>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 463     cacatcagcgcgaccagcgccgccac 488
               ||||||||||||||||||||| ||||
Sbjct: 1975210 cacatcagcgcgaccagcgccaccac 1975235

>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   caaagaactagaggtcttgga 156
             |||||||||||||||||||||
Sbjct: 71378 caaagaactagaggtcttgga 71398

>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18,
             complete sequence
          Length = 95339

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   caaagacaacacaacagtcaa 304
             |||||||||||||||||||||
Sbjct: 54424 caaagacaacacaacagtcaa 54444

>gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, complete sequence
          Length = 40961

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   agcattgctgctgccatgacc 525
             |||||||||||||||||||||
Sbjct: 16394 agcattgctgctgccatgacc 16414

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 468     cagcgcgaccagcgccgccac 488
               |||||||||||||||||||||
Sbjct: 4528314 cagcgcgaccagcgccgccac 4528294

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 464     acatcagcgcgaccagcgccg 484
               |||||||||||||||||||||
Sbjct: 2784363 acatcagcgcgaccagcgccg 2784343



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 468     cagcgcgaccagcgccgcca 487
               ||||||||||||||||||||
Sbjct: 7131609 cagcgcgaccagcgccgcca 7131628

>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18,
            complete sequence
          Length = 120346

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  caaagacaacacaacagtcaa 304
            |||||||||||||||||||||
Sbjct: 8337 caaagacaacacaacagtcaa 8317

>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    acagactcagatgacacaca 73
             ||||||||||||||||||||
Sbjct: 96729 acagactcagatgacacaca 96748

>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     acacacataagcaaataaaa 86
              ||||||||||||||||||||
Sbjct: 208660 acacacataagcaaataaaa 208641

>ref|XM_705503.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.144), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 cttcttcttcatcttgcaga 268
           ||||||||||||||||||||
Sbjct: 160 cttcttcttcatcttgcaga 141

>ref|XM_705490.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.7784), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 cttcttcttcatcttgcaga 268
           ||||||||||||||||||||
Sbjct: 160 cttcttcttcatcttgcaga 141

>gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complete sequence
          Length = 133439

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    cacataagcaaataaaagcaaaca 93
             |||||||||||||||||| |||||
Sbjct: 35930 cacataagcaaataaaagtaaaca 35953

>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete
             sequence
          Length = 176004

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ataagcaaataaaagcaaac 92
             ||||||||||||||||||||
Sbjct: 34130 ataagcaaataaaagcaaac 34149

>emb|AL590422.15| Human DNA sequence from clone RP11-444D13 on chromosome 1 Contains part
             of the RGL1 gene for ral guanine nucleotide dissociation
             stimulator-like 1 and a novel gene, complete sequence
          Length = 198312

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    taagcaaataaaagcaaaca 93
             ||||||||||||||||||||
Sbjct: 33853 taagcaaataaaagcaaaca 33834

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 466     atcagcgcgaccagcgccgc 485
               ||||||||||||||||||||
Sbjct: 1205273 atcagcgcgaccagcgccgc 1205292

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 465     catcagcgcgaccagcgccgccac 488
               ||||||| ||||||||||||||||
Sbjct: 2897582 catcagcccgaccagcgccgccac 2897605

>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    gcattgctgctgccatgacc 525
              ||||||||||||||||||||
Sbjct: 340298 gcattgctgctgccatgacc 340317

>gb|AC116315.2| Homo sapiens chromosome 1 clone RP11-211J9, complete sequence
          Length = 154057

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   cacataagcaaataaaagca 89
            ||||||||||||||||||||
Sbjct: 6776 cacataagcaaataaaagca 6757

>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306,  section 434 of 469 of the
            complete genome
          Length = 9445

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  ccagcgccgccacggcaacg 495
            ||||||||||||||||||||
Sbjct: 6348 ccagcgccgccacggcaacg 6329

>gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, complete sequence
          Length = 135063

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    cacataagcaaataaaagca 89
             ||||||||||||||||||||
Sbjct: 81579 cacataagcaaataaaagca 81560

>gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471
          Length = 36241

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  gcattgctgctgccatgacc 525
            ||||||||||||||||||||
Sbjct: 4845 gcattgctgctgccatgacc 4826

>gb|AC008900.5| Homo sapiens chromosome 5 clone CTD-2242C17, complete sequence
          Length = 166253

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   actagcaggccttctccctg 204
             ||||||||||||||||||||
Sbjct: 45380 actagcaggccttctccctg 45361

>gb|AC133597.5| Mus musculus BAC clone RP24-313B5 from chromosome 16, complete sequence
          Length = 192699

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     acagactcagatgacacaca 73
              ||||||||||||||||||||
Sbjct: 192537 acagactcagatgacacaca 192518

>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence
          Length = 114802

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  actagcaggccttctccctg 204
            ||||||||||||||||||||
Sbjct: 7045 actagcaggccttctccctg 7064

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 466     atcagcgcgaccagcgccgc 485
               ||||||||||||||||||||
Sbjct: 2340305 atcagcgcgaccagcgccgc 2340324

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 465     catcagcgcgaccagcgccg 484
               ||||||||||||||||||||
Sbjct: 1722446 catcagcgcgaccagcgccg 1722427

>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20,
              complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     aagcaaataaaagcaaacaa 94
              ||||||||||||||||||||
Sbjct: 126303 aagcaaataaaagcaaacaa 126322

>dbj|AP001189.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-672A2, complete
             sequence
          Length = 186389

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ggaaaaatagaacagactca 62
             ||||||||||||||||||||
Sbjct: 28010 ggaaaaatagaacagactca 28029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,646,705
Number of Sequences: 3902068
Number of extensions: 4646705
Number of successful extensions: 103961
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103495
Number of HSP's gapped (non-prelim): 466
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)