ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosom... 44 0.18
2gb|AC005704.1| Homo sapiens X BAC GSHB-227L7 (Genome Systems Hum... 42 0.70
3ref|NM_010253.2| Mus musculus galanin (Gal), mRNA 40 2.8
4emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA 40 2.8
5emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA 40 2.8
6gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, comp... 40 2.8
7gb|BC044055.1| Mus musculus galanin, mRNA (cDNA clone MGC:54666 ... 40 2.8
8dbj|AK133522.1| Mus musculus 11 days pregnant adult female ovary... 40 2.8
9gb|AC060835.7| Homo sapiens BAC clone RP11-785F11 from 4, comple... 40 2.8
10gb|AC124627.22| Mus musculus chromosome 19, clone RP23-435K14, c... 40 2.8
11emb|AL136520.3|CNS01DW9 Human chromosome 14 DNA sequence BAC C-2... 40 2.8
12gb|L38579.1|MUSGALAN05 Mus musculus galanin gene, exon 5 40 2.8
13emb|AL626765.22| Mouse DNA sequence from clone RP23-179N14 on ch... 40 2.8
14emb|Z23069.1|MMGALANMR M.musculus mRNA for galanin 40 2.8
15emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-4... 40 2.8

>gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosome unknown, complete
              sequence
          Length = 190789

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 72     agctatttttccagtttattag 93
              ||||||||||||||||||||||
Sbjct: 132225 agctatttttccagtttattag 132204



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>gb|AC005704.1| Homo sapiens X BAC GSHB-227L7 (Genome Systems Human BAC Library)
             complete sequence
          Length = 99033

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   caacatatctcttattatatg 176
             |||||||||||||||||||||
Sbjct: 45801 caacatatctcttattatatg 45821



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>ref|NM_010253.2| Mus musculus galanin (Gal), mRNA
          Length = 716

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tgcggacaatgttgctctca 61
           ||||||||||||||||||||
Sbjct: 414 tgcggacaatgttgctctca 395



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>emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA
          Length = 724

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 tactcagcagcacgtcgcaa 196
           ||||||||||||||||||||
Sbjct: 562 tactcagcagcacgtcgcaa 581



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>emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA
          Length = 677

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 tactcagcagcacgtcgcaa 196
           ||||||||||||||||||||
Sbjct: 516 tactcagcagcacgtcgcaa 535



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>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence
          Length = 184569

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    atggctaaacatgccaaaag 131
              ||||||||||||||||||||
Sbjct: 109010 atggctaaacatgccaaaag 108991



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>gb|BC044055.1| Mus musculus galanin, mRNA (cDNA clone MGC:54666 IMAGE:6476459),
           complete cds
          Length = 716

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tgcggacaatgttgctctca 61
           ||||||||||||||||||||
Sbjct: 414 tgcggacaatgttgctctca 395



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>dbj|AK133522.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
           RIKEN full-length enriched library, clone:5033417N12
           product:galanin, full insert sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tgcggacaatgttgctctca 61
           ||||||||||||||||||||
Sbjct: 430 tgcggacaatgttgctctca 411



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>gb|AC060835.7| Homo sapiens BAC clone RP11-785F11 from 4, complete sequence
          Length = 160624

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    aagagaagctatttttccag 85
             ||||||||||||||||||||
Sbjct: 70608 aagagaagctatttttccag 70627



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>gb|AC124627.22| Mus musculus chromosome 19, clone RP23-435K14, complete sequence
          Length = 228991

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tgcggacaatgttgctctca 61
             ||||||||||||||||||||
Sbjct: 97423 tgcggacaatgttgctctca 97404



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>emb|AL136520.3|CNS01DW9 Human chromosome 14 DNA sequence BAC C-2325K12 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 171744

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   aagagaagctatttttccag 85
            ||||||||||||||||||||
Sbjct: 1566 aagagaagctatttttccag 1547



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>gb|L38579.1|MUSGALAN05 Mus musculus galanin gene, exon 5
          Length = 228

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tgcggacaatgttgctctca 61
           ||||||||||||||||||||
Sbjct: 153 tgcggacaatgttgctctca 134



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>emb|AL626765.22| Mouse DNA sequence from clone RP23-179N14 on chromosome 19, complete
              sequence
          Length = 206196

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tgcggacaatgttgctctca 61
              ||||||||||||||||||||
Sbjct: 193958 tgcggacaatgttgctctca 193977



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>emb|Z23069.1|MMGALANMR M.musculus mRNA for galanin
          Length = 450

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tgcggacaatgttgctctca 61
           ||||||||||||||||||||
Sbjct: 193 tgcggacaatgttgctctca 174



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>emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-409I10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 151853

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    aagagaagctatttttccag 85
             ||||||||||||||||||||
Sbjct: 25005 aagagaagctatttttccag 25024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,814,599
Number of Sequences: 3902068
Number of extensions: 1814599
Number of successful extensions: 121415
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121390
Number of HSP's gapped (non-prelim): 25
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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