ||||||||| | ||||||
Sbjct: 29894 caagcgtattctcactattgagtgtaagggggtttggtataagggaatcatcatca 29949



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 88    tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
             ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 29221 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 29280

                                        
Query: 148   gccaccaggtgctttgtcctccaccaa 174
             |||||||||||| ||||| || |||||
Sbjct: 29281 gccaccaggtgccttgtcttcgaccaa 29307



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                         
Query: 236   gagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgcatta 295
             ||||||||||||||||||||||||||||| |||||||| ||||||||||| | | | |||
Sbjct: 29534 gagcatctctgtcgccttatttcattcaccacttcatttactttcctggaaagttcgtta 29593

                                  
Query: 296   tcaaattgctccaatgccaac 316
             ||| ||||||||||| |||||
Sbjct: 29594 tcatattgctccaataccaac 29614



to top

>gb|AY107397.1| Zea mays PCO076624 mRNA sequence
          Length = 2256

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 182/231 (78%)
 Strand = Plus / Minus

                                                                        
Query: 229  caagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaa 288
            |||||| ||||| ||||| || ||||||||||| || ||||| || || ||||| || | 
Sbjct: 1698 caagtatgagcacctctggcgtcttatttcatttacaacttcgttaaccttcctcgagag 1639

                                                                        
Query: 289  tgcattatcaaattgctccaatgccaacagatttggtgcaccagccaaggatgagagacc 348
            | | || |||||||||||||| |||||| |   ||||    ||||||| || |||| |||
Sbjct: 1638 ttcgttgtcaaattgctccaacgccaactgggctggtaatgcagccaaagaagagacacc 1579

                                                                        
Query: 349  aaatatttgctccagggnggccgggttcaccgcatttccgacatagataaaaccatcctc 408
             |||||||| |||||||  ||||| || |||   ||||| ||||| || |||||||||||
Sbjct: 1578 gaatatttgttccagggtagccggatttaccatgtttcctacataaattaaaccatcctc 1519

                                                               
Query: 409  gccattntccaataaataaatcccatcatcctgnatatnctcactatngag 459
             ||||| |||||||||||||  ||||| || || | || |||||||| |||
Sbjct: 1518 accattttccaataaataaactccatcctcttgtacattctcactattgag 1468



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 88   tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1839 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1780

                                    
Query: 148  gccaccaggtgctttgtcctccac 171
            | | ||||| || |||||||||||
Sbjct: 1779 gacgccaggcgccttgtcctccac 1756



to top

>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence
          Length = 1961

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 88   tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1302 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1243

                                    
Query: 148  gccaccaggtgctttgtcctccac 171
            | | ||||| || |||||||||||
Sbjct: 1242 gacgccaggcgccttgtcctccac 1219



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 181/231 (78%)
 Strand = Plus / Minus

                                                                        
Query: 229  caagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaa 288
            |||||| ||||| ||||| || ||||||||||| || ||||  || || ||||| || | 
Sbjct: 1161 caagtatgagcacctctggcgtcttatttcatttacaacttggttaaccttcctcgagag 1102

                                                                        
Query: 289  tgcattatcaaattgctccaatgccaacagatttggtgcaccagccaaggatgagagacc 348
            | | || |||||||||||||| |||||| |   ||||    ||||||| || |||| |||
Sbjct: 1101 ttcgttgtcaaattgctccaacgccaactgggctggtaatgcagccaaagaagagacacc 1042

                                                                        
Query: 349  aaatatttgctccagggnggccgggttcaccgcatttccgacatagataaaaccatcctc 408
             |||||||| |||||||  ||||| || |||   ||||| ||||| || |||||||||||
Sbjct: 1041 gaatatttgttccagggtagccggatttaccatgtttcctacataaattaaaccatcctc 982

                                                               
Query: 409  gccattntccaataaataaatcccatcatcctgnatatnctcactatngag 459
             ||||| |||||||||||||  ||||| || || | || |||||||| |||
Sbjct: 981  accattttccaataaataaactccatcctcttgtacattctcactattgag 931



to top

>gb|BT016818.1| Zea mays clone Contig651 mRNA sequence
          Length = 686

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 88  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
           ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 377 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 436

                                   
Query: 148 gccaccaggtgctttgtcctccac 171
           | | ||||| || |||||||||||
Sbjct: 437 gacgccaggcgccttgtcctccac 460



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 229 caagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaa 288
           |||||| ||||| ||||| || ||||||||||| || ||||| || || ||||| || | 
Sbjct: 518 caagtatgagcacctctggcgtcttatttcatttacaacttcgttaaccttcctcgagag 577

                                       
Query: 289 tgcattatcaaattgctccaatgccaac 316
           | | || |||||||||||||| ||||||
Sbjct: 578 ttcgttgtcaaattgctccaacgccaac 605



to top

>gb|BT016902.1| Zea mays clone Contig735 mRNA sequence
          Length = 987

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                       
Query: 88  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 438 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 497

                                
Query: 148 gccaccaggtgctttgtcctc 168
           | | |||||||| ||||||||
Sbjct: 498 gacgccaggtgccttgtcctc 518



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 85/106 (80%)
 Strand = Plus / Plus

                                                                       
Query: 330 cagccaaggatgagagaccaaatatttgctccagggnggccgggttcaccgcatttccga 389
           ||||||| || |||| ||| |||||||| |||||||  ||||| || |||  |||||| |
Sbjct: 680 cagccaaagaagagacaccgaatatttgttccagggtagccggatttaccatatttccta 739

                                                         
Query: 390 catagataaaaccatcctcgccattntccaataaataaatcccatc 435
           | ||||  | ||||||||| || || ||||||||||| | ||||||
Sbjct: 740 cgtagactagaccatcctcaccgttttccaataaatagaccccatc 785



to top

>gb|AY105862.1| Zea mays PCO076623 mRNA sequence
          Length = 924

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                       
Query: 88  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 147
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 830 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 771

                                
Query: 148 gccaccaggtgctttgtcctc 168
           | | |||||||| ||||||||
Sbjct: 770 gacgccaggtgccttgtcctc 750



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 188/244 (77%)
 Strand = Plus / Minus

                                                                       
Query: 192 ctccagacgggtcgccctttcggcacagtctcagtcncaagtaagagcatctctgtcgcc 251
           ||||||| || |||||| ||| ||| |||||||  | |||||| ||||| ||||| ||||
Sbjct: 726 ctccagatggttcgccccttctgcatagtctcaacctcaagtatgagcacctctggcgcc 667

                                                                       
Query: 252 ttatttcattcacgacttcattcactttcctggacaatgcattatcaaattgctccaatg 311
           | |||||||| || ||||| || |  ||||| || | | | || ||||| ||||||||||
Sbjct: 666 taatttcatttacaacttcgttaatcttcctcgagagttcgttgtcaaactgctccaatg 607

                                                                       
Query: 312 ccaacagatttggtgcaccagccaaggatgagagaccaaatatttgctccagggnggccg 371
           | ||| |   ||||    ||||||| || |||| ||| |||||||| |||||||  ||||
Sbjct: 606 ctaactgggctggtaatgcagccaaagaagagacaccgaatatttgttccagggtagccg 547

                                                                       
Query: 372 ggttcaccgcatttccgacatagataaaaccatcctcgccattntccaataaataaatcc 431
           | || |||   ||||| || ||||  | ||||||||| || || ||||||||||| | ||
Sbjct: 546 gatttaccatgtttcctacgtagactagaccatcctcaccgttttccaataaatagaccc 487

               
Query: 432 catc 435
           ||||
Sbjct: 486 catc 483



to top

>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome
          Length = 191028

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 382    atttccgacatagataaaaccat 404
              |||||||||||||||||||||||
Sbjct: 174199 atttccgacatagataaaaccat 174177



to top

>ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
          binding / nucleic acid binding AT1G29400 (AML5)
          transcript variant AT1G29400.1 mRNA, complete cds
          Length = 2880

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 52 aatctctaccaaccaaaata 71
          ||||||||||||||||||||
Sbjct: 34 aatctctaccaaccaaaata 15



to top

>ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
          binding / nucleic acid binding AT1G29400 (AML5)
          transcript variant AT1G29400.2 mRNA, complete cds
          Length = 2921

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 52 aatctctaccaaccaaaata 71
          ||||||||||||||||||||
Sbjct: 78 aatctctaccaaccaaaata 59



to top

>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
              complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     atgaagcttcaggtcatcttgctc 103
              |||||||||||| |||||||||||
Sbjct: 135763 atgaagcttcagttcatcttgctc 135786



to top

>gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosome 9, complete sequence
          Length = 209165

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   aataaataaatcccatcatc 438
             ||||||||||||||||||||
Sbjct: 63923 aataaataaatcccatcatc 63904



to top

>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     ccaaaatatcacaccaatga 83
              ||||||||||||||||||||
Sbjct: 103131 ccaaaatatcacaccaatga 103112



to top

>gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein MEI2
          (At1g29400) mRNA, complete cds
          Length = 2927

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 52 aatctctaccaaccaaaata 71
          ||||||||||||||||||||
Sbjct: 73 aatctctaccaaccaaaata 54



to top

>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete
              sequence
          Length = 224603

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcattcacgacttcattca 275
              ||||||||||||||||||||
Sbjct: 105313 ttcattcacgacttcattca 105294



to top

>gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, putative
          (F15D2.30) mRNA, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 52 aatctctaccaaccaaaata 71
          ||||||||||||||||||||
Sbjct: 73 aatctctaccaaccaaaata 54



to top

>dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-19777, similar to human
            v-raf murine sarcoma viral oncogene homolog B1 (BRAF),
            mRNA, RefSeq: NM_004333.2
          Length = 2849

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  accaggtgctttgtcctcca 170
            ||||||||||||||||||||
Sbjct: 2314 accaggtgctttgtcctcca 2333



to top

>gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete
             sequence
          Length = 130653

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aatctctaccaaccaaaata 71
             ||||||||||||||||||||
Sbjct: 36872 aatctctaccaaccaaaata 36891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,866,328
Number of Sequences: 3902068
Number of extensions: 4866328
Number of successful extensions: 77317
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77187
Number of HSP's gapped (non-prelim): 129
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top