ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags22b06 |
|---|---|
| Clone Library Name | barley_pub |
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 103 bits (257), Expect = 5e-22 Identities = 64/167 (38%), Positives = 89/167 (53%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXX 475 KGYAFC Y DL++TD + A LNG+++GDK L V+RA+ G A+ N Sbjct: 248 KGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVG-AKNAQNAANTTQSVMLQVPG 306 Query: 474 XXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLS 295 G PT+V+CL +VT DEL+ ++ E KYG + V IPRP + Sbjct: 307 LSNVVTSGP-PTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRP-IE 364 Query: 294 GEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 154 G V G GKVF+E+ V KA+ A+ GRKF VV ++ +K+ Sbjct: 365 GVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKY 411
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 99.0 bits (245), Expect = 1e-20 Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPR----PEQENIXXXXXX 487 KGYAFC Y D+NVTD A A LNG+++GDK L V+RA+ G+ P N Sbjct: 300 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQ 359 Query: 486 XXXXXXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPR 307 +G PT+V+CL +V +EL +R E KYG + + IPR Sbjct: 360 VPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPR 419 Query: 306 PHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 172 P + G V G GK+F+E+ V KA + GRKF VV + Sbjct: 420 P-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 463
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 99.0 bits (245), Expect = 1e-20 Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPR----PEQENIXXXXXX 487 KGYAFC Y D+NVTD A A LNG+++GDK L V+RA+ G+ P N Sbjct: 300 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQ 359 Query: 486 XXXXXXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPR 307 +G PT+V+CL +V +EL +R E KYG + + IPR Sbjct: 360 VPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPR 419 Query: 306 PHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 172 P + G V G GK+F+E+ V KA + GRKF VV + Sbjct: 420 P-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 463
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 99.0 bits (245), Expect = 1e-20 Identities = 59/167 (35%), Positives = 82/167 (49%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXX 475 KGYAF Y D +TD A A LNG+++GDK L V+ A ++ N Sbjct: 331 KGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQ-----QRHNTNLPNSASAIA 385 Query: 474 XXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLS 295 T+++CL +VT DELK +R E KYG + + IPRP+ Sbjct: 386 GIDLSQGAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPY-E 444 Query: 294 GEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 154 PV GVGKVF+E+A +A+ A+ GRKF VV +Y +K+ Sbjct: 445 DHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 97.1 bits (240), Expect = 4e-20 Identities = 58/167 (34%), Positives = 81/167 (48%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXX 475 KGYAF Y D +TD A A LNG+++GDK L V+ A + N Sbjct: 322 KGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHLPN-----SASAIA 376 Query: 474 XXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLS 295 T+++CL +VT DEL+ +R E KYG + + IPRP+ Sbjct: 377 GIDLSQGAGRATEILCLMNMVTEDELRSDEDYEEILEDVREECSKYGIVRSLEIPRPY-D 435 Query: 294 GEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 154 PV GVGKVF+E+A +A+ A+ GRKF VV +Y +K+ Sbjct: 436 DHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 482
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 64.3 bits (155), Expect = 3e-10 Identities = 41/167 (24%), Positives = 73/167 (43%) Frame = -1 Query: 660 TQKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXX 481 + KG+ FC +++ + ++A + L+G L + A G Q ++ N Sbjct: 349 SSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVGLNQAMIDKSN-----GMAI 403 Query: 480 XXXXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPH 301 ++PT+V+ L ++T DE+ ++ + YG L+ + IPR Sbjct: 404 LTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSI 463 Query: 300 LSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPEN 160 + G GKVF+ Y+D+ + A M G KF +V FY E+ Sbjct: 464 GTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGED 510
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 49/94 (52%) Frame = -1 Query: 447 LPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 268 LPT V+ L V+ D L+ ++ E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 267 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 166 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 49/94 (52%) Frame = -1 Query: 447 LPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 268 LPT V+ L V+ D L+ ++ E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 267 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 166 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 49/94 (52%) Frame = -1 Query: 447 LPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 268 LPT V+ L V+ D L+ ++ E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 267 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 166 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/97 (36%), Positives = 48/97 (49%) Frame = -1 Query: 444 PTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKV 265 PTKVV L +V A E+ + E KYG + K VI + G P ++ Sbjct: 307 PTKVVLLRNMVGAGEVDEDLEVET-----KEECEKYGKVGKCVIFE--IPGAPDDEAVRI 359 Query: 264 FLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 154 FLE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 360 FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 396
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/97 (36%), Positives = 48/97 (49%) Frame = -1 Query: 444 PTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKV 265 PTKVV L +V A E+ + E KYG + K VI + G P ++ Sbjct: 303 PTKVVLLRNMVGAGEVDEDLEVET-----KEECEKYGKVGKCVIFE--IPGAPDDEAVRI 355 Query: 264 FLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 154 FLE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 356 FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 392
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/66 (37%), Positives = 37/66 (56%) Frame = -1 Query: 351 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 172 E GKYG + +V+I PV ++F++++ + +TKA + GR FGG V A F Sbjct: 307 ECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATF 366 Query: 171 YPENKF 154 Y E KF Sbjct: 367 YDEEKF 372
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.4 bits (85), Expect = 0.040 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 342 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 163 KYG +V + + L G++F+++ + D + KA T +H R FGG + A PE Sbjct: 540 KYGKVVHIAVVPNEL--------GQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPE 591 Query: 162 NKF 154 + Sbjct: 592 TDY 594
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 35.0 bits (79), Expect = 0.20 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = -1 Query: 651 GYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPR 523 GY F Y D N D A LNG+K+ KT+ V A SA R Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 35.0 bits (79), Expect = 0.20 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = -1 Query: 651 GYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPR 523 GY F Y D N D A LNG+K+ KT+ V A SA R Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR 123
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 34.7 bits (78), Expect = 0.26 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = -1 Query: 351 EAGKYGNLVKVVI----PRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPV 184 E K+G + +V+I + + + K+F+E++ + + K A+ GR FGG V Sbjct: 561 ECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRV 620 Query: 183 VAVFYPENKF 154 VA Y + F Sbjct: 621 VAELYDQGIF 630
>RS2_LEIAM (O43992) 40S ribosomal protein S2| Length = 265 Score = 33.9 bits (76), Expect = 0.45 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -1 Query: 345 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYA---DVDGSTKAKTAMHGRKFGGNPVVAV 175 GK G++ ++P P +G + V K LE+A DV S++ KT H GN ++A Sbjct: 172 GKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTH-----GNLIMAT 226 Query: 174 FYPENK 157 FY K Sbjct: 227 FYALRK 232
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = -1 Query: 351 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 172 E K+G ++ + + + S G V+++ + + A A+HGR F G + A + Sbjct: 453 ECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 505 Query: 171 YP 166 P Sbjct: 506 VP 507
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = -1 Query: 351 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 172 E K+G ++ + + + S G V+++ + + A A+HGR F G + A + Sbjct: 453 ECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 505 Query: 171 YP 166 P Sbjct: 506 VP 507
>SRA31_CAEEL (Q18881) Serpentine receptor class alpha-31 (Protein sra-31)| Length = 338 Score = 31.6 bits (70), Expect = 2.2 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 70 CKSNELHKTLLALEKRDNLCCRIIVLFSKLVLGV-EDRNNWVSTKFPSMHRRLCFGGAIN 246 C S E+ TL + N C ++++ S + L V R W + FP+ R L F IN Sbjct: 7 CTSEEIRLTLTSSFMMGNHCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRTLLFSAIIN 66
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 30.8 bits (68), Expect = 3.8 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 4/156 (2%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV----RRANQGSAQPRPEQENIXXXXXX 487 KGY F Y + A LNG+ + DK + V RR + S + + N+ Sbjct: 164 KGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVY----- 218 Query: 486 XXXXXXXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPR 307 V L + T D+LK G+YG + V+ + Sbjct: 219 -----------------VKNLAESTTDDDLKNAF-------------GEYGKITSAVVMK 248 Query: 306 PHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKF 199 GE S G F+ + + D + +A +++G KF Sbjct: 249 ---DGEGKS-KGFGFVNFENADDAARAVESLNGHKF 280
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 660 TQKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQ 541 + G+ FC + + AC LN +K+ K + V RA+Q Sbjct: 50 SHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQ 89
>RS2_DICDI (P27685) 40S ribosomal protein S2 (S4) (LLRep3 protein)| Length = 265 Score = 30.4 bits (67), Expect = 4.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -1 Query: 345 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDG---STKAKTAMHGRKFGGNPVVAV 175 GK G++ ++P P +G + V K L+YA VD S++ KT + GN V+A Sbjct: 173 GKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKT-----RTMGNFVMAT 227 Query: 174 FYPENK 157 F+ K Sbjct: 228 FFAITK 233
>ZN418_HUMAN (Q8TF45) Zinc finger protein 418| Length = 676 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3 Query: 168 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQ 275 G RP + SFH S SLL HQ +HT R+P++ Sbjct: 643 GERPYECSECGKSFHRSSSLL--RHQRVHTERSPYK 676 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 168 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQLQK 284 G RP + G SFH S SLL HQ HT P++ ++ Sbjct: 534 GERPYECGECGKSFHQSSSLL--RHQKTHTAERPYECRE 570
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 29.6 bits (65), Expect = 8.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQE 511 KG+ F Y+D T +A NGIK+ +T+ V + A P+ +E Sbjct: 77 KGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRA-PKDSEE 123
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 29.6 bits (65), Expect = 8.4 Identities = 37/147 (25%), Positives = 58/147 (39%) Frame = -1 Query: 651 GYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXXX 472 GYAF + A +LNG+ + +K L V A RP E+I Sbjct: 127 GYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA-------RPGGESIKDTNLY----- 174 Query: 471 XXXXXVGALPTKVVCLTQVVTADELKXXXXXXXXXXXMRLEAGKYGNLVKVVIPRPHLSG 292 V L + +T DEL+ GKYGN+V+ I R L+G Sbjct: 175 ------------VTNLPRTITDDELEKIF-------------GKYGNIVQKNILRDKLTG 209 Query: 291 EPVSGVGKVFLEYADVDGSTKAKTAMH 211 +P G F+ + + + +A +A++ Sbjct: 210 KP---RGVAFVRFNKREEAQEAISALN 233
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV 556 KG+ F + + +A A+LNG ++GDK L V Sbjct: 285 KGFGFVTMTNYEESAMAIASLNGYRLGDKILQV 317
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 654 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 547 KGY FC YQD A LNG + + L V A Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,890,888 Number of Sequences: 219361 Number of extensions: 1970725 Number of successful extensions: 4738 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4714 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
