ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21m05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472544.1| Oryza sativa (japonica cultivar-group), predic... 101 3e-18
2emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 101 3e-18
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4dbj|AK111961.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
5gb|BT023977.1| Zea mays clone EL01N0364F05 mRNA sequence 60 1e-05
6gb|AY112143.1| Zea mays CL35364_1 mRNA sequence 52 0.002
7ref|XM_466148.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
9dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
10dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
11emb|AL118517.17|HSJ125M10 Human DNA sequence from clone RP1-125M... 44 0.57
12gb|DQ020531.1| Raja clavata clone Rclac05 5S ribosomal RNA nontr... 40 8.9
13gb|DQ020525.1| Raja asterias clone Rastc08 5S ribosomal RNA nont... 40 8.9
14gb|AC117518.3| Homo sapiens X BAC RP13-106B4 (Roswell Park Cance... 40 8.9
15emb|AL603840.9| Human DNA sequence from clone RP11-365M18 on chr... 40 8.9
16gb|AC005185.1| Homo sapiens Xp22 BAC GSHB-383H3 (Genome Systems ... 40 8.9
17emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in... 40 8.9
18emb|CT806410.3| CH251-575K15, complete sequence 40 8.9
19emb|CT573089.2| RP43-058A24, complete sequence 40 8.9 
>ref|XM_472544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2163

 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                        
Query: 533  tgctgattttgtacctccattgaacatacaacattggagcactgaccgaaaccaggatca 592
            ||||||||||||  ||||||||||||| || || | ||| | ||||| ||||||||||||
Sbjct: 1757 tgctgattttgtggctccattgaacatccagcagttgagaattgacccaaaccaggatca 1698

                                                                       
Query: 593  tttcgtatatcagcaagctcgggactaccaatcaagttgagatcacatattttaaatga 651
            |||||||  ||||||| ||| ||||||||||  | ||| ||||||||||||||||||||
Sbjct: 1697 tttcgtaattcagcaacctctggactaccaactaggtttagatcacatattttaaatga 1639



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 345  gtagtccggaggctgctggtcccaaacctccataaaac 382
            ||||||| |||| |||||||||||||||||||||||||
Sbjct: 2148 gtagtcctgaggttgctggtcccaaacctccataaaac 2111
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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                         
Query: 533   tgctgattttgtacctccattgaacatacaacattggagcactgaccgaaaccaggatca 592
             ||||||||||||  ||||||||||||| || || | ||| | ||||| ||||||||||||
Sbjct: 33363 tgctgattttgtggctccattgaacatccagcagttgagaattgacccaaaccaggatca 33304

                                                                        
Query: 593   tttcgtatatcagcaagctcgggactaccaatcaagttgagatcacatattttaaatga 651
             |||||||  ||||||| ||| ||||||||||  | ||| ||||||||||||||||||||
Sbjct: 33303 tttcgtaattcagcaacctctggactaccaactaggtttagatcacatattttaaatga 33245



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 345   gtagtccggaggctgctggtcccaaacctccataaaac 382
             ||||||| |||| |||||||||||||||||||||||||
Sbjct: 34904 gtagtcctgaggttgctggtcccaaacctccataaaac 34867
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                            
Query: 533      tgctgattttgtacctccattgaacatacaacattggagcactgaccgaaaccaggatca 592
                ||||||||||||  ||||||||||||| || || | ||| | ||||| ||||||||||||
Sbjct: 21383613 tgctgattttgtggctccattgaacatccagcagttgagaattgacccaaaccaggatca 21383554

                                                                           
Query: 593      tttcgtatatcagcaagctcgggactaccaatcaagttgagatcacatattttaaatga 651
                |||||||  ||||||| ||| ||||||||||  | ||| ||||||||||||||||||||
Sbjct: 21383553 tttcgtaattcagcaacctctggactaccaactaggtttagatcacatattttaaatga 21383495



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 345      gtagtccggaggctgctggtcccaaacctccataaaac 382
                ||||||| |||| |||||||||||||||||||||||||
Sbjct: 21385154 gtagtcctgaggttgctggtcccaaacctccataaaac 21385117
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>dbj|AK111961.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D07, full
           insert sequence
          Length = 1103

 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                       
Query: 533 tgctgattttgtacctccattgaacatacaacattggagcactgaccgaaaccaggatca 592
           ||||||||||||  ||||||||||||| || || | ||| | ||||| ||||||||||||
Sbjct: 368 tgctgattttgtggctccattgaacatccagcagttgagaattgacccaaaccaggatca 309

                                                                      
Query: 593 tttcgtatatcagcaagctcgggactaccaatcaagttgagatcacatattttaaatga 651
           |||||||  ||||||| ||| ||||||||||  | ||| ||||||||||||||||||||
Sbjct: 308 tttcgtaattcagcaacctctggactaccaactaggtttagatcacatattttaaatga 250



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 345 gtagtccggaggctgctggtcccaaacctccataaaac 382
           ||||||| |||| |||||||||||||||||||||||||
Sbjct: 759 gtagtcctgaggttgctggtcccaaacctccataaaac 722
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>gb|BT023977.1| Zea mays clone EL01N0364F05 mRNA sequence
          Length = 1951

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 614  ggactaccaatcaagttgagatcacatattttaaatgagcta 655
            |||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 1079 ggactaccaaccaggttgagatcacgtattttaaatgagcta 1038



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 353  gaggctgctggtcccaaacctccataaaac 382
            |||| |||||||||||||||||||||||||
Sbjct: 1573 gaggttgctggtcccaaacctccataaaac 1544
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>gb|AY112143.1| Zea mays CL35364_1 mRNA sequence
          Length = 898

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 353 gaggctgctggtcccaaacctccataaaac 382
           |||| |||||||||||||||||||||||||
Sbjct: 378 gaggttgctggtcccaaacctccataaaac 407
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>ref|XM_466148.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2385

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 616  actaccaatcaagttgagatcacatattttaaatg 650
            |||||||||||||||  |||| |||||||||||||
Sbjct: 1908 actaccaatcaagttctgatcgcatattttaaatg 1874
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 616      actaccaatcaagttgagatcacatattttaaatg 650
                |||||||||||||||  |||| |||||||||||||
Sbjct: 20698165 actaccaatcaagttctgatcgcatattttaaatg 20698131
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>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0451A10
          Length = 137046

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 616   actaccaatcaagttgagatcacatattttaaatg 650
             |||||||||||||||  |||| |||||||||||||
Sbjct: 49271 actaccaatcaagttctgatcgcatattttaaatg 49237
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>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0040I22
          Length = 134273

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 616   actaccaatcaagttgagatcacatattttaaatg 650
             |||||||||||||||  |||| |||||||||||||
Sbjct: 95020 actaccaatcaagttctgatcgcatattttaaatg 94986
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>emb|AL118517.17|HSJ125M10 Human DNA sequence from clone RP1-125M10 on chromosome 6q25.1-25.3,
             complete sequence
          Length = 78340

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 527   aaatgctgctgattttgtacct 548
             ||||||||||||||||||||||
Sbjct: 13613 aaatgctgctgattttgtacct 13592
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>gb|DQ020531.1| Raja clavata clone Rclac05 5S ribosomal RNA nontranscribed spacer,
           partial sequence
          Length = 445

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 gtgagatgctgctggtgctg 234
           ||||||||||||||||||||
Sbjct: 308 gtgagatgctgctggtgctg 327
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>gb|DQ020525.1| Raja asterias clone Rastc08 5S ribosomal RNA nontranscribed spacer,
           partial sequence
          Length = 440

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 gtgagatgctgctggtgctg 234
           ||||||||||||||||||||
Sbjct: 303 gtgagatgctgctggtgctg 322
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>gb|AC117518.3| Homo sapiens X BAC RP13-106B4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170368

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 635    tcacatattttaaatgagct 654
              ||||||||||||||||||||
Sbjct: 168969 tcacatattttaaatgagct 168988
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>emb|AL603840.9| Human DNA sequence from clone RP11-365M18 on chromosome 1 Contains part
             of a novel gene, complete sequence
          Length = 178121

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   aaatgctgctgattttgtac 546
             ||||||||||||||||||||
Sbjct: 83307 aaatgctgctgattttgtac 83326
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>gb|AC005185.1| Homo sapiens Xp22 BAC GSHB-383H3 (Genome Systems Human BAC Library)
             complete sequence
          Length = 124351

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   tcacatattttaaatgagct 654
             ||||||||||||||||||||
Sbjct: 13971 tcacatattttaaatgagct 13990
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>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19,
              complete sequence
          Length = 156150

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 233    tgagcagaaatctaactgtttatt 256
              ||||||||| ||||||||||||||
Sbjct: 121739 tgagcagaattctaactgtttatt 121762
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>emb|CT806410.3| CH251-575K15, complete sequence
          Length = 155922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 635    tcacatattttaaatgagct 654
              ||||||||||||||||||||
Sbjct: 141527 tcacatattttaaatgagct 141546
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>emb|CT573089.2| RP43-058A24, complete sequence
          Length = 216040

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   tcacatattttaaatgagct 654
             ||||||||||||||||||||
Sbjct: 42117 tcacatattttaaatgagct 42098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,757,696
Number of Sequences: 3902068
Number of extensions: 5757696
Number of successful extensions: 112546
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112433
Number of HSP's gapped (non-prelim): 113
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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